FFCP PHASE1:Hg19::chr17:48271731..48271815,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1277 | |EntrezGene=1277 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2197 | |HGNC=2197 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-18bp_to_ENST00000463440_5end | |association_with_transcript=-18bp_to_ENST00000463440_5end | ||
|cluster_id=chr17:48271731..48271815,- | |||
|coexpression_cluster_id=C59 | |coexpression_cluster_id=C59 | ||
|description=CAGE_peak_22_at_COL1A1_5end | |description=CAGE_peak_22_at_COL1A1_5end | ||
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|ontology_enrichment_celltype=CL:0000055!5.63e-42!180;CL:0000057!2.14e-25!75;CL:0000183!5.02e-16!59;CL:0000680!9.92e-16!57;CL:0000056!9.92e-16!57;CL:0000355!9.92e-16!57;CL:0000187!6.36e-15!54;CL:0000393!3.70e-13!60;CL:0000211!3.70e-13!60;CL:0000192!1.29e-11!42;CL:0000514!1.29e-11!42;CL:0000048!6.72e-10!430;CL:0000723!3.48e-09!436;CL:0000034!7.47e-09!444;CL:0002620!1.24e-08!23;CL:0002371!4.28e-08!591;CL:0000144!4.95e-08!625;CL:0000499!8.48e-08!27;CL:0000359!1.28e-07!32;CL:0002334!1.67e-07!12;CL:0002494!6.86e-07!16 | |ontology_enrichment_celltype=CL:0000055!5.63e-42!180;CL:0000057!2.14e-25!75;CL:0000183!5.02e-16!59;CL:0000680!9.92e-16!57;CL:0000056!9.92e-16!57;CL:0000355!9.92e-16!57;CL:0000187!6.36e-15!54;CL:0000393!3.70e-13!60;CL:0000211!3.70e-13!60;CL:0000192!1.29e-11!42;CL:0000514!1.29e-11!42;CL:0000048!6.72e-10!430;CL:0000723!3.48e-09!436;CL:0000034!7.47e-09!444;CL:0002620!1.24e-08!23;CL:0002371!4.28e-08!591;CL:0000144!4.95e-08!625;CL:0000499!8.48e-08!27;CL:0000359!1.28e-07!32;CL:0002334!1.67e-07!12;CL:0002494!6.86e-07!16 | ||
|ontology_enrichment_celltype_v019=CL:0002320;3.81e-10;188!CL:0000134;3.85e-10;55!CL:0000057;4.20e-10;73!CL:0000723;3.23e-09;61!CL:0000048;3.82e-09;58!CL:0000187;4.79e-09;55!CL:0002334;8.01e-09;12!CL:0000499;1.11e-08;28!CL:0000192;2.36e-08;43!CL:0002620;3.83e-08;23!CL:0000393;4.05e-08;61!CL:0000211;4.05e-08;61!CL:0002494;4.06e-08;16!CL:0000327;2.56e-07;15 | |ontology_enrichment_celltype_v019=CL:0002320;3.81e-10;188!CL:0000134;3.85e-10;55!CL:0000057;4.20e-10;73!CL:0000723;3.23e-09;61!CL:0000048;3.82e-09;58!CL:0000187;4.79e-09;55!CL:0002334;8.01e-09;12!CL:0000499;1.11e-08;28!CL:0000192;2.36e-08;43!CL:0002620;3.83e-08;23!CL:0000393;4.05e-08;61!CL:0000211;4.05e-08;61!CL:0002494;4.06e-08;16!CL:0000327;2.56e-07;15 | ||
|ontology_enrichment_celltype_v019_2=CL:0000057,2.25e-26,76;CL:0000048,1.84e-17,427;CL:0000680,6.08e-17,58;CL:0000056,6.08e-17,58;CL:0000355,6.08e-17,58;CL:0000723,1.82e-16,433;CL:0000187,5.66e-16,55;CL:0000034,3.36e-15,441;CL:0000393,6.11e-13,61;CL:0000211,6.11e-13,61;CL:0000192,6.84e-12,43;CL:0000514,6.84e-12,43;CL:0002320,5.36e-09,361;CL:0002334,8.99e-09,12;CL:0000499,9.97e-09,28;CL:0002620,4.56e-08,23;CL:0002494,4.97e-08,16;CL:0000134,1.67e-07,354;CL:0000327,2.38e-07,15;CL:0000359,7.15e-07,32 | |||
|ontology_enrichment_development_v019=CL:0000355;1.53e-09;58!CL:0000514;2.36e-08;43 | |ontology_enrichment_development_v019=CL:0000355;1.53e-09;58!CL:0000514;2.36e-08;43 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:2394;9.14e-07;14 | |ontology_enrichment_disease_v019=DOID:2394;9.14e-07;14 | ||
