FFCP PHASE1:Hg19::chr2:55277453..55277464,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=57142 | |EntrezGene=57142 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=14085 | |HGNC=14085 | ||
|TSSclassifier=strong | |||
|UniProt=F8WAM4 | |UniProt=F8WAM4 | ||
|association_with_transcript=-17bp_to_ENST00000354474_5end | |association_with_transcript=-17bp_to_ENST00000354474_5end | ||
|cluster_id=chr2:55277453..55277464,- | |||
|coexpression_cluster_id=C1911 | |coexpression_cluster_id=C1911 | ||
|description=CAGE_peak_7_at_RTN4_5end | |description=CAGE_peak_7_at_RTN4_5end | ||
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|ontology_enrichment_celltype=CL:0000055!2.97e-27!180;CL:0002371!1.52e-20!591;CL:0000057!1.01e-19!75;CL:0000222!1.72e-19!119;CL:0000144!3.14e-19!625;CL:0000680!3.68e-16!57;CL:0000056!3.68e-16!57;CL:0000355!3.68e-16!57;CL:0000183!4.16e-15!59;CL:0000187!9.27e-15!54;CL:0000192!1.94e-14!42;CL:0000514!1.94e-14!42;CL:0000548!1.97e-14!679;CL:0000004!1.97e-14!679;CL:0000255!1.97e-14!679;CL:0000012!6.83e-14!682;CL:0000359!3.28e-13!32;CL:0000220!6.13e-12!246;CL:0000393!1.31e-11!60;CL:0000211!1.31e-11!60;CL:0002321!1.45e-11!248;CL:0000048!8.81e-11!430;CL:0000723!1.09e-10!436;CL:0000034!1.00e-09!444;CL:0002620!2.55e-07!23;CL:0000136!5.80e-07!15 | |ontology_enrichment_celltype=CL:0000055!2.97e-27!180;CL:0002371!1.52e-20!591;CL:0000057!1.01e-19!75;CL:0000222!1.72e-19!119;CL:0000144!3.14e-19!625;CL:0000680!3.68e-16!57;CL:0000056!3.68e-16!57;CL:0000355!3.68e-16!57;CL:0000183!4.16e-15!59;CL:0000187!9.27e-15!54;CL:0000192!1.94e-14!42;CL:0000514!1.94e-14!42;CL:0000548!1.97e-14!679;CL:0000004!1.97e-14!679;CL:0000255!1.97e-14!679;CL:0000012!6.83e-14!682;CL:0000359!3.28e-13!32;CL:0000220!6.13e-12!246;CL:0000393!1.31e-11!60;CL:0000211!1.31e-11!60;CL:0002321!1.45e-11!248;CL:0000048!8.81e-11!430;CL:0000723!1.09e-10!436;CL:0000034!1.00e-09!444;CL:0002620!2.55e-07!23;CL:0000136!5.80e-07!15 | ||
|ontology_enrichment_celltype_v019=CL:0000359;1.67e-12;32!CL:0000192;5.21e-11;43!CL:0000057;7.86e-09;73!CL:0000187;2.02e-08;55!CL:0002620;2.10e-07;23 | |ontology_enrichment_celltype_v019=CL:0000359;1.67e-12;32!CL:0000192;5.21e-11;43!CL:0000057;7.86e-09;73!CL:0000187;2.02e-08;55!CL:0002620;2.10e-07;23 | ||
|ontology_enrichment_celltype_v019_2=CL:0000222,3.75e-20,121;CL:0000057,4.20e-20,76;CL:0000680,1.24e-16,58;CL:0000056,1.24e-16,58;CL:0000355,1.24e-16,58;CL:0000187,3.19e-15,55;CL:0000192,6.45e-15,43;CL:0000514,6.45e-15,43;CL:0000359,3.28e-13,32;CL:0002321,4.77e-12,250;CL:0000393,4.96e-12,61;CL:0000211,4.96e-12,61;CL:0000048,1.86e-11,427;CL:0000723,2.33e-11,433;CL:0000034,2.33e-10,441;CL:0002620,2.55e-07,23;CL:0000136,5.80e-07,15 | |||
