FFCP PHASE1:Hg19::chr12:10425198..10425201,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr12:10425198..10425201,- | |||
|coexpression_cluster_id=C1355 | |coexpression_cluster_id=C1355 | ||
|description=CAGE_peak_at_chr12:10425198..10425201,- | |description=CAGE_peak_at_chr12:10425198..10425201,- | ||
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|ontology_enrichment_celltype=CL:0000625!4.83e-34!11;CL:0000791!3.91e-28!18;CL:0000789!3.91e-28!18;CL:0002420!3.91e-28!18;CL:0002419!3.91e-28!18;CL:0000790!3.91e-28!18;CL:0000084!4.25e-20!25;CL:0000827!4.25e-20!25;CL:0002127!2.63e-12!1;CL:0000914!2.63e-12!1;CL:0000911!2.63e-12!1;CL:0000814!2.63e-12!1;CL:0002042!2.63e-12!1;CL:0002039!2.63e-12!1;CL:0002040!2.63e-12!1;CL:0002041!2.63e-12!1;CL:0000838!3.73e-12!52;CL:0000542!6.58e-12!53;CL:0000051!6.58e-12!53;CL:0000453!3.59e-09!5;CL:0000738!1.80e-07!140;CL:0000893!8.93e-07!2;CL:0002489!8.93e-07!2;CL:0000809!8.93e-07!2;CL:0000808!8.93e-07!2;CL:0000894!8.93e-07!2;CL:0000806!8.93e-07!2;CL:0000807!8.93e-07!2;CL:0000805!8.93e-07!2;CL:0002425!8.93e-07!2 | |ontology_enrichment_celltype=CL:0000625!4.83e-34!11;CL:0000791!3.91e-28!18;CL:0000789!3.91e-28!18;CL:0002420!3.91e-28!18;CL:0002419!3.91e-28!18;CL:0000790!3.91e-28!18;CL:0000084!4.25e-20!25;CL:0000827!4.25e-20!25;CL:0002127!2.63e-12!1;CL:0000914!2.63e-12!1;CL:0000911!2.63e-12!1;CL:0000814!2.63e-12!1;CL:0002042!2.63e-12!1;CL:0002039!2.63e-12!1;CL:0002040!2.63e-12!1;CL:0002041!2.63e-12!1;CL:0000838!3.73e-12!52;CL:0000542!6.58e-12!53;CL:0000051!6.58e-12!53;CL:0000453!3.59e-09!5;CL:0000738!1.80e-07!140;CL:0000893!8.93e-07!2;CL:0002489!8.93e-07!2;CL:0000809!8.93e-07!2;CL:0000808!8.93e-07!2;CL:0000894!8.93e-07!2;CL:0000806!8.93e-07!2;CL:0000807!8.93e-07!2;CL:0000805!8.93e-07!2;CL:0002425!8.93e-07!2 | ||
|ontology_enrichment_celltype_v019=CL:0002127;1.23e-66;1!CL:0000911;1.23e-66;1!CL:0000814;1.23e-66;1!CL:0000623;3.66e-23;3!CL:0000791;8.72e-16;18!CL:0000789;8.72e-16;18!CL:0002419;8.72e-16;18!CL:0000084;1.06e-11;25!CL:0000542;3.03e-09;53!CL:0000625;2.55e-07;11 | |ontology_enrichment_celltype_v019=CL:0002127;1.23e-66;1!CL:0000911;1.23e-66;1!CL:0000814;1.23e-66;1!CL:0000623;3.66e-23;3!CL:0000791;8.72e-16;18!CL:0000789;8.72e-16;18!CL:0002419;8.72e-16;18!CL:0000084;1.06e-11;25!CL:0000542;3.03e-09;53!CL:0000625;2.55e-07;11 | ||
|ontology_enrichment_celltype_v019_2=CL:0002127,1.23e-66,1;CL:0000914,1.23e-66,1;CL:0000911,1.23e-66,1;CL:0000814,1.23e-66,1;CL:0002042,1.23e-66,1;CL:0002039,1.23e-66,1;CL:0002040,1.23e-66,1;CL:0002041,1.23e-66,1;CL:0000893,3.61e-34,2;CL:0002489,3.61e-34,2;CL:0000809,3.61e-34,2;CL:0000808,3.61e-34,2;CL:0000894,3.61e-34,2;CL:0000806,3.61e-34,2;CL:0000807,3.61e-34,2;CL:0000805,3.61e-34,2;CL:0002425,3.61e-34,2;CL:0000623,4.09e-23,3;CL:0000825,4.09e-23,3;CL:0000791,8.40e-16,18;CL:0000789,8.40e-16,18;CL:0002420,8.40e-16,18;CL:0002419,8.40e-16,18;CL:0000790,8.40e-16,18;CL:0000838,1.77e-12,52;CL:0000542,2.91e-12,53;CL:0000051,2.91e-12,53;CL:0000084,1.03e-11,25;CL:0000827,1.03e-11,25;CL:0000625,2.47e-07,11 | |||