|ontology_enrichment_disease_v019_2=DOID:2394,9.33e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0000914!2.72e-18!83;UBERON:0002329!2.72e-18!83;UBERON:0003077!2.72e-18!83;UBERON:0003059!2.72e-18!83;UBERON:0007282!2.72e-18!83;UBERON:0009618!2.72e-18!83;UBERON:0007285!2.72e-18!83;UBERON:0004290!9.47e-17!70;UBERON:0002385!7.41e-16!63;UBERON:0001015!7.41e-16!63;UBERON:0000383!7.41e-16!63;UBERON:0001134!8.86e-16!61;UBERON:0002036!8.86e-16!61;UBERON:0003082!8.86e-16!61;UBERON:0000486!7.41e-13!82;UBERON:0005256!7.43e-13!143;UBERON:0002100!1.63e-10!216;UBERON:0000475!4.95e-09!365;UBERON:0002199!4.72e-08!45;UBERON:0002416!4.72e-08!45;UBERON:0003102!2.67e-07!95;UBERON:0004872!3.52e-07!84;UBERON:0003104!9.69e-07!238;UBERON:0009142!9.69e-07!238 | |ontology_enrichment_uberon=UBERON:0000914!2.72e-18!83;UBERON:0002329!2.72e-18!83;UBERON:0003077!2.72e-18!83;UBERON:0003059!2.72e-18!83;UBERON:0007282!2.72e-18!83;UBERON:0009618!2.72e-18!83;UBERON:0007285!2.72e-18!83;UBERON:0004290!9.47e-17!70;UBERON:0002385!7.41e-16!63;UBERON:0001015!7.41e-16!63;UBERON:0000383!7.41e-16!63;UBERON:0001134!8.86e-16!61;UBERON:0002036!8.86e-16!61;UBERON:0003082!8.86e-16!61;UBERON:0000486!7.41e-13!82;UBERON:0005256!7.43e-13!143;UBERON:0002100!1.63e-10!216;UBERON:0000475!4.95e-09!365;UBERON:0002199!4.72e-08!45;UBERON:0002416!4.72e-08!45;UBERON:0003102!2.67e-07!95;UBERON:0004872!3.52e-07!84;UBERON:0003104!9.69e-07!238;UBERON:0009142!9.69e-07!238 | ||
|ontology_enrichment_uberon_v019=UBERON:0002384;7.52e-10;198!UBERON:0001013;4.97e-07;14!UBERON:0003688;7.23e-07;6!UBERON:0002358;7.23e-07;6!UBERON:0003684;7.23e-07;6!UBERON:0001178;7.23e-07;6 | |ontology_enrichment_uberon_v019=UBERON:0002384;7.52e-10;198!UBERON:0001013;4.97e-07;14!UBERON:0003688;7.23e-07;6!UBERON:0002358;7.23e-07;6!UBERON:0003684;7.23e-07;6!UBERON:0001178;7.23e-07;6 | ||
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| ||
|short_description=p22@COL1A1 | |short_description=p22@COL1A1 | ||
}} | }} |
Latest revision as of 00:47, 16 September 2015
Short description: | p22@COL1A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_22_at_COL1A1_5end |
Coexpression cluster: | C59_Smooth_Fibroblast_Mesenchymal_tenocyte_Ewing_skin_hepatic |
Association with transcript: | -18bp_to_ENST00000463440_5end |
EntrezGene: | COL1A1 |
HGNC: | 2197 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 2.25e-26 | 76 |
multi fate stem cell | 1.84e-17 | 427 |
muscle precursor cell | 6.08e-17 | 58 |
myoblast | 6.08e-17 | 58 |
multi-potent skeletal muscle stem cell | 6.08e-17 | 58 |
somatic stem cell | 1.82e-16 | 433 |
muscle cell | 5.66e-16 | 55 |
stem cell | 3.36e-15 | 441 |
electrically responsive cell | 6.11e-13 | 61 |
electrically active cell | 6.11e-13 | 61 |
smooth muscle cell | 6.84e-12 | 43 |
smooth muscle myoblast | 6.84e-12 | 43 |
connective tissue cell | 5.36e-09 | 361 |
preadipocyte | 8.99e-09 | 12 |
stromal cell | 9.97e-09 | 28 |
skin fibroblast | 4.56e-08 | 23 |
cardiocyte | 4.97e-08 | 16 |
mesenchymal cell | 1.67e-07 | 354 |
extracellular matrix secreting cell | 2.38e-07 | 15 |
vascular associated smooth muscle cell | 7.15e-07 | 32 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 9.33e-07 | 14 |