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MacroAPE 1083:1-GGAGGAGRAGG: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;210.168;0.834;622.164;0.834!2;110.088;29.19;693.888;0.834!3;651.354;0.834;180.978;0.834!4;0.834;0.834;831.498;0.834!5;58.38;0.834;773.952;0....")
 
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0H6;0.548288!10828-111C9;0.561663!10788-110H5;0.725392!10792-110H9;0.812685!10765-110E9;0.290802!10829-111D1;0.748176!10830-111D2;0.886418!10831-111D3;0.811899!10832-111D4;0.527905!10833-111D5;0.997743!10764-110E8;0.999408!10770-110F5;0.643115!10399-106A3;0.686072!10400-106A4;0.223572!10405-106A9;0.314149!10834-111D6;0.297302!10835-111D7;0.894054!10836-111D8;0.228316!10837-111D9;0.454423!10699-109G6;0.823593!10802-111A1;0.507388!10796-110I4;0.717808!10010-101C1;0.917242!10810-111A9;0.15914!10421-106C7;0.00169074!10708-109H6;0.971206!12235-129G3;0.093568!12236-129G4;0.662574!12237-129G5;0.967642!10167-103B5;0.881241!10151-102I7;0.915631!10428-106D5;0.498801!10795-110I3;0.443284!10805-111A4;0.689612!10052-101G7;0.712199!10189-103D9;0.717594!10589-108D4;0.40265!10425-106D2;0.0921725!10427-106D4;0.467883!10702-109G9;0.571148!10432-106D9;0.757022!10496-107C1;0.904892!10718-109I7;0.159564!10011-101C2;0.677014!10053-101G8;0.213243!10686-109F2;0.240521!10084-102B3;0.231958!10012-101C3;0.66064!10085-102B4;0.435027!10482-107A5;0.974388!10419-106C5;0.656294!10080-102A8;0.91804!10760-110E4;0.30008!10709-109H7;0.55423!10710-109H8;0.334072!10703-109H1;0.915029!10719-109I8;0.379506!10642-109A3;0.106018!10177-103C6;0.209497!10164-103B2;0.606793!10173-103C2;0.595111!10166-103B4;0.637714!10083-102B2;0.627898!10188-103D8;0.697136!10552-107I3;0.391455!10553-107I4;0.0115091!10013-101C4;0.818207!10536-107G5;0.208944!10618-108G6;0.00191232!10423-106C9;0.163163!10785-110H2;0.324609!12238-129G6;0.669532!12239-129G7;0.891076!12240-129G8;0.706143!10416-106C2;0.750849!10801-110I9;0.710384!10766-110F1;0.978344!10824-111C5;0.244126!10825-111C6;0.41024!10826-111C7;0.428535!10454-106G4;0.642906!10409-106B4;0.391248!10638-108I8;0.736158!10636-108I6;0.0845321!10513-107D9;0.0820528!10420-106C6;0.49245!10082-102B1;0.86188!10014-101C5;0.541745!10070-101I7;0.336863!10452-106G2;0.299161!10453-106G3;0.856385!10449-106F8;0.961722!10042-101F6;0.985226!10069-101I6;0.73609!10193-103E4;0.545361!10631-108I1;0.978681!10438-106E6;0.488193!10488-107B2;0.809115!10196-103E7;0.0883277!10071-101I8;0.00308963!10071-101I8;0.717805!10041-101F5;0.894826!10451-106G1;0.52498!10450-106F9;0.678094!10604-108F1;0.903353!10605-108F2;0.214704!10606-108F3;0.0508914!10603-108E9;0.187439!10497-107C2;0.255171!10448-106F7;0.918422!10643-109A4;0.0140971!10426-106D3;0.782009!10431-106D8;0.868163!10197-103E8;0.903025!10443-106F2;0.238657!10815-111B5;0.171951!10816-111B6;0.0205537!10817-111B7;0.061563!10015-101C6;0.0371946!10410-106B5;0.370256!