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MacroAPE 1083:PAX6 f1: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;4.167770683269204;25.835830463249398;6.152423389587883;128.84397546389343!2;8.893458232028156;88.93252909740376;62.80556260894657;4.36845006...")
 
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;0.968663!10493-107B7;0.805934!10494-107B8;0.236154!10850-111F4;0.710745!10851-111F5;0.958034!10852-111F6;0.668732!10853-111F7;0.159125!10854-111F8;0.960261!10855-111F9;0.562777!10856-111G1;0.821825!10847-111F1;0.804412!10846-111E9;0.482376!10848-111F2;0.910402!10845-111E8;0.53432!10857-111G2;0.858102!10858-111G3;0.623674!10156-103A3;0.860471!11901-125F2;0.919911!11902-125F3;0.731088!11903-125F4;0.551696!10689-109F5;0.569496!10648-109A9;0.560088!10784-110H1;0.670759!10744-110C6;0.326626!10772-110F7;0.0551666!10474-106I6;0.667889!10600-108E6;0.926273!10684-109E9;0.855774!12226-129F3;0.327879!12227-129F4;0.0811589!10508-107D4;0.13144!10539-107G8;0.595552!10607-108F4;0.695277!10555-107I6;0.850085!10774-110F9;0.947512!10637-108I7;0.825522!10663-109C6;0.825244!10728-110A8;0.244556!10729-110A9;0.80565!10430-106D7;0.553089!10730-110B1;0.351605!10813-111B3;0.708874!10812-111B2;0.389264!10037-101F1;0.0866406!10172-103C1;0.876654!10163-103B1;0.652418!10076-102A4;0.944846!10073-102A1;0.664893!10036-101E9;0.798702!10195-103E6;0.772932!10277-104E7;0.773329!10434-106E2;0.567318!10550-107I1;0.494739!10545-107H5;0.65693!10544-107H4;0.293822!10704-109H2;0.620379!10510-107D6;0.543488!10558-107I9;0.823476!10020-101D2;0.303617!10732-110B3;0.331778!10049-101G4;0.468279!10698-109G5;0.837959!10437-106E5;0.438011!10417-106C3;0.961699!10035-101E8;0.178537!10171-103B9;0.879926!10157-103A4;0.782646!10034-101E7;0.892613!10072-101I9;0.893379!10199-103F1;0.993418!10200-103F2;0.0925704!10697-109G4;0.428346!10723-110A3;0.868316!10179-103C8;0.4145!10160-103A7;0.683404!10180-103C9;0.362152!10162-103A9;0.862102!10021-101D3;0.412478!10840-111E3;0.543075!10706-109H4;0.180671!10033-101E6;0.464212!10032-101E5;0.796348!10490-107B4;0.79419!10439-106E7;0.909397!10022-101D4;0.496743!10176-103C5;0.627193!10469-106I1;0.824336!10067-101I4;0.751241!10411-106B6;0.995191!10471-106I3;0.532165!10030-101E3;0.591631!10475-106I7;0.498084!10787-110H4;0.704048!10477-106I9;0.818119!10695-109G2;0.852486!11771-123I7;0.672398!11772-123I8;0.229199!11773-123I9;0.121242!10093-102C3;0.191785!10442-106F1;0.0580077!10442-106F1;0.300206!10201-103F3;0.464192!10639-108I9;0.950258!11843-124H7;0.437645!11841-124H5;0.797545!10693-109F9;0.977937!10436-106E4;0.933576!10483-107A6;0.226482!10282-104F3;0.718985!10023-101D5;0.66265!10066-101I3;0.647177!10065-101I2;0.487025!10800-110I8;0.153867!10610-108F7;0.852599!10841-111E4;0.631769!10541-107H1;0.945238!10842-111E5;0.792315!10562-108A4;0.715693!10024-101D6;0.971396!10064-101I1;0.351591!10609-108F6;0.649099!10048-101G3;0.804771!10781-110G7;0.439422!10181-103D1;0.788546!10159-103A6;0.873713!10056-101H2;0.680238!10737-110B8;0.961959!10025-101D7;0.519479!10044-101F8;0.809162!10424-106D1;0.630831!10463-106H4;0.633046!10616-108G4;0.549595!10486-107A9;0.369394!10062-101H8;0.342594!10202-103F4;0.500142!10158-103A5;0.0553583!10441-106E9;0.35673!10031-101E4;0.659611!10063-101H9;0.821923!10063-101H9;0.808105!11763-123H8;0.618595!11765-123I1;0.602329!11768-123I4;0.709853!10807-111A6;0.399589!10790-110H7;0.700736!10798-110I6;0.545317!10786-110H3;0.626045!10591-108D6;0.966964!10593-108D8;0.770722!10590-108D5;0.620434!10026-101D8;0.823029!10096-102C6;0.670257!10168-103B6;0.651071!10154-103A1;0.935895!10209-103G2;0.944419!10061-101H7;0.215583!10027-101D9;0.0901314!10043-101F7;0.919029!10783-110G9;0.490828!10028-101E1;0.356279!10060-101H6;0.0692763!10203-103F5;0.0581397!10059-101H5;0.281492!10047-101G2;0.17852!10029-101E2;0.320844!10058-101H4;0.169866!10418-106C4;0.151274!10492-107B6;0.423331!10694-109G1;0.809983!10797-110I5;0.646487!10057-101H3;0.233117!10100-102D1;0.090671!10055-101H1;0.975293!10204-103F6;0.983319!10191-103E2;0.606521!10563-108A5;0.50465
|name=PAX6_f1
|name=PAX6_f1
|tomtom_result=Pax6#MA0069.1;3;5.84182e-16;2.7807e-13;5.56141e-13;11;TCAAGCGTGAA;AACTCATGCGTGAA;-!Pax5#MA0014.1;7;0.00020636;0.0982272;0.0982272;11;TCAAGCGTGAA;GGAGCACTGAAGCGTAACCG;+!FOXF2#MA0030.1;-1;0.00535661;2.54975;1;10;TCAAGCGTGAA;CAAACGTAAACAAT;+!YPR015C#MA0435.1;1;0.00789678;3.75887;1;11;TCAAGCGTGAA;TGAAGACGTAAATCCTTACA;+!Arnt::Ahr#MA0006.1;-3;0.0081142;3.86236;1;6;TCAAGCGTGAA;TGCGTG;+!FKH1#MA0296.1;0;0.00950184;4.52288;1;11;TCAAGCGTGAA;TGAATTGTAAACAAAGAGGA;+!Pax2#MA0067.1;-4;0.0119027;5.66567;1;7;TCAAGCGTGAA;GCGTGACT;-!STB3#MA0390.1;-1;0.0193104;9.19174;1;10;TCAAGCGTGAA;CCAGAGTGAAAAATTTTGGAC;-!SOK2#MA0385.1;0;0.0210022;9.99706;1;11;TCAAGCGTGAA;ACCTGCAGGCA;+
}}
}}

