FFCP PHASE1:Hg19::chr2:220034745..220034768,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=151295 | |EntrezGene=151295 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20601 | |HGNC=20601 | ||
|TSSclassifier=strong | |||
|UniProt=F8WET7,B7Z512 | |UniProt=F8WET7,B7Z512 | ||
|association_with_transcript=0bp_to_ENST00000421779,ENST00000455516,ENST00000461812,ENST00000465580_5end | |association_with_transcript=0bp_to_ENST00000421779,ENST00000455516,ENST00000461812,ENST00000465580_5end | ||
|cluster_id=chr2:220034745..220034768,- | |||
|coexpression_cluster_id=C133 | |coexpression_cluster_id=C133 | ||
|description=CAGE_peak_2_at_SLC23A3_5end | |description=CAGE_peak_2_at_SLC23A3_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0002563!7.36e-08!4 | |ontology_enrichment_celltype=CL:0002563!7.36e-08!4 | ||
|ontology_enrichment_celltype_v019=CL:0002563;9.72e-19;4!CL:0002253;3.13e-10;2 | |ontology_enrichment_celltype_v019=CL:0002563;9.72e-19;4!CL:0002253;3.13e-10;2 | ||
|ontology_enrichment_celltype_v019_2=CL:0002563,8.11e-19,4;CL:0002253,2.99e-10,2 | |||
|ontology_enrichment_development_v019=UBERON:0003104;6.37e-10;31!UBERON:0003918;3.31e-08;10!UBERON:0007687;3.31e-08;10 | |ontology_enrichment_development_v019=UBERON:0003104;6.37e-10;31!UBERON:0003918;3.31e-08;10!UBERON:0007687;3.31e-08;10 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:3493;1.43e-10;2 | |ontology_enrichment_disease_v019=DOID:3493;1.43e-10;2 | ||
|ontology_enrichment_disease_v019_2=DOID:3493,1.43e-10,2 | |||
|ontology_enrichment_uberon=UBERON:0000160!2.67e-18!27;UBERON:0000059!2.27e-15!11;UBERON:0005409!6.49e-14!35;UBERON:0004907!1.15e-12!5;UBERON:0001155!1.93e-12!9;UBERON:0004921!6.18e-10!129;UBERON:0004185!6.18e-10!129;UBERON:0001154!6.19e-08!1;UBERON:0001153!6.19e-08!1;UBERON:0001242!7.36e-08!4;UBERON:0001262!7.36e-08!4;UBERON:0004786!7.36e-08!4;UBERON:0004808!7.36e-08!4;UBERON:0001277!7.36e-08!4;UBERON:0001007!9.16e-08!155;UBERON:0001555!9.16e-08!155;UBERON:0007026!9.16e-08!155;UBERON:0001052!1.07e-07!4;UBERON:0002372!1.21e-07!1;UBERON:0001961!1.21e-07!1;UBERON:0001744!1.21e-07!1;UBERON:0001735!1.21e-07!1;UBERON:0004119!7.12e-07!169;UBERON:0000925!7.12e-07!169;UBERON:0006595!7.12e-07!169 | |ontology_enrichment_uberon=UBERON:0000160!2.67e-18!27;UBERON:0000059!2.27e-15!11;UBERON:0005409!6.49e-14!35;UBERON:0004907!1.15e-12!5;UBERON:0001155!1.93e-12!9;UBERON:0004921!6.18e-10!129;UBERON:0004185!6.18e-10!129;UBERON:0001154!6.19e-08!1;UBERON:0001153!6.19e-08!1;UBERON:0001242!7.36e-08!4;UBERON:0001262!7.36e-08!4;UBERON:0004786!7.36e-08!4;UBERON:0004808!7.36e-08!4;UBERON:0001277!7.36e-08!4;UBERON:0001007!9.16e-08!155;UBERON:0001555!9.16e-08!155;UBERON:0007026!9.16e-08!155;UBERON:0001052!1.07e-07!4;UBERON:0002372!1.21e-07!1;UBERON:0001961!1.21e-07!1;UBERON:0001744!1.21e-07!1;UBERON:0001735!1.21e-07!1;UBERON:0004119!7.12e-07!169;UBERON:0000925!7.12e-07!169;UBERON:0006595!7.12e-07!169 | ||
|ontology_enrichment_uberon_v019=UBERON:0000160;4.69e-25;17!UBERON:0005409;1.17e-19;22!UBERON:0001242;9.72e-19;4!UBERON:0001262;9.72e-19;4!UBERON:0004786;9.72e-19;4!UBERON:0004808;9.72e-19;4!UBERON:0001277;9.72e-19;4!UBERON:0001155;1.28e-18;9!UBERON:0000059;2.31e-15;11!UBERON:0004921;1.46e-13;33!UBERON:0000485;3.85e-11;7!UBERON:0003929;3.85e-11;7!UBERON:0003350;7.26e-10;8 | |ontology_enrichment_uberon_v019=UBERON:0000160;4.69e-25;17!UBERON:0005409;1.17e-19;22!UBERON:0001242;9.72e-19;4!UBERON:0001262;9.72e-19;4!UBERON:0004786;9.72e-19;4!UBERON:0004808;9.72e-19;4!UBERON:0001277;9.72e-19;4!UBERON:0001155;1.28e-18;9!UBERON:0000059;2.31e-15;11!UBERON:0004921;1.46e-13;33!UBERON:0000485;3.85e-11;7!UBERON:0003929;3.85e-11;7!UBERON:0003350;7.26e-10;8 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,4.24e-25,17;UBERON:0001242,8.11e-19,4;UBERON:0001262,8.11e-19,4;UBERON:0004786,8.11e-19,4;UBERON:0004808,8.11e-19,4;UBERON:0001277,8.11e-19,4;UBERON:0001155,1.25e-18,9;UBERON:0005409,1.94e-17,25;UBERON:0000059,2.25e-15,11;UBERON:0003350,6.63e-10,8;UBERON:0000485,6.61e-09,9 