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MacroAPE 1083:5-CCGGATTTA: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;125.922;740.638;251.844;235.596!2;8.124;900.41;270.8;174.666!3;2.708;123.214;1136.006;92.072!4;127.276;97.488;1004.668;124.568!5;824.586;101...")
 
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106G5;0.141808!10534-107G3;0.200594!10429-106D6;0.255144!10464-106H5;0.0858374!10827-111C8;0.2363!10789-110H6;0.262092!10828-111C9;0.339278!10788-110H5;0.506028!10792-110H9;0.299453!10765-110E9;0.548213!10829-111D1;0.211231!10830-111D2;0.293001!10831-111D3;0.241588!10832-111D4;0.408012!10833-111D5;0.218195!10764-110E8;0.295985!10770-110F5;0.150031!10399-106A3;0.426546!10400-106A4;0.321701!10405-106A9;0.388862!10834-111D6;0.274397!10835-111D7;0.235049!10836-111D8;0.567414!10837-111D9;0.280619!10699-109G6;0.285438!10802-111A1;0.0241725!10796-110I4;0.209233!10010-101C1;0.118481!10810-111A9;0.479221!10421-106C7;0.117232!10708-109H6;0.143013!12235-129G3;0.694711!12236-129G4;0.204048!12237-129G5;0.477062!10167-103B5;0.126644!10151-102I7;0.375463!10428-106D5;0.512601!10795-110I3;0.457558!10805-111A4;0.627482!10052-101G7;0.416671!10189-103D9;0.251744!10589-108D4;0.448835!10425-106D2;0.672157!10427-106D4;0.107008!10702-109G9;0.191347!10432-106D9;0.487719!10496-107C1;0.00722644!10718-109I7;0.00218872!10011-101C2;0.670536!10053-101G8;0.358387!10686-109F2;0.892592!10084-102B3;0.498709!10012-101C3;0.35816!10085-102B4;0.410135!10482-107A5;0.51059!10419-106C5;0.0953241!10080-102A8;0.0113774!10760-110E4;0.747281!10709-109H7;0.339618!10710-109H8;0.114266!10703-109H1;0.103643!10719-109I8;0.992028!10642-109A3;0.310913!10177-103C6;0.397879!10164-103B2;0.415135!10173-103C2;0.45361!10166-103B4;0.59738!10083-102B2;0.538617!10188-103D8;0.238028!10552-107I3;0.34011!10553-107I4;0.214519!10013-101C4;0.292857!10536-107G5;0.583016!10618-108G6;0.455179!10423-106C9;0.000507074!10785-110H2;0.0721505!12238-129G6;0.0715092!12239-129G7;0.505033!12240-129G8;0.315067!10416-106C2;0.8601!10801-110I9;0.997752!10766-110F1;0.194079!10824-111C5;0.391865!10825-111C6;0.534599!10826-111C7;0.481517!10454-106G4;0.324949!10409-106B4;0.48408!10638-108I8;0.140265!10636-108I6;0.348472!10513-107D9;0.0179232!10420-106C6;0.179032!10082-102B1;0.0652405!10014-101C5;0.432395!10070-101I7;0.280434!10452-106G2;0.554938!10453-106G3;0.0539884!10449-106F8;0.23627!10042-101F6;0.251939!10069-101I6;0.582329!10193-103E4;0.133475!10631-108I1;0.454598!10438-106E6;0.251936!10488-107B2;0.0752622!10196-103E7;0.225018!10071-101I8;0.892078!10071-101I8;0.470377!10041-101F5;0.433427!10451-106G1;0.528368!10450-106F9;0.177793!10604-108F1;0.194385!10605