10054-101G9;0.0911772!10758-110E2;0.613052!10711-109H9;0.797492!10040-101F4;0.178789!10470-106I2;0.397217!10415-106C1;0.675838!10198-103E9;0.750749!10614-108G2;0.196119!10612-108F9;0.152859!10549-107H9;0.993406!10615-108G3;0.191306!10487-107B1;0.168024!10433-106E1;0.0194422!10688-109F4;0.14041!10444-106F3;0.908562!10444-106F3;0.433054!10485-107A8;0.538844!10413-106B8;0.513103!10175-103C4;0.0562901!10161-103A8;0.632262!12131-128D7;0.650883!10624-108H3;0.549027!10712-109I1;0.0149668!10205-103F7;0.813557!10206-103F8;0.553537!10207-103F9;0.550982!10050-101G5;0.0838741!10051-101G6;0.311099!10016-101C7;0.609585!10046-101G1;0.300191!10778-110G4;0.640493!10633-108I3;0.338163!10818-111B8;0.478896!10819-111B9;0.0199792!10820-111C1;0.0132024!10484-107A7;0.0229436!10808-111A7;0.534197!10169-103B7;0.763892!10153-102I9;0.712516!13425-144D5;0.583206!13433-144E4;0.599616!13437-144E8;0.908804!11904-125F5;0.690184!11905-125F6;0.221653!10039-101F3;0.393792!10791-110H8;0.433425!10017-101C8;0.652016!10045-101F9;0.0962874!10509-107D5;0.390702!10839-111E2;0.00451008!10692-109F8;0.251388!10079-102A7;0.254314!10078-102A6;0.826561!10721-110A1;0.367266!10569-108B2;0.00725206!10570-108B3;0.56041!10571-108B4;0.68363!10647-109A8;0.624449!10752-110D5;0.046672!10782-110G8;0.705466!10726-110A6;0.141937!10018-101C9;0.711316!10086-102B5;0.313569!10182-103D2;0.9356!10165-103B3;0.42716!10499-107C4;0.47314!10408-106B3;0.664489!10019-101D1;0.892797!10068-101I5;0.433541!10075-102A3;0.487578!10077-102A5;0.360335!10727-110A7;0.416676!10775-110G1;0.838362!10412-106B7;0.724692!12231-129F8;0.311212!12232-129F9;0.774625!12233-129G1;0.502745!12234-129G2;0.866203!10414-106B9;0.644015!10170-103B8;0.618233!10183-103D3;0.595253!10150-102I6;0.527336!10174-103C3;0.4255!10155-103A2;0.903582!10038-101F2;0.626179!10838-111E1;0.622618!10759-110E3;0.859123!10514-107E1;0.181376!10465-106H6;0.704456!10691-109F7;0.157682!10843-111E6;0.123201!10844-111E7;0.341981!11747-123G1;0.0433445!11748-123G2;0.697544!11749-123G3;0.786438!11750-123G4;0.893292!11751-123G5;0.490057!11840-124H4;0.984856!11752-123G6;0.828681!11753-123G7;0.472878!11754-123G8;0.730584!11755-123G9;0.899137!11756-123H1;0.822927!11833-124G6;0.95813!11760-123H5;0.576282!11836-124G9;0.927015!11758-123H3;0.499135!11835-124G8;0.520797!11762-123H7;0.993865!11838-124H2;0.669204!11757-123H2;0.38895!11759-123H4;0.410354!11761-123H6;0.677584!11842-124H6;0.654676!11837-124H1;0.338749!10568-108B1;0.936129!13230-141I8;0.0930378!13231-141I9;0.840697!10696-109G3;0.91272!10493-107B7;0.354688!10494-107B8;0.345095!10850-111F4;0.686584!10851-111F5;0.128254!10852-111F6;0.245886!10853-111F7;0.110767!10854-111F8;0.11118!10855-111F9;0.155652!10856-111G1;0.296705!10847-111F1;0.286998!10846-111E9;0.350604!10848-111F2;0.918288!10845-111E8;0.125133!10857-111G2;0.0517863!10858-111G3;0.0724004!10156-103A3;0.40228!11901-125F2;0.