Template:Macroape 1083: Difference between revisions

Latest revision as of 10:20, 22 January 2013

Full Name: {{{name}}}

Motif matrix

{{{PWM}}}

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon

TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya

No results for this motif

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-== p-values for sample ==
+== Sample specificity ==
 {{#info:The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon}}
 <html>
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 var samples = ['Adipocyte%20-%20breast%2c%20donor1.CNhs11051.11376-118A8','Adipocyte%20-%20breast%2c%20donor2.CNhs11969.11327-117E4','Adipocyte%20-%20omental%2c%20donor1.CNhs11054.11473-119C6','Adipocyte%20-%20omental%2c%20donor2.CNhs12067.11474-119C7','Adipocyte%20-%20omental%2c%20donor3.CNhs12068.11475-119C8','Adipocyte%20-%20perirenal%2c%20donor1.CNhs12069.11476-119C9','Adipocyte%20-%20subcutaneous%2c%20donor1.CNhs12494.11259-116F8','Adipocyte%20-%20subcutaneous%2c%20donor2.CNhs11371.11336-117F4','Adipocyte%20-%20subcutaneous%2c%20donor3.CNhs12017.11408-118E4','Alveolar%20Epithelial%20Cells%2c%20donor1.CNhs11325.11510-119G7','Alveolar%20Epithelial%20Cells%2c%20donor2.CNhs12084.11590-120G6','Amniotic%20Epithelial%20Cells%2c%20donor1.CNhs11341.11533-120A3','Amniotic%20Epithelial%20Cells%2c%20donor3.CNhs12125.11694-123A2','Anulus%20Pulposus%20Cell%2c%20donor1.CNhs10876.11248-116E6','Anulus%20Pulposus%20Cell%2c%20donor2.CNhs12064.11463-119B5','Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr00min%2c%20biol_rep1%20%28LK1%29.CNhs13339.12642-134G5','Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr00min%2c%20biol_rep2%20%28LK2%29.CNhs13358.12740-135I4','Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr00min%2c%20biol_rep1%20%28LK31%29.CNhs13349.12652-134H6','Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr00min%2c%20biol_rep2%20%28LK32%29.CNhs13369.12750-136A5','Astrocyte%20-%20cerebellum%2c%20donor1.CNhs11321.11500-119F6','Astrocyte%20-%20cerebellum%2c%20donor2.CNhs12081.11580-120F5','Astrocyte%20-%20cerebellum%2c%20donor3.CNhs12117.11661-122F5','Astrocyte%20-%20cerebral%20cortex%2c%20donor1.CNhs10864.11235-116D2','Astrocyte%20-%20cerebral%20cortex%2c%20donor2.CNhs11960.11316-117D2','Astrocyte%20-%20cerebral%20cortex%2c%20donor3.CNhs12005.11392-118C6','B%20lymphoblastoid%20cell%20line%3a%20GM12878%20ENCODE%2c%20biol_rep1.CNhs12331.10821-111C2','B%20lymphoblastoid%20cell%20line%3a%20GM12878%20ENCODE%2c%20biol_rep2.CNhs12332.10822-111C3','B%20lymphoblastoid%20cell%20line%3a%20GM12878%20ENCODE%2c%20biol_rep3.CNhs12333.10823-111C4','Basophils%2c%20donor1.CNhs12546.12241-129G9','Basophils%2c%20donor2.CNhs12563.12242-129H1','Basophils%2c%20donor3.CNhs12575.12243-129H2','Bronchial%20Epithelial%20Cell%2c%20donor4.CNhs12054.11453-119A4','Bronchial%20Epithelial%20Cell%2c%20donor5.CNhs12058.11457-119A8','Bronchial%20Epithelial%20Cell%2c%20donor6.CNhs12062.11461-119B3','Burkitt%27s%20lymphoma%20cell%20line%3aDAUDI.CNhs10739.10422-106C8','Burkitt%27s%20lymphoma%20cell%20line%3aRAJI.CNhs11268.10476-106I8','CD133%2b%20stem%20cells%20-%20adult%20bone%20marrow%20derived%2c%20pool1.CNhs12552.12224-129F1','CD14%2b%20Monocytes%2c%20donor1.CNhs10852.11224-116B9','CD14%2b%20Monocytes%2c%20donor2.CNhs11954.11305-117B9','CD14%2b%20Monocytes%2c%20donor3.CNhs11997.11381-118B4','