-108F2;0.114123!10606-108F3;0.152908!10603-108E9;0.148739!10497-107C2;0.246031!10448-106F7;0.00583431!10643-109A4;0.708251!10426-106D3;0.04189!10431-106D8;0.0323069!10197-103E8;0.254718!10443-106F2;0.288227!10815-111B5;0.837215!10816-111B6;0.355278!10817-111B7;0.320185!10015-101C6;0.40313!10410-106B5;0.580825!10054-101G9;0.191563!10758-110E2;0.323488!10711-109H9;0.321512!10040-101F4;0.185723!10470-106I2;0.435642!10415-106C1;0.165954!10198-103E9;0.43749!10614-108G2;0.503435!10612-108F9;0.156393!10549-107H9;0.120015!10615-108G3;0.0330443!10487-107B1;0.221213!10433-106E1;0.00457541!10688-109F4;0.165502!10444-106F3;0.205141!10444-106F3;0.504778!10485-107A8;0.551009!10413-106B8;0.912701!10175-103C4;0.958869!10161-103A8;0.401148!12131-128D7;0.584359!10624-108H3;0.0374508!10712-109I1;0.639242!10205-103F7;0.21228!10206-103F8;0.44426!10207-103F9;0.28438!10050-101G5;0.991648!10051-101G6;0.192736!10016-101C7;0.0502434!10046-101G1;0.136528!10778-110G4;0.43017!10633-108I3;0.395409!10818-111B8;0.0259519!10819-111B9;0.213334!10820-111C1;0.23513!10484-107A7;0.179431!10808-111A7;0.380184!10169-103B7;0.16159!10153-102I9;0.442676!13425-144D5;0.558419!13433-144E4;0.0678135!13437-144E8;0.0635779!11904-125F5;0.0928344!11905-125F6;0.142436!10039-101F3;0.0771462!10791-110H8;0.365952!10017-101C8;0.506992!10045-101F9;0.888847!10509-107D5;0.737106!10839-111E2;0.0449647!10692-109F8;0.933424!10079-102A7;0.242514!10078-102A6;0.229965!10721-110A1;0.0473679!10569-108B2;0.333079!10570-108B3;0.0320817!10571-108B4;0.0906324!10647-109A8;0.0678711!10752-110D5;0.0373565!10782-110G8;0.339811!10726-110A6;0.329611!10018-101C9;0.163007!10086-102B5;0.571426!10182-103D2;0.531132!10165-103B3;0.55124!10499-107C4;0.439803!10408-106B3;0.189911!10019-101D1;0.013249!10068-101I5;0.799477!10075-102A3;0.820529!10077-102A5;0.651057!10727-110A7;0.866667!10775-110G1;0.194607!10412-106B7;0.0945099!12231-129F8;0.00479522!12232-129F9;0.181015!12233-129G1;0.578924!12234-129G2;0.328929!10414-106B9;0.0441697!10170-103B8;0.0412726!10183-103D3;0.506359!10150-102I6;0.46796!10174-103C3;0.531038!10155-103A2;0.374937!10038-101F2;0.589704!10838-111E1;0.415938!10759-110E3;0.38166!10514-107E1;0.425285!10465-106H6;0.245545!10691-109F7;0.526365!10843-111E6;0.648931!10844-111E7;0.347826!11747-123G1;0.805193!11748-123G2;0.790225!11749-123G3;0.623423!11750-123G4;0.640739!11751-123G5;0.0682906!11840-124H4;0.0254284!11752-123G6;0.0632623!11753-123G7;0.303128!11754-123G8;0.112949!11755-123G9;0.875207!11756-123H1;0.799049!11833-124G6;0.806974!11760-123H5;0.722158!11836-124G9;0.697523!11758-123H3;0.79177!11835-124G8;0.427924!11762-123H7;0.331556!11838-124H2;0.733836!11757-123H2