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MacroAPE 1083:4-AAAACGCGC: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;645.43;47.386;74.347;49.837!2;730.398;42.484;30.229;13.889!3;666.672;67.811;42.484;40.033!4;562.913;65.36;150.328;38.399!5;79.249;586.606;11...")
 
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80-129A2;0.0683199!12181-129A3;0.0167082!12176-128I7;0.0928715!12177-128I8;0.170471!12182-129A4;0.0516055!12183-129A5;0.10625!12184-129A6;0.0258555!10809-111A8;0.144892!10597-108E3;0.0124408!10717-109I6;0.0526818!10455-106G5;0.0487989!10534-107G3;0.00496548!10429-106D6;9.7596e-06!10464-106H5;0.000103098!10827-111C8;0.000219963!10789-110H6;0.104932!10828-111C9;0.0690585!10788-110H5;0.263414!10792-110H9;0.11687!10765-110E9;0.127348!10829-111D1;0.0891225!10830-111D2;0.00228296!10831-111D3;0.0307838!10832-111D4;0.0187233!10833-111D5;0.0175125!10764-110E8;0.0205401!10770-110F5;0.0275387!10399-106A3;0.0139457!10400-106A4;0.00566022!10405-106A9;0.0259649!10834-111D6;0.00724096!10835-111D7;0.0273327!10836-111D8;0.0026504!10837-111D9;0.00960029!10699-109G6;0.00455334!10802-111A1;0.000779254!10796-110I4;0.0568296!10010-101C1;0.00946835!10810-111A9;0.0256881!10421-106C7;0.000477296!10708-109H6;0.0559093!12235-129G3;0.00155825!12236-129G4;0.404326!12237-129G5;0.000531635!10167-103B5;0.319667!10151-102I7;0.530528!10428-106D5;0.55908!10795-110I3;0.202168!10805-111A4;0.0202271!10052-101G7;0.0200191!10189-103D9;0.105646!10589-108D4;0.919846!10425-106D2;0.0523225!10427-106D4;0.0217953!10702-109G9;0.00431797!10432-106D9;0.000569914!10496-107C1;0.00149702!10718-109I7;0.134042!10011-101C2;0.0884181!10053-101G8;0.108435!10686-109F2;0.657016!10084-102B3;0.0374111!10012-101C3;0.29659!10085-102B4;0.285985!10482-107A5;0.785492!10419-106C5;0.000846861!10080-102A8;0.0189032!10760-110E4;0.412864!10709-109H7;0.00198974!10710-109H8;0.00334382!10703-109H1;0.00271118!10719-109I8;7.71134e-07!10642-109A3;1.47628e-05!10177-103C6;1.02934e-05!10164-103B2;0.454319!10173-103C2;0.345173!10166-103B4;0.992461!10083-102B2;0.963801!10188-103D8;0.766306!10552-107I3;0.469013!10553-107I4;0.0205288!10013-101C4;0.0419496!10536-107G5;0.0802446!10618-108G6;0.289521!10423-106C9;0.00956733!10785-110H2;0.0010061!12238-129G6;0.00553008!12239-129G7;0.28623!12240-129G8;0.569293!10416-106C2;0.0276357!10801-110I9;0.000743195!10766-110F1;0.0256223!10824-111C5;0.0215634!10825-111C6;0.0308805!10826-111C7;0.0173759!10454-106G4;0.0191216!10409-106B4;0.0250499!10638-108I8;0.00617321!10636-108I6;0.00271688!10513-107D9;0.000224123!10420-106C6;0.000219543!10082-102B1;0.000359975!10014-101C5;0.589631!10070-101I7;0.130035!10452-106G2;0.797287!10453-106G3;0.00264094!10449-106F8;0.000343755!10042-101F6;0.000220805!10069-101I6;0.316679!10193-103E4;0.0509836!10631-108I1;0.278296!10438-106E6;4.85486e-05!10488-107B2;0.000102247!10196-103E7;0.271709!10071-101I8;0.0377695!10071-101I8;0.80722!10041-101F5;0.822752!10451-106G1;0.192422!10450-106F9;0.000117153!10604-108F1;2.79618e-05!10605-108F2;0.000477648!10606-108F3;0.0708106!10603-108E9;0.00099433!10497-107C2;0.00332619!10448-106F7;0.0460602!10643-109A4;0.0138055!10426-106D3;0.0961772!10431-106D8;0.0146582!10197-103E8;0.00942697!10443-106F2;0.0306806!10815-111B5;0.844558!10816-111B6;0.00157997!10817-111B7;0.000422993!10015-101C6;0.00165323!10410-106B5;0.130125!10054-101G9;0.42527!10758-110E2;0.216162!10711