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.00738053912763,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116193942869518,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.8448265781467,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.362578348774867,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.412164046590889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.376575203107117,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.561421621224659,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276283915531148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163232808159148,1.55488378577335,0,0,4.33442066066362,3.66618086960175,0,0,0,0,0,0,0,0,0,0,1.20990716048664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0967563312890851,0,0,0.0969890164884194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.429226048136571,0,0,0,0,0.0787831823072236,0,0,0,0,0,0,0,0,0,0,0,0,0,2.04894838977915,7.18627857449474,0,0,0,0,0,0,0,0,0,0,0,0,0,1.02586563574658,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318004350653419,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.280272163313789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,25.2370104713298,0,0,0,0,0,0,0,0,0,0,12.3478652972711,0.218559560503957,0,0,0,0,0,0,0,0,0,0,0,0,0.0802413666891683,0,0,0,0,0,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213233981900981,0,0,0,0,0,0,0,0,0.0673520530145875,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.00738053912763,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116193942869518,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.8448265781467,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.362578348774867,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.412164046590889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.376575203107117,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.561421621224659,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276283915531148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163232808159148,1.55488378577335,0,0,4.33442066066362,3.66618086960175,0,0,0,0,0,0,0,0,0,0,1.20990716048664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0967563312890851,0,0,0.0969890164884194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.429226048136571,0,0,0,0,0.0787831823072236,0,0,0,0,0,0,0,0,0,0,0,0,0,2.04894838977915,7.18627857449474,0,0,0,0,0,0,0,0,0,0,0,0,0,1.02586563574658,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318004350653419,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.280272163313789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,25.2370104713298,0,0,0,0,0,0,0,0,0,0,12.3478652972711,0.218559560503957,0,0,0,0,0,0,0,0,0,0,0,0,0.0802413666891683,0,0,0,0,0,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213233981900981,0,0,0,0,0,0,0,0,0.0673520530145875,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p2@SLC23A3 | |short_description=p2@SLC23A3 | ||
}} | }} |
Latest revision as of 19:31, 24 September 2015
Short description: | p2@SLC23A3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SLC23A3_5end |
Coexpression cluster: | C133_signet_gall_small_kidney_colon_ductal_adenocarcinoma |
Association with transcript: | 0bp_to_ENST00000421779, ENST00000455516, ENST00000461812, ENST00000465580_5end |
EntrezGene: | SLC23A3 |
HGNC: | 20601 |
UniProt: | F8WET7B7Z512 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal epithelial cell | 8.11e-19 | 4 |
epithelial cell of large intestine | 2.99e-10 | 2 |
Ontology term | p-value | n |
---|---|---|
intestine | 4.24e-25 | 17 |
intestinal mucosa | 8.11e-19 | 4 |
wall of intestine | 8.11e-19 | 4 |
gastrointestinal system mucosa | 8.11e-19 | 4 |
gastrointestinal system epithelium | 8.11e-19 | 4 |
intestinal epithelium | 8.11e-19 | 4 |
colon | 1.25e-18 | 9 |
gastrointestinal system | 1.94e-17 | 25 |
large intestine | 2.25e-15 | 11 |
epithelium of mucosa | 6.63e-10 | 8 |
simple columnar epithelium | 6.61e-09 | 9 |
Ontology term | p-value | n |
---|---|---|
signet ring cell adenocarcinoma | 1.43e-10 | 2 |