;0.415819!11759-123H4;0.740158!11761-123H6;0.234995!11842-124H6;0.327519!11837-124H1;0.108066!10568-108B1;0.355707!13230-141I8;0.939656!13231-141I9;0.042065!10696-109G3;0.0770238!10493-107B7;0.547757!10494-107B8;0.203179!10850-111F4;0.0044006!10851-111F5;0.707823!10852-111F6;0.698821!10853-111F7;0.877306!10854-111F8;0.505585!10855-111F9;0.834751!10856-111G1;0.246876!10847-111F1;0.793005!10846-111E9;0.511228!10848-111F2;0.793266!10845-111E8;0.527122!10857-111G2;0.00161886!10858-111G3;0.946181!10156-103A3;0.356126!11901-125F2;0.534602!11902-125F3;0.731884!11903-125F4;0.767446!10689-109F5;0.923482!10648-109A9;0.862324!10784-110H1;0.954587!10744-110C6;0.0811982!10772-110F7;0.929022!10474-106I6;0.14559!10600-108E6;0.909073!10684-109E9;0.786441!12226-129F3;0.641559!12227-129F4;0.944!10508-107D4;0.161236!10539-107G8;0.859663!10607-108F4;0.868214!10555-107I6;0.743168!10774-110F9;0.823408!10637-108I7;0.160337!10663-109C6;0.250194!10728-110A8;0.259046!10729-110A9;0.037628!10430-106D7;0.295035!10730-110B1;0.00712495!10813-111B3;0.765927!10812-111B2;0.0497946!10037-101F1;0.160113!10172-103C1;0.376104!10163-103B1;0.443906!10076-102A4;0.693188!10073-102A1;0.382755!10036-101E9;0.553901!10195-103E6;0.367692!10277-104E7;0.402408!10434-106E2;0.912247!10550-107I1;0.0205798!10545-107H5;0.429408!10544-107H4;0.0521942!10704-109H2;0.23764!10510-107D6;0.313358!10558-107I9;0.25464!10020-101D2;0.388179!10732-110B3;0.375824!10049-101G4;0.692347!10698-109G5;0.832497!10437-106E5;0.0115546!10417-106C3;0.954909!10035-101E8;0.0261176!10171-103B9;0.415388!10157-103A4;0.509859!10034-101E7;0.5243!10072-101I9;0.388787!10199-103F1;0.723765!10200-103F2;0.82608!10697-109G4;0.340016!10723-110A3;0.646843!10179-103C8;0.374406!10160-103A7;0.513358!10180-103C9;0.699312!10162-103A9;0.576437!10021-101D3;0.725384!10840-111E3;0.987828!10706-109H4;0.286998!10033-101E6;0.732812!10032-101E5;0.372196!10490-107B4;0.323623!10439-106E7;0.0723271!10022-101D4;0.0824158!10176-103C5;0.374906!10469-106I1;0.482978!10067-101I4;0.0310696!10411-106B6;0.372283!10471-106I3;0.14322!10030-101E3;0.778058!10475-106I7;0.436377!10787-110H4;0.0306545!10477-106I9;0.296264!10695-109G2;0.30386!11771-123I7;0.152484!11772-123I8;0.250122!11773-123I9;0.700081!10093-102C3;0.901956!10442-106F1;0.945134!10442-106F1;0.776418!10201-103F3;0.568915!10639-108I9;0.845418!11843-124H7;0.000740224!11841-124H5;0.851516!10693-109F9;0.415755!10436-106E4;0.0634366!10483-107A6;0.0680877!10282-104F3;0.00366302!10023-101D5;0.494754!10066-101I3;0.193756!10065-101I2;0.223004!10800-110I8;0.341721!10610-108F7;0.823062!10841-111E4;0.051491!10541-107H1;0.333556!10842-111E5;0.180513!10562-108A4;0.0673413