|ontology_enrichment_development_v019=CL:0000514;5.21e-11;43!CL:0000355;6.93e-09;58 | |ontology_enrichment_development_v019=CL:0000514;5.21e-11;43!CL:0000355;6.93e-09;58 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!1.60e-18!83;UBERON:0002329!1.60e-18!83;UBERON:0003077!1.60e-18!83;UBERON:0003059!1.60e-18!83;UBERON:0007282!1.60e-18!83;UBERON:0009618!1.60e-18!83;UBERON:0007285!1.60e-18!83;UBERON:0000486!4.36e-17!82;UBERON:0002049!9.17e-17!79;UBERON:0007798!9.17e-17!79;UBERON:0004290!1.08e-15!70;UBERON:0001637!2.15e-15!42;UBERON:0003509!2.15e-15!42;UBERON:0004572!2.15e-15!42;UBERON:0000475!6.47e-15!365;UBERON:0000055!3.62e-14!69;UBERON:0004573!7.50e-14!33;UBERON:0004571!7.50e-14!33;UBERON:0001981!8.66e-14!60;UBERON:0007500!8.66e-14!60;UBERON:0004537!8.66e-14!60;UBERON:0006965!8.66e-14!60;UBERON:0001134!1.44e-13!61;UBERON:0002036!1.44e-13!61;UBERON:0003082!1.44e-13!61;UBERON:0004872!1.64e-13!84;UBERON:0000467!6.47e-13!625;UBERON:0000468!1.14e-12!659;UBERON:0002385!1.37e-12!63;UBERON:0001015!1.37e-12!63;UBERON:0000383!1.37e-12!63;UBERON:0000480!1.49e-12!626;UBERON:0005256!2.69e-12!143;UBERON:0004535!2.39e-11!110;UBERON:0002100!1.25e-10!216;UBERON:0000119!1.52e-10!312;UBERON:0001009!2.05e-10!113;UBERON:0003102!2.98e-10!95;UBERON:0003914!6.26e-10!118;UBERON:0000483!6.68e-10!309;UBERON:0000490!2.60e-09!138;UBERON:0002204!1.46e-08!167;UBERON:0002199!1.56e-08!45;UBERON:0002416!1.56e-08!45;UBERON:0000947!1.75e-08!21;UBERON:0010191!1.75e-08!21;UBERON:0000923!1.22e-07!604;UBERON:0005291!1.22e-07!604;UBERON:0006598!1.22e-07!604;UBERON:0002532!1.22e-07!604;UBERON:0002050!2.03e-07!605;UBERON:0005423!2.03e-07!605;UBERON:0004111!2.87e-07!241;UBERON:0002097!3.55e-07!40;UBERON:0000926!5.07e-07!448;UBERON:0004120!5.07e-07!448;UBERON:0006603!5.07e-07!448;UBERON:0000922!9.37e-07!612 | |ontology_enrichment_uberon=UBERON:0000914!1.60e-18!83;UBERON:0002329!1.60e-18!83;UBERON:0003077!1.60e-18!83;UBERON:0003059!1.60e-18!83;UBERON:0007282!1.60e-18!83;UBERON:0009618!1.60e-18!83;UBERON:0007285!1.60e-18!83;UBERON:0000486!4.36e-17!82;UBERON:0002049!9.17e-17!79;UBERON:0007798!9.17e-17!79;UBERON:0004290!1.08e-15!70;UBERON:0001637!2.15e-15!42;UBERON:0003509!2.15e-15!42;UBERON:0004572!2.15e-15!42;UBERON:0000475!6.47e-15!365;UBERON:0000055!3.62e-14!69;UBERON:0004573!7.50e-14!33;UBERON:0004571!7.50e-14!33;UBERON:0001981!8.66e-14!60;UBERON:0007500!8.66e-14!60;UBERON:0004537!8.66e-14!60;UBERON:0006965!8.66e-14!60;UBERON:0001134!1.44e-13!61;UBERON:0002036!1.44e-13!61;UBERON:0003082!1.44e-13!61;UBERON:0004872!1.64e-13!84;UBERON:0000467!6.47e-13!625;UBERON:0000468!1.14e-12!659;UBERON:0002385!1.37e-12!63;UBERON:0001015!1.37e-12!63;UBERON:0000383!1.37e-12!63;UBERON:0000480!1.49e-