-109H9;0.0311147!10040-101F4;0.0121674!10470-106I2;0.323517!10415-106C1;2.20096e-05!10198-103E9;0.866327!10614-108G2;0.115094!10612-108F9;0.672676!10549-107H9;0.0036424!10615-108G3;0.0087004!10487-107B1;0.00149337!10433-106E1;0.045759!10688-109F4;0.428127!10444-106F3;0.000848032!10444-106F3;0.139127!10485-107A8;0.148529!10413-106B8;0.132245!10175-103C4;0.157492!10161-103A8;0.436584!12131-128D7;0.500173!10624-108H3;0.071188!10712-109I1;0.639575!10205-103F7;0.000331392!10206-103F8;0.0311109!10207-103F9;0.00410857!10050-101G5;0.384172!10051-101G6;0.953908!10016-101C7;0.0173436!10046-101G1;0.0672223!10778-110G4;0.247278!10633-108I3;0.00690847!10818-111B8;5.63401e-06!10819-111B9;0.000500702!10820-111C1;0.00146413!10484-107A7;0.000826282!10808-111A7;0.190874!10169-103B7;7.6926e-05!10153-102I9;0.369753!13425-144D5;0.585167!13433-144E4;7.16498e-05!13437-144E8;0.000140733!11904-125F5;0.00045875!11905-125F6;0.176308!10039-101F3;0.480405!10791-110H8;0.374386!10017-101C8;0.182389!10045-101F9;0.217417!10509-107D5;0.775245!10839-111E2;0.772763!10692-109F8;0.283717!10079-102A7;0.00257492!10078-102A6;0.0485223!10721-110A1;0.0356815!10569-108B2;0.0220933!10570-108B3;5.86701e-06!10571-108B4;1.30716e-06!10647-109A8;0.0435635!10752-110D5;0.0143997!10782-110G8;0.0373399!10726-110A6;0.0122243!10018-101C9;0.241373!10086-102B5;0.0196834!10182-103D2;0.660668!10165-103B3;0.406496!10499-107C4;0.477591!10408-106B3;0.132246!10019-101D1;0.04935!10068-101I5;0.283442!10075-102A3;0.380393!10077-102A5;0.208577!10727-110A7;0.326944!10775-110G1;0.0278957!10412-106B7;0.00603656!12231-129F8;0.105674!12232-129F9;0.0387909!12233-129G1;0.0289822!12234-129G2;0.0283927!10414-106B9;0.0128177!10170-103B8;0.0247585!10183-103D3;0.510412!10150-102I6;0.434588!10174-103C3;0.474532!10155-103A2;0.300085!10038-101F2;0.390208!10838-111E1;0.219255!10759-110E3;7.76372e-06!10514-107E1;0.000518924!10465-106H6;0.00433063!10691-109F7;0.111706!10843-111E6;0.616721!10844-111E7;8.83102e-06!11747-123G1;4.17304e-08!11748-123G2;0.716189!11749-123G3;0.100883!11750-123G4;0.208097!11751-123G5;0.00389165!11840-124H4;0.00168555!11752-123G6;0.00441113!11753-123G7;3.61789e-08!11754-123G8;0.00998765!11755-123G9;0.242645!11756-123H1;0.548649!11833-124G6;0.297224!11760-123H5;0.000933272!11836-124G9;0.373145!11758-123H3;0.400518!11835-124G8;0.0169805!11762-123H7;0.00875857!11838-124H2;0.00126464!11757-123H2;2.42159e-05!11759-123H4;0.562671!11761-123H6;0.114863!11842-124H6;0.00180368!11837-124H1;0.0247832!10568-108B1;0.0282503!13230-141I8;0.598068!13231-141I9;0.0209663!10696-109G3;0.0271714!10493-107B7;0.464446!10494-107B8;0.408227!10850-111F4;0.0348689!10851-111F5;0.0616356!10852-111F6;0.346487!10853-111F7;0.0307428!10854-111F8;0.394697!10855-111F9;0.734116!10856-111G1;0.449962!10847-111F1;0.960909!10846-111E9;0.0300368!10848-111F2;0.10495!10845-111E8;0.603539!10857-111G2;0.00149594!10858-111G3;0.0141374!10156-103A3;0.519712!11901-125F2;0.550257!11902-125F3;0.747041!11903-125F4;0.875343!10689-109F5;0.868961!10648-109A9;0.146355!10784-110H1;0.011044!10744-110C6;0.0362232!10772-110F7;0.0381282!10474-106I6;0.0234334!10600-108E6;0.978215!10684-109E9;0.00867224!12226-129F3;0.00187693!12227-129F4;0.341957!10508-107D4;0.600136!10539-107G8;0.0100034!10607-108F4;0.00359553!10555-107I6;0.000571154!10774-110F9;0.000449899!10637-108I7;1.78632e-06!10663-109C6;0.00482454!10728-110A8;2.78347e-11