!10024-101D6;0.831606!10064-101I1;0.86623!10609-108F6;0.59852!10048-101G3;0.414758!10781-110G7;0.442796!10181-103D1;0.622785!10159-103A6;0.542563!10056-101H2;0.625931!10737-110B8;0.445415!10025-101D7;0.978498!10044-101F8;0.862993!10424-106D1;0.884353!10463-106H4;0.255542!10616-108G4;0.186736!10486-107A9;0.00892426!10062-101H8;0.015533!10202-103F4;0.6553!10158-103A5;0.604986!10441-106E9;0.74476!10031-101E4;0.367132!10063-101H9;0.305097!10063-101H9;0.560884!11763-123H8;0.314401!11765-123I1;0.132249!11768-123I4;0.0767325!10807-111A6;0.169256!10790-110H7;0.0756304!10798-110I6;0.107138!10786-110H3;0.0597843!10591-108D6;0.0482373!10593-108D8;0.0218466!10590-108D5;0.0129835!10026-101D8;0.052925!10096-102C6;0.354465!10168-103B6;0.640086!10154-103A1;0.497105!10209-103G2;0.618074!10061-101H7;0.384366!10027-101D9;0.470922!10043-101F7;0.234894!10783-110G9;0.354114!10028-101E1;0.856224!10060-101H6;0.411981!10203-103F5;0.590826!10059-101H5;0.261973!10047-101G2;0.168342!10029-101E2;0.934111!10058-101H4;0.637631!10418-106C4;0.424643!10492-107B6;0.167229!10694-109G1;0.683553!10797-110I5;0.203372!10057-101H3;0.112649!10100-102D1;0.21343!10055-101H1;0.419092!10204-103F6;0.539508!10191-103E2;0.778297!10563-108A5;0.280075
|name=5-CCGGATTTA,CNhs13826,BestGuess:ELK4_f1_HM09(0.684350736035022),T:1354.0(64.66%),B:23785.4(51.36%),P:1e-34
|name=5-CCGGATTTA,CNhs13826,BestGuess:ELK4_f1_HM09(0.684350736035022),T:1354.0(64.66%),B:23785.4(51.36%),P:1e-34
|tomtom_result=YDR520C#MA0422.1;0;0.000138165;0.0657666;0.117918;9;CCGGATTTA;CCGGAGATAA;+!LYS14#MA0325.1;0;0.000352766;0.167917;0.117918;8;CCGGATTTA;CCGGAATT;+!HAP1#MA0312.1;-1;0.000374852;0.17843;0.117918;8;CCGGATTTA;CGGAGATA;+!ASG1#MA0275.1;0;0.000573272;0.272877;0.135252;6;CCGGATTTA;CCGGAA;+!YLR278C#MA0430.1;0;0.000757914;0.360767;0.143052;8;CCGGATTTA;CCGGAGTT;+!YRR1#MA0439.1;0;0.000993466;0.47289;0.147492;9;CCGGATTTA;GCGGAGATAAG;-!STB5#MA0392.1;-1;0.00109402;0.520753;0.147492;8;CCGGATTTA;CGGTGTTA;+!OAF1#MA0348.1;0;0.00141542;0.673739;0.16697;9;CCGGATTTA;TCGGAGATA;+!CAT8#MA0280.1;0;0.00159851;0.76089;0.167616;6;CCGGATTTA;CCGGAA;+!RGT1#MA0367.1;0;0.00257417;1.22531;0.242929;9;CCGGATTTA;CCGGAAAAACT;-!YJL103C#MA0427.1;3;0.00383792;1.82685;0.329265;8;CCGGATTTA;TCTCCGGAGCT;-!ECM22#MA0292.1;1;0.00457707;2.17869;0.338897;6;CCGGATTTA;TCCGGAG;-!GSM1#MA0308.1;6;0.00476645;2.26883;0.338897;9;CCGGATTTA;TATACTCCGGAGTTTTTTAAT;-!Tcfcp2l1#MA0145.1;0;0.00663124;3.15647;0.417202;9;CCGGATTTA;CTGGTTTGAACTGG;-!YPR015C#MA0435.1;3;0.00776725;3.69721;0.458131;9;CCGGATTTA;TGTAAGGATTTACGTCTTCA;-!ELF5#MA0136.1;0;0.0117218;5.5796;0.608014;9;CCGGATTTA;AAGGAAGTA;-!TBP#MA0108.2;3;0.0126594;6.02589;0.608014;9;