12!626;UBERON:0005256!2.69e-12!143;UBERON:0004535!2.39e-11!110;UBERON:0002100!1.25e-10!216;UBERON:0000119!1.52e-10!312;UBERON:0001009!2.05e-10!113;UBERON:0003102!2.98e-10!95;UBERON:0003914!6.26e-10!118;UBERON:0000483!6.68e-10!309;UBERON:0000490!2.60e-09!138;UBERON:0002204!1.46e-08!167;UBERON:0002199!1.56e-08!45;UBERON:0002416!1.56e-08!45;UBERON:0000947!1.75e-08!21;UBERON:0010191!1.75e-08!21;UBERON:0000923!1.22e-07!604;UBERON:0005291!1.22e-07!604;UBERON:0006598!1.22e-07!604;UBERON:0002532!1.22e-07!604;UBERON:0002050!2.03e-07!605;UBERON:0005423!2.03e-07!605;UBERON:0004111!2.87e-07!241;UBERON:0002097!3.55e-07!40;UBERON:0000926!5.07e-07!448;UBERON:0004120!5.07e-07!448;UBERON:0006603!5.07e-07!448;UBERON:0000922!9.37e-07!612 | ||
|ontology_enrichment_uberon_v019=UBERON:0004573;9.92e-13;33!UBERON:0004571;9.92e-13;33!UBERON:0001637;2.53e-11;42!UBERON:0003509;2.53e-11;42!UBERON:0004572;2.53e-11;42!UBERON:0007500;7.08e-09;56!UBERON:0001981;7.08e-09;56!UBERON:0004537;7.08e-09;56!UBERON:0000947;1.58e-08;21!UBERON:0010191;1.58e-08;21!UBERON:0000055;8.98e-08;65!UBERON:0002049;1.85e-07;75!UBERON:0007798;1.85e-07;75 | |ontology_enrichment_uberon_v019=UBERON:0004573;9.92e-13;33!UBERON:0004571;9.92e-13;33!UBERON:0001637;2.53e-11;42!UBERON:0003509;2.53e-11;42!UBERON:0004572;2.53e-11;42!UBERON:0007500;7.08e-09;56!UBERON:0001981;7.08e-09;56!UBERON:0004537;7.08e-09;56!UBERON:0000947;1.58e-08;21!UBERON:0010191;1.58e-08;21!UBERON:0000055;8.98e-08;65!UBERON:0002049;1.85e-07;75!UBERON:0007798;1.85e-07;75 | ||
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| ||
|short_description=p7@RTN4 | |short_description=p7@RTN4 | ||
}} | }} |
Latest revision as of 17:01, 17 September 2015
Short description: | p7@RTN4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_RTN4_5end |
Coexpression cluster: | C1911_Smooth_mesenchymal_Fibroblast_leiomyoma_Preadipocyte_Adipocyte_osteoclastoma |
Association with transcript: | -17bp_to_ENST00000354474_5end |
EntrezGene: | RTN4 |
HGNC: | 14085 |
UniProt: | F8WAM4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 3.75e-20 | 121 |
fibroblast | 4.20e-20 | 76 |
muscle precursor cell | 1.24e-16 | 58 |
myoblast | 1.24e-16 | 58 |
multi-potent skeletal muscle stem cell | 1.24e-16 | 58 |
muscle cell | 3.19e-15 | 55 |
smooth muscle cell | 6.45e-15 | 43 |
smooth muscle myoblast | 6.45e-15 | 43 |
vascular associated smooth muscle cell | 3.28e-13 | 32 |
embryonic cell | 4.77e-12 | 250 |
electrically responsive cell | 4.96e-12 | 61 |
electrically active cell | 4.96e-12 | 61 |
multi fate stem cell | 1.86e-11 | 427 |
somatic stem cell | 2.33e-11 | 433 |
stem cell | 2.33e-10 | 441 |
skin fibroblast | 2.55e-07 | 23 |
fat cell | 5.80e-07 | 15 |