CD14%2b%20monocyte%20derived%20endothelial%20progenitor%20cells%2c%20donor1.CNhs10858.11229-116C5','CD14%2b%20monocyte%20derived%20endothelial%20progenitor%20cells%2c%20donor2.CNhs11897.11310-117C5','CD14%2b%20monocyte%20derived%20endothelial%20progenitor%20cells%2c%20donor3.CNhs11904.11386-118B9','CD14%2b%20monocytes%20-%20mock%20treated%2c%20donor1.CNhs13468.11863-125A9','CD14%2b%20monocytes%20-%20mock%20treated%2c%20donor2.CNhs13484.11873-125C1','CD14%2b%20monocytes%20-%20mock%20treated%2c%20donor3.CNhs13491.11883-125D2','CD14%2b%20monocytes%20-%20treated%20with%20B-glucan%2c%20donor1.CNhs13474.11869-125B6','CD14%2b%20monocytes%20-%20treated%20with%20B-glucan%2c%20donor2.CNhs13489.11879-125C7','CD14%2b%20monocytes%20-%20treated%20with%20B-glucan%2c%20donor3.CNhs13495.11889-125D8','CD14%2b%20monocytes%20-%20treated%20with%20BCG%2c%20donor1.CNhs13465.11860-125A6','CD14%2b%20monocytes%20-%20treated%20with%20BCG%2c%20donor2.CNhs13475.11870-125B7','CD14%2b%20monocytes%20-%20treated%20with%20BCG%2c%20donor3.CNhs13543.11880-125C8','CD14%2b%20monocytes%20-%20treated%20with%20Candida%2c%20donor1.CNhs13473.11868-125B5','CD14%2b%20monocytes%20-%20treated%20with%20Candida%2c%20donor2.CNhs13488.11878-125C6','CD14%2b%20monocytes%20-%20treated%20with%20Candida%2c%20donor3.CNhs13494.11888-125D7','CD14%2b%20monocytes%20-%20treated%20with%20Cryptococcus%2c%20donor1.CNhs13472.11867-125B4','CD14%2b%20monocytes%20-%20treated%20with%20Cryptococcus%2c%20donor2.CNhs13487.11877-125C5','CD14%2b%20monocytes%20-%20treated%20with%20Cryptococcus%2c%20donor3.CNhs13546.11887-125D6','CD14%2b%20monocytes%20-%20treated%20with%20Group%20A%20streptococci%2c%20donor1.CNhs13469.11864-125B1','CD14%2b%20monocytes%20-%20treated%20with%20Group%20A%20streptococci%2c%20donor2.CNhs13532.11874-125C2','CD14%2b%20monocytes%20-%20treated%20with%20Group%20A%20streptococci%2c%20donor3.CNhs13492.11884-125D3','CD14%2b%20monocytes%20-%20treated%20with%20IFN%20%2b%20N-hexane%2c%20donor1.CNhs13466.11861-125A7','CD14%2b%20monocytes%20-%20treated%20with%20IFN%20%2b%20N-hexane%2c%20donor2.CNhs13476.11871-125B8','CD14%2b%20monocytes%20-%20treated%20with%20IFN%20%2b%20N-he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hs12340.11523-119I2','Hepatocyte%2c%20donor2.CNhs12349.11603-120I1','Hepatocyte%2c%20donor3.CNhs12626.11684-122I1','Hodgkin%27s%20lymphoma%20cell%20line%3aHD-Mar2.CNhs11715.10435-106E3','Intestinal%20epithelial%20cells%20%28polarized%29%2c%20donor1.CNhs10875.11246-116E4','Iris%20Pigment%20Epithelial%20Cells%2c%20donor1.CNhs12596.11530-119I9','Keratinocyte%20-%20epidermal%2c%20donor1.CNhs11064.11272-116H3','Keratinocyte%20-%20epidermal%2c%20donor2.CNhs11381.11349-117G8','Keratinocyte%20-%20epidermal%2c%20donor3.CNhs12031.11421-118F8','Keratinocyte%20-%20oral%2c%20donor1.CNhs10879.11251-116E9','Keratocytes%2c%20donor1.CNhs11337.11527-119I6','Keratocytes%2c%20donor2.CNhs12095.11607-120I5','Lens%20Epithelial%20Cells%2c%20donor1.CNhs12342.11529-119I8','Lens%20Epithelial%20Cells%2c%20donor2.CNhs12568.11609-120I7','Lens%20Epithelial%20Cells%2c%20donor3.CNhs12572.11690-122I7','Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr00min%2c%20biol_rep1%20%28MM%20XIX%20-%201%29.CNhs11936.12260-130A1','Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr00min%2c%20biol_rep2%20%28MM%20XIV%20-%201%29.CNhs13157.12382-131E6','Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr00min%2c%20biol_rep3%20%28MM%20XXII%20-%201%20%29.CNhs13276.12504-133A2','MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr00min%2c%20biol_rep2.CNhs12475.13097-140D1','MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr00min%2c%20biol_rep3.CNhs12703.13163-141B4','Macrophage%20-%20monocyte%20derived%2c%20donor1.CNhs10861.11232-116C8','Macrophage%20-%20monocyte%20derived%2c%20donor2.CNhs11899.11313-117C8','Macrophage%20-%20monocyte%20derived%2c%20donor3.CNhs12003.11389-118C3','Mallassez-derived%20cells%2c%20donor1%20%28MZH3%29.CNhs12538.12142-128E9','Mallassez-derived%20cells%2c%20donor2.CNhs13550.11929-125I3','Mallassez-derived%20cells%2c%20donor3.CNhs13551.11930-125I4','Mammary%20Epithelial%20Cell%2c%20donor1.CNhs11077.11273-116H4','Mammary%20Epithelial%20Cell%2c%20donor2.CNhs11382.11350-117G9','Mammary%20Epithelial%20Cell%2c%20donor3.CNhs12032.11422-118F9','Mast%20cell%20-%20stimulated%2c%20donor1.CNhs11073.11487-119E2','Mast%20cell%2c%20donor1.CNhs12566.11563-120D6','Mast%20cell%2c%20donor2.CNhs12594.11565-120D8','Mast%20cell%2c%20donor3.CNhs12593.11566-120D9','Mast%20cell%2c%20donor4.CNhs12592.11567-120E1','Melanocyte%20-%20dark%2c%20donor3.CNhs12570.11663-122F7','Melanocyte%20-%20light%2c%20donor1.CNhs11303.11274-116H5','Melanocyte%20-%20light%2c%20donor2.CNhs11383.11351-117H1','Melanocyte%20-%20light%2c%20donor3.CNhs12033.11423-118G1','Melanocyte%2c%20donor1%20%28MC%2b1%29.CNhs12816.12641-134G4','Melanocyte%2c%20donor2%20%28MC%2b2%29.CNhs13156.12739-135I3','Melanocyte%2c%20donor3%20%28MC%2b3%29.CNhs13406.12837-137B2','Meningeal%20Cells%2c%20donor1.CNhs11320.11493-119E8','Meningeal%20Cells%2c%20donor2.CNhs12080.11573-120E7','Meningeal%20Cells%2c%20donor3.CNhs12731.11654-122E7','Mesenchymal%20Stem%20Cells%20-%20Wharton%27s%20Jelly%2c%20donor1.CNhs11057.11548-120B9','Mesenchymal%20Stem%20Cells%20-%20adipose%2c%20donor1.CNhs11345.11537-120A7','Mesenchymal%20Stem%20Cells%20-%20adipose%2c%20donor3.CNhs12922.11698-123A6','Mesenchymal%20Stem%20Cells%20-%20amniotic%20membrane%2c%20donor1.CNhs11349.11547-120B8','Mesenchymal%20Stem%20Cells%20-%20amniotic%20membrane%2c%20donor2.CNhs12104.11627-122B7','Mesenchymal%20Stem%20Cells%20-%20bone%20marrow%2c%20donor1.CNhs11344.11536-120A6','Mesenchymal%20Stem%20Cells%20-%20bone%20marrow%2c%20donor2.CNhs12100.11616-122A5','Mesenchymal%20Stem%20Cells%20-%20bone%20marrow%2c%20donor3.CNhs12126.11697-123A5','Mesenchymal%20Stem%20Cells%20-%20hepatic%2c%20donor2.CNhs12730.11618-122A7','Mesenchymal%20Stem%20Cells%20-%20umbilical%2c%20donor1.CNhs11347.11539-120A9','Mesenchymal%20Stem%20Cells%20-%20umbilical%2c%20donor3.CNhs12127.11700-123A8','Mesenchymal%20stem%20cells%20-%20adipose%2c%20donor0.CNhs10844.11217-116B2','Mesenchymal%20stem%20cells%20-%20hepatic%2c%20donor0.CNhs10845.11218-116B3','Mesenchymal%20stem%20cells%20-%20umbilical%2c%20donor0.CNhs12492.11214-116A8','Mesothelial%20Cells%2c%20donor1.CNhs10850.11247-116E5','Mesothelial%20Cells%2c%20donor2.CNhs12197.12156-128G5','Mesothelial%20Cells%2c%20donor3.CNhs12012.11402-118D7','Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2000hr00min%2c%20donor2%20%28150_120%3aUd_0h%29.CNhs13646.13317-143A5','Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2000hr00min%2c%20donor3%20%28536_119%3aUd_0h%29.CNhs13650.13323-143B2','Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2000hr00min%2c%20donor4%20%28227_121%3aUd_0h%29.CNhs13639.13311-142I8','Multipotent%20Cord%20Blood%20Unrestricted%20Somatic%20Stem%20Cells%2c%20donor1.CNhs11350.11549-120C1','Multipotent%20Cord%20Blood%20Unrestricted%20Somatic%20Stem%20Cells%2c%20donor2.CNhs12105.11629-122B9','Myoblast%20differentiation%20to%20myotubes%2c%20day00%2c%20c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-var pval = [</html>{{{macroape_1083_filtered_pvalues}}}<html>];