|ontology_enrichment_development_v019=CL:0002425;3.61e-34;2!CL:0000790;8.72e-16;18!CL:0000051;3.03e-09;53 | |ontology_enrichment_development_v019=CL:0002425;3.61e-34;2!CL:0000790;8.72e-16;18!CL:0000051;3.03e-09;53 | ||
|ontology_enrichment_disease=DOID:5662!6.26e-12!1 | |ontology_enrichment_disease=DOID:5662!6.26e-12!1 | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000029!4.53e-12!1;UBERON:0004177!6.20e-07!7 | |ontology_enrichment_uberon=UBERON:0000029!4.53e-12!1;UBERON:0004177!6.20e-07!7 | ||
|ontology_enrichment_uberon_v019= | |ontology_enrichment_uberon_v019= | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,7.35e-18,4;UBERON:0005058,7.35e-18,4;UBERON:0009113,7.35e-18,4;UBERON:0003295,7.35e-18,4;UBERON:0005562,7.35e-18,4;UBERON:0003351,2.19e-12,6;UBERON:0004177,8.16e-11,7;UBERON:0005057,8.16e-11,7;UBERON:0000974,5.73e-08,10;UBERON:0003408,5.73e-08,10;UBERON:0001042,5.73e-08,10;UBERON:0009145,5.73e-08,10;UBERON:0006562,2.32e-07,11;UBERON:0009722,2.32e-07,11;UBERON:0007690,2.32e-07,11 | |||
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|short_description=p@chr12:10425198..10425201,- | |short_description=p@chr12:10425198..10425201,- | ||
}} | }} |
Latest revision as of 04:14, 24 July 2015
Short description: | p@chr12:10425198..10425201, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr12:10425198..10425201, - |
Coexpression cluster: | C1355_Natural_NK_CD8_CD14_Eosinophils_Peripheral_spleen |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
innate effector T cell | 1.23e-66 | 1 |
immature NK T cell | 1.23e-66 | 1 |
effector T cell | 1.23e-66 | 1 |
mature NK T cell | 1.23e-66 | 1 |
immature NK T cell stage IV | 1.23e-66 | 1 |
immature NK T cell stage I | 1.23e-66 | 1 |
immature NK T cell stage II | 1.23e-66 | 1 |
immature NK T cell stage III | 1.23e-66 | 1 |
thymocyte | 3.61e-34 | 2 |
double negative thymocyte | 3.61e-34 | 2 |
double-positive, alpha-beta thymocyte | 3.61e-34 | 2 |
DN4 thymocyte | 3.61e-34 | 2 |
DN1 thymic pro-T cell | 3.61e-34 | 2 |
DN2 thymocyte | 3.61e-34 | 2 |
DN3 thymocyte | 3.61e-34 | 2 |
immature single positive thymocyte | 3.61e-34 | 2 |
early T lineage precursor | 3.61e-34 | 2 |
natural killer cell | 4.09e-23 | 3 |
pro-NK cell | 4.09e-23 | 3 |
mature alpha-beta T cell | 8.40e-16 | 18 |
alpha-beta T cell | 8.40e-16 | 18 |
immature T cell | 8.40e-16 | 18 |
mature T cell | 8.40e-16 | 18 |
immature alpha-beta T cell | 8.40e-16 | 18 |
lymphoid lineage restricted progenitor cell | 1.77e-12 | 52 |
lymphocyte | 2.91e-12 | 53 |
common lymphoid progenitor | 2.91e-12 | 53 |
T cell | 1.03e-11 | 25 |
pro-T cell | 1.03e-11 | 25 |
CD8-positive, alpha-beta T cell | 2.47e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
thymus | 7.35e-18 | 4 |
hemolymphoid system gland | 7.35e-18 | 4 |
thymic region | 7.35e-18 | 4 |
pharyngeal gland | 7.35e-18 | 4 |
thymus primordium | 7.35e-18 | 4 |
pharyngeal epithelium | 2.19e-12 | 6 |
hemopoietic organ | 8.16e-11 | 7 |
immune organ | 8.16e-11 | 7 |
neck | 5.73e-08 | 10 |
gland of gut | 5.73e-08 | 10 |
chordate pharynx | 5.73e-08 | 10 |
pharyngeal region of foregut | 5.73e-08 | 10 |
pharynx | 2.32e-07 | 11 |
entire pharyngeal arch endoderm | 2.32e-07 | 11 |
early pharyngeal endoderm | 2.32e-07 | 11 |