Latest revision as of 13:15, 7 September 2012

Full Name: PAX6_f1

Motif matrix
POACGT
14.16777068326920425.8358304632493986.152423389587883128.84397546389343
28.89345823202815688.9325290974037662.805562608946574.368450061621585
3151.001556097291680.012.648880062411451.3495638402966967
474.3541076944220510.1040963828825416.08011513662225864.46168078607312
55.26154377946498435.935498630690894123.009096507316630.7938610825274696
610.600259559462211124.585828576190377.70266660823695222.11124525611045
729.68605671350774.445622062153828130.868321224338560.0
84.564701224532953.453295708994488722.907320446358426134.074682620114
960.7613703214384340.635088866021974792.5423829151831811.061157897356502
10146.12373865518892.77851378884613586.9859775262417199.111770029723202
11119.9505172318653822.296506322840759.98723132822391912.765745117070072

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
Pax6#MA0069.135.84182e-162.7807e-135.56141e-1311TCAAGCGTGAAAACTCATGCGTGAA-
Pax5#MA0014.170.000206360.09822720.098227211TCAAGCGTGAAGGAGCACTGAAGCGTAACCG+
FOXF2#MA0030.1-10.005356612.54975110TCAAGCGTGAACAAACGTAAACAAT+
YPR015C#MA0435.110.007896783.75887111TCAAGCGTGAATGAAGACGTAAATCCTTACA+
Arnt::Ahr#MA0006.1-30.00811423.8623616TCAAGCGTGAATGCGTG+
FKH1#MA0296.100.009501844.52288111TCAAGCGTGAATGAATTGTAAACAAAGAGGA+
Pax2#MA0067.1-40.01190275.6656717TCAAGCGTGAAGCGTGACT-
STB3#MA0390.1-10.01931049.19174110TCAAGCGTGAACCAGAGTGAAAAATTTTGGAC-
SOK2#MA0385.100.02100229.99706111TCAAGCGTGAAACCTGCAGGCA+
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