FFCP PHASE1:Hg19::chr2:197791691..197791702,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=80055 | |EntrezGene=80055 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25712 | |HGNC=25712 | ||
|TSSclassifier=strong | |||
|UniProt=A6NI33 | |UniProt=A6NI33 | ||
|association_with_transcript=-222bp_to_ENST00000374738_5end | |association_with_transcript=-222bp_to_ENST00000374738_5end | ||
|cluster_id=chr2:197791691..197791702,- | |||
|description=CAGE_peak_8_at_PGAP1_5end | |description=CAGE_peak_8_at_PGAP1_5end | ||
|id=chr2:197791691..197791702,- | |id=chr2:197791691..197791702,- | ||
|ontology_enrichment_celltype=CL:0000047!1.25e-08!8;CL:0002319!1.58e-08!25;CL:0000133!3.18e-07!59 | |ontology_enrichment_celltype=CL:0000047!1.25e-08!8;CL:0002319!1.58e-08!25;CL:0000133!3.18e-07!59 | ||
|ontology_enrichment_celltype_v019=CL:0000047;5.18e-37;2!CL:0000540;1.84e-27;6!CL:0000404;1.84e-27;6!CL:0002319;9.32e-17;25 | |ontology_enrichment_celltype_v019=CL:0000047;5.18e-37;2!CL:0000540;1.84e-27;6!CL:0000404;1.84e-27;6!CL:0002319;9.32e-17;25 | ||
|ontology_enrichment_celltype_v019_2=CL:0000047,5.05e-56,8;CL:0000540,1.47e-27,6;CL:0000031,1.47e-27,6;CL:0000404,1.47e-27,6;CL:0002319,8.73e-17,25;CL:0000133,1.73e-10,59;CL:0000221,1.29e-08,72 | |||
|ontology_enrichment_development_v019=CL:0000031;1.84e-27;6 | |ontology_enrichment_development_v019=CL:0000031;1.84e-27;6 | ||
|ontology_enrichment_disease=DOID:171!5.66e-09!10;DOID:169!2.78e-07!6 | |ontology_enrichment_disease=DOID:171!5.66e-09!10;DOID:169!2.78e-07!6 | ||
|ontology_enrichment_disease_v019=DOID:3193;2.60e-10;2!DOID:962;2.60e-10;2!DOID:171;3.14e-08;10!DOID:1192;2.71e-07;3 | |ontology_enrichment_disease_v019=DOID:3193;2.60e-10;2!DOID:962;2.60e-10;2!DOID:171;3.14e-08;10!DOID:1192;2.71e-07;3 | ||
|ontology_enrichment_disease_v019_2=DOID:3193,3.27e-10,2;DOID:962,3.27e-10,2;DOID:171,3.37e-08,10;DOID:1192,3.16e-07,3 | |||
|ontology_enrichment_uberon=UBERON:0000073!4.09e-14!94;UBERON:0001016!4.09e-14!94;UBERON:0001017!8.65e-12!82;UBERON:0005743!1.79e-11!86;UBERON:0000924!7.56e-10!173;UBERON:0006601!7.56e-10!173;UBERON:0002346!7.62e-09!90;UBERON:0004121!1.02e-08!169;UBERON:0001049!1.83e-08!57;UBERON:0005068!1.83e-08!57;UBERON:0006241!1.83e-08!57;UBERON:0007135!1.83e-08!57;UBERON:0002020!2.58e-08!34;UBERON:0003528!2.58e-08!34;UBERON:0002780!9.23e-08!41;UBERON:0001890!9.23e-08!41;UBERON:0006240!9.23e-08!41;UBERON:0003075!1.48e-07!86;UBERON:0007284!1.48e-07!86;UBERON:0003080!1.95e-07!42;UBERON:0000955!2.25e-07!69;UBERON:0006238!2.25e-07!69;UBERON:0001893!2.68e-07!34;UBERON:0002616!3.38e-07!59;UBERON:0003056!3.78e-07!61;UBERON:0001869!5.12e-07!32;UBERON:0002791!8.07e-07!33 | |ontology_enrichment_uberon=UBERON:0000073!4.09e-14!94;UBERON:0001016!4.09e-14!94;UBERON:0001017!8.65e-12!82;UBERON:0005743!1.79e-11!86;UBERON:0000924!7.56e-10!173;UBERON:0006601!7.56e-10!173;UBERON:0002346!7.62e-09!90;UBERON:0004121!1.02e-08!169;UBERON:0001049!1.83e-08!57;UBERON:0005068!1.83e-08!57;UBERON:0006241!1.83e-08!57;UBERON:0007135!1.83e-08!57;UBERON:0002020!2.58e-08!34;UBERON:0003528!2.58e-08!34;UBERON:0002780!9.23e-08!41;UBERON:0001890!9.23e-08!41;UBERON:0006240!9.23e-08!41;UBERON:0003075!1.48e-07!86;UBERON:0007284!1.48e-07!86;UBERON:0003080!1.95e-07!42;UBERON:0000955!2.25e-07!69;UBERON:0006238!2.25e-07!69;UBERON:0001893!2.68e-07!34;UBERON:0002616!3.38e-07!59;UBERON:0003056!3.78e-07!61;UBERON:0001869!5.12e-07!32;UBERON:0002791!8.07e-07!33 | ||