+var pvals = ['</html>{{#replace:{{{macroape_1083_sample_pvalues}}}|!|','}}<html>'];
 var data = [];
 for(i1=0;i1<samples.length;i1++){
-data.push([samples[i1],pval[i1]]);
+pval = pvals[i1].split(";");
+data.push([samples[i1],pval[1]]);
 }
@@ Line 35: / Line 50: @@
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 "aaData": data,
-"aoColumns": [{ "sTitle": "FF samples", "fnRender": function(obj) {
+"aoColumns": [{ "sTitle": "FF samples",  "bSortable": false, "fnRender": function(obj) {
 		return sReturn = '<a href="/resource_browser/index.php/FF:'+obj.aData[ obj.iDataColumn ].split('.').pop()+'">'+decodeURIComponent(obj.aData[ obj.iDataColumn ])+'</a>';
-		} },{ "sTitle": "p-value", "sWidth": "50pt" }],
+		} },{ "sTitle": "p-value",  "sType": "numeric", "sWidth": "50pt" }],
 "aaSorting": [[ 1, "asc" ]],
 });
@@ Line 44: / Line 59: @@
 <table id="tfbs_overexpression_table"></table>
 </html>
+== TomTom analysis ==
+{{#info:   <br>Analyst: Michiel de Hoon and Hiroko Ohmiya}}
+{{#if: {{#pos:{{{tomtom_result}}}|;}} |
+<html>
+<script type="text/javascript">
+$(document).ready(function() {
+    $('#tomtom_results').dataTable({
+		"sScrollY": "300px",
+		"bPaginate": false,
+		"bScrollCollapse": true,
+		"iDisplayLength": -1,
+		"aaSorting": [[2,'asc']],
+		"aoColumnDefs": [{"fnRender": function ( o, val ) {var elem = o.aData[0].split("#"); return "<a href=\"http://jaspar.genereg.net/cgi-bin/jaspar_db.pl?ID="+elem[1]+"&rm=present&collection=CORE\">"+elem[0]+"</a>";}, "aTargets": [ 0 ]}, { "sWidth": "150px", "sType": "numeric", "aTargets": [2,3,4] }]
+});
+$('#tomtom_results_wrapper .dataTables_scrollHeadInner tr').css("height", "100px").css("vertical-align", "bottom").css("text-align","left");
+});
+</script>
+</html>
+<table id="tomtom_results"><html><thead></html>
+<tr><th><div class="rotate90"><p>Target_ID</p></div></th><th><div class="rotate90"><p style="width:1px;">Optimal_offset</p></div></th><th><div class="rotate90"><p>p-value</p></div></th><th><div class="rotate90"><p>E-value</p></div></th><th><div class="rotate90"><p>q-value</p></div></th><th><div  class="rotate90"><p style="width:1px;">Overlap</p></div></th><th><div class="rotate90_2">Query<br>consensus</div></th><th ><div class="rotate90_2">Target<br>consensus</div></th><th><div  class="rotate90"><p style="width:1px;">Orientation</p></div></th></tr><html></thead><tbody></html>
+{{#arraymap:{{{tomtom_result}}}|!|$
+|<tr><td>{{#replace:$|;|</td><td>}}</td></tr>
+|}}
+<html></tbody></html></table>
+|No results for this motif
+}}
+<!--
+{{#arraymap:{{{macroape_1083_sample_pvalues}}}|!|$
+|{{#set:Macroape_1083_sample_pvalue=$}}
+}}
+-->
+[[Category:MacroAPE_1083]]

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From FANTOM5_SSTAR

Latest revision as of 10:20, 22 January 2013

Sample specificity

TomTom analysis

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