410465!11902-125F3;0.823412!11903-125F4;0.862525!10689-109F5;0.838781!10648-109A9;0.00498147!10784-110H1;0.101346!10744-110C6;0.166916!10772-110F7;0.768128!10474-106I6;0.596873!10600-108E6;0.413919!10684-109E9;0.0725106!12226-129F3;0.139844!12227-129F4;0.788039!10508-107D4;0.978101!10539-107G8;0.643427!10607-108F4;0.098088!10555-107I6;0.52608!10774-110F9;0.40348!10637-108I7;0.438134!10663-109C6;0.0560438!10728-110A8;0.0366573!10729-110A9;0.294572!10430-106D7;0.923119!10730-110B1;0.862456!10813-111B3;0.777468!10812-111B2;0.575646!10037-101F1;0.576401!10172-103C1;0.453293!10163-103B1;0.391953!10076-102A4;0.475462!10073-102A1;0.477543!10036-101E9;0.988249!10195-103E6;0.534076!10277-104E7;0.671769!10434-106E2;0.982592!10550-107I1;0.783624!10545-107H5;0.775102!10544-107H4;0.831259!10704-109H2;0.38775!10510-107D6;0.391111!10558-107I9;0.979115!10020-101D2;0.443586!10732-110B3;0.830761!10049-101G4;0.0936724!10698-109G5;0.876198!10437-106E5;0.826699!10417-106C3;0.302837!10035-101E8;0.379252!10171-103B9;0.359987!10157-103A4;0.530125!10034-101E7;0.336149!10072-101I9;0.432436!10199-103F1;0.854041!10200-103F2;0.381167!10697-109G4;0.256968!10723-110A3;0.620939!10179-103C8;0.991018!10160-103A7;0.37959!10180-103C9;0.217603!10162-103A9;0.904645!10021-101D3;0.377643!10840-111E3;0.865383!10706-109H4;0.520325!10033-101E6;0.0384341!10032-101E5;0.299572!10490-107B4;0.532559!10439-106E7;0.085415!10022-101D4;0.441651!10176-103C5;0.184469!10469-106I1;0.734852!10067-101I4;0.203929!10411-106B6;0.820869!10471-106I3;0.350174!10030-101E3;0.458727!10475-106I7;0.515686!10787-110H4;0.229989!10477-106I9;0.684488!10695-109G2;0.210439!11771-123I7;0.814695!11772-123I8;0.677903!11773-123I9;0.6186!10093-102C3;0.842538!10442-106F1;0.0768168!10442-106F1;0.02519!10201-103F3;0.0504489!10639-108I9;0.00653617!11843-124H7;0.743571!11841-124H5;0.00716847!10693-109F9;0.000188089!10436-106E4;0.167707!10483-107A6;0.392375!10282-104F3;0.562916!10023-101D5;0.7559!10066-101I3;0.524209!10065-101I2;0.913591!10800-110I8;0.315724!10610-108F7;0.511809!10841-111E4;0.278163!10541-107H1;0.061845!10842-111E5;0.640484!10562-108A4;0.504539!10024-101D6;0.878375!10064-101I1;0.153844!10609-108F6;0.535901!10048-101G3;0.958329!10781-110G7;0.396056!10181-103D1;0.695878!10159-103A6;0.764475!10056-101H2;0.440807!10737-110B8;0.841922!10025-101D7;0.728473!10044-101F8;0.435864!10424-106D1;0.450837!10463-106H4;0.991862!10616-108G4;0.832987!10486-107A9;0.22559!10062-101H8;0.100386!10202-103F4;0.879585!10158-103A5;0.112846!10441-106E9;0.793083!10031-101E4;0.420531!10063-101H9;0.691577!10063-101H9;0.780825!11763-123H8;0.819374!11765-123I1;0.662221!11768-123I4;0.856257!10807-111A6;0.706898!10790-110H7;0.483961!10798-110I6;0.697149!10786-110H3;0.0491315!10591-108D6;0.77955!10593-108D8;0.582092!10590-108D5;0.552918!10026-101D8;0.73158!10096-102C6;0.644143!10168-103B6;0.256677!10154