|ontology_enrichment_uberon_v019=UBERON:0001954;2.60e-10;2!UBERON:0003714;2.60e-10;2!UBERON:0003022;2.60e-10;2!UBERON:0002421;2.60e-10;2!UBERON:0002600;2.60e-10;2!UBERON:0002114;2.71e-07;2 | |ontology_enrichment_uberon_v019=UBERON:0001954;2.60e-10;2!UBERON:0003714;2.60e-10;2!UBERON:0003022;2.60e-10;2!UBERON:0002421;2.60e-10;2!UBERON:0002600;2.60e-10;2!UBERON:0002114;2.71e-07;2 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,4.98e-12,89;UBERON:0001954,2.27e-10,2;UBERON:0003022,2.27e-10,2;UBERON:0002421,2.27e-10,2;UBERON:0002600,2.27e-10,2;UBERON:0001017,2.65e-10,81;UBERON:0003714,3.27e-10,2;UBERON:0004121,8.79e-08,171;UBERON:0000924,8.79e-08,171;UBERON:0006601,8.79e-08,171;UBERON:0002114,2.32e-07,2 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.218441372130172,0,0.247532705920093,0,0,0,0,0,0.369363174230364,0,0,0.286235987131057,0.410623275218653,0.125542639594803,0,0,0,0,0,0.154816123316076,0,0,0,0.0774672005803016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256160706529101,0,0,0,0,0.188242339542605,0,0,0,0,0,0.659702600373432,0.199463657621632,0,0,0,0,0,0,0,0,0,0.316462387440884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111410456885174,0,0,0,0.128091319725675,0.260118695119756,0,0.276350017785848,0,0,0,0,0,0.383220493601921,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.795285947051099,0,0.189069634328136,0,0.175669571386252,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17859945656816,0,0.112611480483322,0,0,0,0,0,0,0,0,0,0,0.354668382198357,0,0,0,0,0,0,0,0,0,0.624320153660641,0,0,0,0,0.280901613404497,0,0,0,0,0,0,0,0,0.250237039743928,0,0,0,0,0,0.358779271377724,0.213557388818567,0,0.600182192168805,0,0,0,0,0,0.252433774244115,0,0,0,0.10075209822764,0,0,0,0,0.121973706129595,0,0.232387885739037,0.207322110030741,0,0.72995471815166,0,0,0,0,0,0,0,0,0,0,0,0,0.196221465125346,0,0,0,0,0,0,0,0,0.882926198829301,0.122988438543114,0,0,0,0.201057944823262,0.0925884451585296,0,0,0,0.463721619900307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383382679165211,0,0,0,0,0,0,0,0,0,0,0,0.285826432630578,0,0,0.1466765716419,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.27047312111232,2.60279707715243,1.54657762555539,1.17261385734044,1.91381625495949,0,0,0,0,0,0,0,0.178428988797162,0,0,0,0,0,0,0,0.0868836144680828,0,0,0,0,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0.154209693802656,0,0,0,0,0,0,0,0,0,0,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0.247528499761764,0,0,0,0.096670718292122,0.154048617114644,0.307007349452259,0.137836572484531,0.429680979473094,0,0.0852266274161009,0,0,0,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136499911407986,0,0,0,0,0,0,0,0,0,0.281695602532241,0,0,0,0,0,0,0,0.349934720244983,0,0,0