CCGGATTTA;CCCCGCCTTTTATAC;-!TBP#MA0108.2;3;0.0126594;6.02589;0.608014;9;CCGGATTTA;CCCCGCCTTTTATAC;-!REL#MA0101.1;0;0.0128855;6.1335;0.608014;9;CCGGATTTA;GGGGATTTCC;+!YER184C#MA0424.1;2;0.0144799;6.89245;0.638497;6;CCGGATTTA;TTCCGGAG;-!Ptx1#MA0201.1;-2;0.0150995;7.18738;0.638497;7;CCGGATTTA;GGATTAA;-!SMP1#MA0383.1;1;0.0155613;7.40716;0.638497;9;CCGGATTTA;TGCTAATTTAATTATAGGTAA;-!ELK4#MA0076.1;1;0.0163631;7.78886;0.643425;8;CCGGATTTA;ACCGGAAGT;+!SIP4#MA0380.1;1;0.0173454;8.25639;0.654766;6;CCGGATTTA;TCCGGAG;-!YRM1#MA0438.1;0;0.0204458;9.73221;0.737119;8;CCGGATTTA;ACGGAAAT;+
}}
}}

Latest revision as of 13:13, 7 September 2012

Full Name: 5-CCGGATTTA,CNhs13826,BestGuess:ELK4_f1_HM09(0.684350736035022),T:1354.0(64.66%),B:23785.4(51.36%),P:1e-34

Motif matrix
POACGT
1125.922740.638251.844235.596
28.124900.41270.8174.666
32.708123.2141136.00692.072
4127.27697.4881004.668124.568
5824.586101.55223.41204.454
6270.894.78170.604817.816
7239.65860.93136.754916.658
862.284136.754163.834991.128
9794.798129.984219.348209.87

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation

YDR520C#MA0422.100.0001381650.06576660.1179189CCGGATTTACCGGAGATAA+
LYS14#MA0325.100.0003527660.1679170.1179188CCGGATTTACCGGAATT+
HAP1#MA0312.1-10.0003748520.178430.1179188CCGGATTTACGGAGATA+
ASG1#MA0275.100.0005732720.2728770.1352526CCGGATTTACCGGAA+
YLR278C#MA0430.100.0007579140.3607670.1430528CCGGATTTACCGGAGTT+
YRR1#MA0439.100.0009934660.472890.1474929CCGGATTTAGCGGAGATAAG-
STB5#MA0392.1-10.001094020.5207530.1474928CCGGATTTACGGTGTTA+
OAF1#MA0348.100.001415420.6737390.166979CCGGATTTATCGGAGATA+
CAT8#MA0280.100.001598510.760890.1676166CCGGATTTACCGGAA+
RGT1#MA0367.100.002574171.225310.2429299CCGGATTTACCGGAAAAACT-
YJL103C#MA0427.130.003837921.826850.3292658CCGGATTTATCTCCGGAGCT-
ECM22#MA0292.110.004577072.178690.3388976CCGGATTTATCCGGAG-
GSM1#MA0308.160.004766452.268830.3388979CCGGATTTATATACTCCGGAGTTTTTTAAT-
Tcfcp2l1#MA0145.100.006631243.156470.4172029CCGGATTTACTGGTTTGAACTGG-
YPR015C#MA0435.130.007767253.697210.4581319CCGGATTTATGTAAGGATTTACGTCTTCA-
ELF5#MA0136.100.01172185.57960.6080149CCGGATTTAAAGGAAGTA-
TBP#MA0108.230.01265946.025890.6080149CCGGATTTACCCCGCCTTTTATAC-
TBP#MA0108.230.01265946.025890.6080149CCGGATTTACCCCGCCTTTTATAC-
REL#MA0101.100.01288556.13350.6080149CCGGATTTAGGGGATTTCC+
YER184C#MA0424.120.01447996.892450.6384976CCGGATTTATTCCGGAG-
Ptx1#MA0201.1-20.01509957.187380.6384977CCGGATTTAGGATTAA-
SMP1#MA0383.110.01556137.407160.6384979CCGGATTTATGCTAATTTAATTATAGGTAA-
ELK4#MA0076.110.01636317.788860.6434258CCGGATTTAACCGGAAGT+
SIP4#MA0380.110.01734548.256390.6547666CCGGATTTATCCGGAG-
YRM1#MA0438.100.02044589.732210.7371198CCGGATTTAACGGAAAT+