FFCP PHASE1:Hg19::chr20:61288222..61288232,+: Difference between revisions
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|id=chr20:61288222..61288232,+
|short_description=p14@SLCO4A1
|description=CAGE_peak_14_at_SLCO4A1_5end
|association_with_transcript=415bp_to_AF187817,CU677405,DQ89...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=28231 | |EntrezGene=28231 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=10953 | |HGNC=10953 | ||
|TSSclassifier=strong | |||
|UniProt=Q96BD0 | |UniProt=Q96BD0 | ||
|association_with_transcript=415bp_to_AF187817,CU677405,DQ892857,DQ896104_5end | |||
|cluster_id=chr20:61288222..61288232,+ | |||
|coexpression_cluster_id=C360 | |||
|description=CAGE_peak_14_at_SLCO4A1_5end | |||
|id=chr20:61288222..61288232,+ | |||
|ontology_enrichment_celltype=CL:0000349!3.70e-20!3;CL:0002577!3.70e-20!3;CL:0002536!9.14e-14!2 | |||
|ontology_enrichment_celltype_v019=CL:0002577;9.60e-85;3!CL:0000349;1.97e-72;19!CL:0002537;1.28e-23;5!CL:0002536;2.05e-15;2!CL:0002541;9.90e-11;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002577,4.06e-85,3;CL:0000349,1.97e-72,19;CL:0002537,1.61e-23,5;CL:0002536,2.37e-15,2;CL:0002541,9.90e-11,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:305!5.36e-07!106 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005631!1.55e-35!14;UBERON:0000158!1.55e-35!14;UBERON:0001987!7.46e-26!4;UBERON:0004340!7.46e-26!4;UBERON:0003124!9.42e-23!7;UBERON:0000478!4.16e-20!24;UBERON:0000305!6.95e-15!7;UBERON:0004871!4.86e-13!8;UBERON:0004923!2.42e-09!57;UBERON:0000995!2.56e-07!21;UBERON:0002372!2.83e-07!1;UBERON:0001961!2.83e-07!1;UBERON:0001744!2.83e-07!1;UBERON:0001735!2.83e-07!1;UBERON:0000997!4.34e-07!1;UBERON:0005056!4.34e-07!1;UBERON:0005795!5.67e-07!22;UBERON:0003975!5.67e-07!22;UBERON:0005156!5.69e-07!59;UBERON:0000990!5.69e-07!59 | |||
|ontology_enrichment_uberon_v019=UBERON:0001987;7.66e-64;4!UBERON:0000478;1.81e-57;24!UBERON:0005631;2.22e-45;10!UBERON:0000158;2.22e-45;10!UBERON:0000305;7.11e-37;7!UBERON:0003124;9.90e-11;3!UBERON:0000920;9.90e-11;3!UBERON:0000077;3.58e-10;27!UBERON:0004923;2.64e-07;55 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,4.60e-98,14;UBERON:0000158,4.60e-98,14;UBERON:0003124,9.49e-65,7;UBERON:0001987,4.02e-64,4;UBERON:0004340,4.02e-64,4;UBERON:0000478,1.82e-57,24;UBERON:0000305,1.03e-36,7;UBERON:0004871,3.02e-32,8;UBERON:0004923,3.53e-21,66;UBERON:0000995,6.31e-13,21;UBERON:0005795,2.26e-12,22;UBERON:0003975,2.26e-12,22;UBERON:0004175,5.65e-11,25;UBERON:0000920,9.90e-11,3;UBERON:0000077,1.48e-09,29;UBERON:0003134,1.25e-07,37;UBERON:0000474,1.25e-07,37;UBERON:0003100,6.02e-07,41 | |||
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|short_description=p14@SLCO4A1 | |||
}} | }} |
Latest revision as of 11:11, 17 September 2015
Short description: | p14@SLCO4A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_14_at_SLCO4A1_5end |
Coexpression cluster: | C360_Placental_Amniotic_amniotic_teratocarcinoma_chorionic_neuroblastoma_H9 |
Association with transcript: | 415bp_to_AF187817, CU677405, DQ892857, DQ896104_5end |
EntrezGene: | SLCO4A1 |
HGNC: | 10953 |
UniProt: | Q96BD0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
placental epithelial cell | 4.06e-85 | 3 |
extraembryonic cell | 1.97e-72 | 19 |
amnion mesenchymal stem cell | 1.61e-23 | 5 |
amniotic epithelial cell | 2.37e-15 | 2 |
chorionic membrane mesenchymal stem cell | 9.90e-11 | 3 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 4.60e-98 | 14 |
membranous layer | 4.60e-98 | 14 |
chorion | 9.49e-65 | 7 |
placenta | 4.02e-64 | 4 |
allantois | 4.02e-64 | 4 |
extraembryonic structure | 1.82e-57 | 24 |
amnion | 1.03e-36 | 7 |
somatic layer of lateral plate mesoderm | 3.02e-32 | 8 |
organ component layer | 3.53e-21 | 66 |
uterus | 6.31e-13 | 21 |
embryonic uterus | 2.26e-12 | 22 |
internal female genitalia | 2.26e-12 | 22 |
internal genitalia | 5.65e-11 | 25 |
egg chorion | 9.90e-11 | 3 |
mixed endoderm/mesoderm-derived structure | 1.48e-09 | 29 |
female reproductive organ | 1.25e-07 | 37 |
female reproductive system | 1.25e-07 | 37 |
female organism | 6.02e-07 | 41 |