,0.282431402330337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0711418433484141,0.318852545457645,0,0.191505370132367,0,0,0,0,0,0,0,0,0,0,0,0,0,0.166849141711909,0,0,0,0,0,0,0,0.146508179271894,0,0.111443384277478,0,0,0,0,0.994147647766298,0,0.111308705022906,0,0,0,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0.0927680981618513,0,0,0,0,0,0.508507300585533,0.236387681767936,0,0,0.520874984799877,0,0.120596438625408,0,0.110579259931225,0,0,0.10893846351899,0,0.0769502585037971,0.113942055847001,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0.296521128680622,0,0,0,0,0.234264445725339,0,0,0.485560759068186,0,0,0.61214552326098,0.252746318513952,0.150323419414493,0.207376382794494,0,0.330991955875499,0,0,0,0.277349346026277,0,0.0979923974143777,0,0,0.343972064943233,0,0,0.0821154570532092,0,0,0.225980740780532,0,0,0.253243183823515,0.195551382734803,0,0,0,0,0.114536596165916,0.343189995723929,0,0.124252535565433,0.235694034616795,0,0,0,0.288950589901519,0,0,0,0,0,0.279282401272254,0,0,0,0,0.223171457441873,0.134366944973453,0,0,0,0.0824158583811665,0.0674035438541849,0,0,1.59045937961861,0,0,0.550157746388935,0.415440338029185,0,0,0.242998226632099,0,0,0.157363764404994,0,0.179287339332845,0.383830394638891,0,0,0,0,0,0,0,0.082092520749339,0,0.113312091520126,0,0,0.129282956361551,0.26446520348538,0,0,0,0.471612915298998,0,0,0,0,0,0,0.2506898940227,0.306345576763462,0,0,0,0.122026264901963,0.1251909307065,0,0,0.124192805882767,0,0.124980407962107,0,0,0,0,0.869526171664951,0,0.233713309847224,0,0.189403005275089,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.181848659202559,0,0,0,0,0,0,0,0,0,0.260994291965212,0,0,0,0.179088841081487,0,0.219284049578707,0,0,0,0,0,0,0,0,0,0,0,0,0.211312123358627,0,0.426766918776564,0,0,0,0,0,0.255788742607303,0.323474434190045,0.157265941855896,0.436838552768056,0.169732529954025,9.77844632467741,0.371807292777007,1.11728983594649,0,0,0,0,0.3062454773532,0.321146125482298,0,0.159633859057151,0,0.504143392443436,0,0.322951291263702,0,0.0981477185010256,0,0.183428598521679,0,0,0,0,0.0752103283492573,0,0,0.261906694481422,0,0,0.135075169236789,0,0.206686796501184,0,1.09394961803644,0,0,0,0,0,0,0,0.682986574053893,0.0887023701626388,0,0,0.135939465953663,0,0.118193840883968,0,0.078493092850514,0.471346769748006,0,0,0,0,0.214429632529969,0.47404083519818,0,0,0,0,0,0,0,0,0.170426809518315,0,0.22910686854405,0.31020638566432,0,0,0,0,0,0,0,0.485710993059139,0.467878926924211,9.54963720774568,0.118920090777569,0,0.109940516745429,0.150962843566674,0.0771741581079447,0.437119121007915,0,0.245148321753905,0.235676547101626,0.196308467114945,0,0,0,0,0.128915775947154,0,0,0,0,0,0,0.286679166302903,0,0,1.74540276136151,0,0,0,0,0.126166424835079,0,0,0,0,0,0,0,0,0,0.20686599172379,0.426467963801962,0,0.0645889098360061,0.31037357147929,0,0,0.202117188958219,0,0,0.0673520530145875,0.143444410785353,0,0,0.106727345877715,0,0,0,0.122241444182866,0.813792356631477,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.218441372130172,0,0.247532705920093,0,0,0,0,0,0.369363174230364,0,0,0.286