-103A1;0.956075!10209-103G2;0.524246!10061-101H7;0.109648!10027-101D9;0.645588!10043-101F7;0.51454!10783-110G9;0.378075!10028-101E1;0.0145133!10060-101H6;0.366113!10203-103F5;0.395693!10059-101H5;0.105556!10047-101G2;0.382848!10029-101E2;0.0126985!10058-101H4;0.275091!10418-106C4;0.476432!10492-107B6;0.945086!10694-109G1;0.419898!10797-110I5;0.517688!10057-101H3;0.848411!10100-102D1;0.711098!10055-101H1;0.323639!10204-103F6;0.370059!10191-103E2;0.0130105!10563-108A5;0.100214
|name=1-GGAGGAGRAGG,CNhs13817,BestGuess:MZF1.p2.SwissRegulon.nucfreq(0.73663833101872),T:834.0(34.32%),B:11155.7(23.85%),P:1e-30
|name=1-GGAGGAGRAGG,CNhs13817,BestGuess:MZF1.p2.SwissRegulon.nucfreq(0.73663833101872),T:834.0(34.32%),B:11155.7(23.85%),P:1e-30
|tomtom_result=SP1#MA0079.2;0;7.23753e-05;0.0344506;0.0688838;10;GGAGGAGGAGG;GGGGGCGGGG;-!MZF1_5-13#MA0057.1;0;0.000148153;0.0705207;0.0705028;10;GGAGGAGGAGG;GGAGGGGGAA;+!CHA4#MA0283.1;0;0.00158095;0.752533;0.501562;8;GGAGGAGGAGG;GGCGGAGA;+!Pax4#MA0068.1;0;0.00300507;1.43041;0.715026;11;GGAGGAGGAGG;GGGGGGGGAGTGGAGTATTGGAAATTTTTC;-!Klf4#MA0039.1;-1;0.00497625;2.3687;0.947239;10;GGAGGAGGAGG;TAAAGGAAGG;+!MSN4#MA0342.1;-2;0.00955482;4.54809;0.999747;5;GGAGGAGGAGG;AGGGG;+!MSN2#MA0341.1;-2;0.0101548;4.83369;0.999747;5;GGAGGAGGAGG;AGGGG;+!RGM1#MA0366.1;-2;0.0101548;4.83369;0.999747;5;GGAGGAGGAGG;AGGGG;+!btd#MA0443.1;1;0.010724;5.10461;0.999747;9;GGAGGAGGAGG;AGGGGGCGGA;+!ZMS1#MA0441.1;0;0.0115623;5.50365;0.999747;9;GGAGGAGGAGG;TGCGGGGAA;-!SPIB#MA0081.1;0;0.0210034;9.99761;0.999747;7;GGAGGAGGAGG;AGAGGAA;+
}}
}}

Latest revision as of 14:19, 7 September 2012

Full Name: 1-GGAGGAGRAGG,CNhs13817,BestGuess:MZF1.p2.SwissRegulon.nucfreq(0.73663833101872),T:834.0(34.32%),B:11155.7(23.85%),P:1e-30

Motif matrix
POACGT
1210.1680.834622.1640.834
2110.08829.19693.8880.834
3651.3540.834180.9780.834
40.8340.834831.4980.834
558.380.834773.9520.834
6515.4120.834316.920.834
7198.4920.834633.840.834
8363.6240.834468.7080.834
9527.0880.834266.04640.032
10182.6460.834649.6860.834
11292.7340.834539.5980.834

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
SP1#MA0079.207.23753e-050.03445060.068883810GGAGGAGGAGGGGGGGCGGGG-
MZF1_5-13#MA0057.100.0001481530.07052070.070502810GGAGGAGGAGGGGAGGGGGAA+
CHA4#MA0283.100.001580950.7525330.5015628GGAGGAGGAGGGGCGGAGA+
Pax4#MA0068.100.003005071.430410.71502611GGAGGAGGAGGGGGGGGGGAGTGGAGTATTGGAAATTTTTC-
Klf4#MA0039.1-10.004976252.36870.94723910GGAGGAGGAGGTAAAGGAAGG+
MSN4#MA0342.1-20.009554824.548090.9997475GGAGGAGGAGGAGGGG+
MSN2#MA0341.1-20.01015484.833690.9997475GGAGGAGGAGGAGGGG+
RGM1#MA0366.1-20.01015484.833690.9997475GGAGGAGGAGGAGGGG+
btd#MA0443.110.0107245.104610.9997479GGAGGAGGAGGAGGGGGCGGA+
ZMS1#MA0441.100.01156235.503650.9997479GGAGGAGGAGGTGCGGGGAA-
SPIB#MA0081.100.02100349.997610.9997477GGAGGAGGAGGAGAGGAA+
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