235987131057,0.410623275218653,0.125542639594803,0,0,0,0,0,0.154816123316076,0,0,0,0.0774672005803016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256160706529101,0,0,0,0,0.188242339542605,0,0,0,0,0,0.659702600373432,0.199463657621632,0,0,0,0,0,0,0,0,0,0.316462387440884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111410456885174,0,0,0,0.128091319725675,0.260118695119756,0,0.276350017785848,0,0,0,0,0,0.383220493601921,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.795285947051099,0,0.189069634328136,0,0.175669571386252,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17859945656816,0,0.112611480483322,0,0,0,0,0,0,0,0,0,0,0.354668382198357,0,0,0,0,0,0,0,0,0,0.624320153660641,0,0,0,0,0.280901613404497,0,0,0,0,0,0,0,0,0.250237039743928,0,0,0,0,0,0.358779271377724,0.213557388818567,0,0.600182192168805,0,0,0,0,0,0.252433774244115,0,0,0,0.10075209822764,0,0,0,0,0.121973706129595,0,0.232387885739037,0.207322110030741,0,0.72995471815166,0,0,0,0,0,0,0,0,0,0,0,0,0.196221465125346,0,0,0,0,0,0,0,0,0.882926198829301,0.122988438543114,0,0,0,0.201057944823262,0.0925884451585296,0,0,0,0.463721619900307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383382679165211,0,0,0,0,0,0,0,0,0,0,0,0.285826432630578,0,0,0.1466765716419,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.27047312111232,2.60279707715243,1.54657762555539,1.17261385734044,1.91381625495949,0,0,0,0,0,0,0,0.178428988797162,0,0,0,0,0,0,0,0.0868836144680828,0,0,0,0,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0.154209693802656,0,0,0,0,0,0,0,0,0,0,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0.247528499761764,0,0,0,0.096670718292122,0.154048617114644,0.307007349452259,0.137836572484531,0.429680979473094,0,0.0852266274161009,0,0,0,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136499911407986,0,0,0,0,0,0,0,0,0,0.281695602532241,0,0,0,0,0,0,0,0.349934720244983,0,0,0,0.282431402330337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0711418433484141,0.318852545457645,0,0.191505370132367,0,0,0,0,0,0,0,0,0,0,0,0,0,0.166849141711909,0,0,0,0,0,0,0,0.146508179271894,0,0.111443384277478,0,0,0,0,0.994147647766298,0,0.111308705022906,0,0,0,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0.0927680981618513,0,0,0,0,0,0.508507300585533,0.236387681767936,0,0,0.520874984799877,0,0.120596438625408,0,0.110579259931225,0,0,0.10893846351899,0,0.0769502585037971,0.113942055847001,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0.296521128680622,0,0,0,0,0.234264445725339,0,0,0.485560759068186,0,0,0.61214552326098,0.252746318513952,0.150323419414493,0.207376382794494,0,0.330991955875499,0,0,0,0.277349346026277,0,0.0979923974143777,0,0,0.343972064943233,0,0,0.0821154570532092,0,0,0.225980740780532,0,0,0.253243183823515,0.195551382734803,0,0,0,0,0.114536596165916,0.343189995723929,0,0.124252535565433,0.235694034616795,0,0,0,0.288950589901519,0,0,0,0,0,0.279282401272254,0,0,0,0,0.223171457441873,0.134366944973453,0,0,0,0.0824158583811665,0.0674035438541849,0,0,1.59045937961861,0,0,0.550157746388935,0.415440338029185,0,0,0.242998226632099,0,0,0.157363764404994,0,0.179287339332845,0.383830394638891,0,0,0,0,0,0,0,0.082092520749339,0,0.113312091520126,0,0,0.129282956361551,0.26446520348538,0,0,0,0.471612915298998,0,0,0,0,0,0,0.2506898940227,0.306345576763462,0,0,0,0.122026264901963,0.1251909307065,0,0,0.124192805882767,0,0.124980407962107,0,0,0,0,0.869526171664951,0,0.233713309847224,0,0.189403005275089,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.181848659202559,0,0,0,0,0,0,0,0,0,0.260994291965212,0,0,0,0.179088841081487,0,0.219284049578707,0,0,0,0,0,0,0,0,0,0,0,0,0.211312123358627,0,0.426766918776564,0,0,0,0,0,0.255788742607303,0.323474434190045,0.157265941855896,0.436838552768056,0.169732529954025,9.77844632467741,0.371807292777007,1.11728983594649,0,0,0,0,0.3062454773532,0.321146125482298,0,0.159633859057151,0,0.504143392443436,0,0.322951291263702,0,0.0981477185010256,0,0.183428598521679,0,0,0,0,0.0752103283492573,0,0,0.261906694481422,0,0,0.135075169236789,0,0.206686796501184,0,1.09394961803644,0,0,0,0,0,0,0,0.682986574053893,0.0887023701626388,0,0,0.135939465953663,0,0.118193840883968,0,0.078493092850514,0.471346769748006,0,0,0,0,0.214429632529969,0.47404083519818,0,0,0,0,0,0,0,0,0.170426809518315,0,0.22910686854405,0.31020638566432,0,0,0,0,0,0,0,0.485710993059139,0.467878926924211,9.54963720774568,0.118920090777569,0,0.109940516745429,0.150962843566674,0.0771741581079447,0.437119121007915,0,0.245148321753905,0.235676547101626,0.196308467114945,0,0,0,0,0.128915775947154,0,0,0,0,0,0,0.286679166302903,0,0,1.74540276136151,0,0,0,0,0.126166424835079,0,0,0,0,0,0,0,0,0,0.20686599172379,0.426467963801962,0,0.0645889098360061,0.31037357147929,0,0,0.202117188958219,0,0,0.0673520530145875,0.143444410785353,0,0,0.106727345877715,0,0,0,0.122241444182866,0.813792356631477,0,0,0 | ||
|short_description=p8@PGAP1 | |short_description=p8@PGAP1 | ||
}} | }} |
Latest revision as of 07:36, 19 September 2015
Short description: | p8@PGAP1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_PGAP1_5end |
Coexpression cluster: | NA |
Association with transcript: | -222bp_to_ENST00000374738_5end |
EntrezGene: | PGAP1 |
HGNC: | 25712 |
UniProt: | A6NI33 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuronal stem cell | 5.05e-56 | 8 |
neuron | 1.47e-27 | 6 |
neuroblast | 1.47e-27 | 6 |
electrically signaling cell | 1.47e-27 | 6 |
neural cell | 8.73e-17 | 25 |
neurectodermal cell | 1.73e-10 | 59 |
ectodermal cell | 1.29e-08 | 72 |
Ontology term | p-value | n |
---|---|---|
nervous system | 4.98e-12 | 89 |
Ammon's horn | 2.27e-10 | 2 |
lobe parts of cerebral cortex | 2.27e-10 | 2 |
hippocampal formation | 2.27e-10 | 2 |
limbic lobe | 2.27e-10 | 2 |
central nervous system | 2.65e-10 | 81 |
neural tissue | 3.27e-10 | 2 |
ectoderm-derived structure | 8.79e-08 | 171 |
ectoderm | 8.79e-08 | 171 |
presumptive ectoderm | 8.79e-08 | 171 |
duodenum | 2.32e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
peripheral nerve sheath neoplasm | 3.27e-10 | 2 |
neurofibroma | 3.27e-10 | 2 |
neuroectodermal tumor | 3.37e-08 | 10 |
peripheral nervous system neoplasm | 3.16e-07 | 3 |