!10729-110A9;1.59065e-05!10430-106D7;0.146929!10730-110B1;0.000282447!10813-111B3;0.0893924!10812-111B2;0.0959796!10037-101F1;0.0972563!10172-103C1;0.289303!10163-103B1;0.590381!10076-102A4;0.510713!10073-102A1;0.346542!10036-101E9;0.752598!10195-103E6;0.290232!10277-104E7;0.427464!10434-106E2;0.823586!10550-107I1;0.172307!10545-107H5;0.000687678!10544-107H4;0.0220157!10704-109H2;0.00218998!10510-107D6;0.00278022!10558-107I9;1.89724e-07!10020-101D2;0.133469!10732-110B3;0.170555!10049-101G4;0.424961!10698-109G5;0.0058824!10437-106E5;0.00204565!10417-106C3;0.0879129!10035-101E8;0.0833418!10171-103B9;0.310494!10157-103A4;0.539416!10034-101E7;0.47881!10072-101I9;0.308625!10199-103F1;0.456991!10200-103F2;0.00197007!10697-109G4;0.0188771!10723-110A3;0.0174867!10179-103C8;0.0280666!10160-103A7;0.365902!10180-103C9;0.297065!10162-103A9;0.436417!10021-101D3;0.567629!10840-111E3;0.951824!10706-109H4;0.00409239!10033-101E6;0.511509!10032-101E5;0.219432!10490-107B4;0.286188!10439-106E7;0.0111133!10022-101D4;0.0301168!10176-103C5;0.0534378!10469-106I1;0.32855!10067-101I4;5.33911e-05!10411-106B6;0.760687!10471-106I3;0.0253334!10030-101E3;0.551811!10475-106I7;0.361337!10787-110H4;4.26822e-05!10477-106I9;0.013757!10695-109G2;7.04713e-06!11771-123I7;0.176194!11772-123I8;0.633298!11773-123I9;0.46263!10093-102C3;0.329383!10442-106F1;0.00109021!10442-106F1;0.497713!10201-103F3;0.56465!10639-108I9;0.0470718!11843-124H7;0.000330441!11841-124H5;0.188296!10693-109F9;0.00485427!10436-106E4;0.0127944!10483-107A6;0.0109653!10282-104F3;0.000631178!10023-101D5;0.129412!10066-101I3;0.0652928!10065-101I2;0.124744!10800-110I8;0.163235!10610-108F7;4.92954e-07!10841-111E4;0.0197371!10541-107H1;0.0184964!10842-111E5;0.00230382!10562-108A4;0.00113937!10024-101D6;5.08338e-05!10064-101I1;0.104648!10609-108F6;0.989589!10048-101G3;0.120401!10781-110G7;0.0369976!10181-103D1;0.122553!10159-103A6;0.472641!10056-101H2;0.487732!10737-110B8;0.566354!10025-101D7;0.791564!10044-101F8;0.719435!10424-106D1;0.789775!10463-106H4;0.0254855!10616-108G4;0.0837803!10486-107A9;0.744763!10062-101H8;0.555294!10202-103F4;0.849972!10158-103A5;0.0150761!10441-106E9;0.294323!10031-101E4;4.80532e-05!10063-101H9;0.346112!10063-101H9;0.561628!11763-123H8;0.214784!11765-123I1;0.173016!11768-123I4;0.00369641!10807-111A6;0.119931!10790-110H7;0.000558636!10798-110I6;0.00155285!10786-110H3;5.5066e-05!10591-108D6;0.00461167!10593-108D8;0.00296522!10590-108D5;0.1171!10026-101D8;0.000193441!10096-102C6;0.349648!10168-103B6;0.216616!10154-103A1;0.438344!10209-103G2;0.377264!10061-101H7;0.0700727!10027-101D9;0.229907!10043-101F7;1.63263e-06!10783-110G9;0.00233758!10028-101E1;0.0124121!10060-101H6;0.0521025!10203-103F5;0.107121!10059-101H5;0.0971199!10047-101G2;0.119925!10029-101E2;0.470172!10058-101H4;0.0872642!10418-106C4;0.100504!10492-107B6;0.0035887!10694-109G1;0.00597491!10797-110I5;0.0335775!10057-101H3;0.896154!10100-102D1;0.142811!10055-101H1;0.0494864!10204-103F6;0.783094!10191-103E2;0.127102!10563-108A5;0.247918
|name=4-AAAACGCGC,CNhs11715,BestGuess:TFDP1.p2.SwissRegulon.nucfreq(0.642529101169757),T:817.0(48.20%),B:14835.1(33.17%),P:1e-36
|name=4-AAAACGCGC,CNhs11715,BestGuess:TFDP1.p2.SwissRegulon.nucfreq(0.642529101169757),T:817.0(48.20%),B:14835.1(33.17%),P:1e-36
|tomtom_result=DAL82#MA0291.1;0;0.000549643;0.26163;0.52326;9;AAAACGCGC;AATGTGCGC;+!TBP#MA0108.2;5;0.00445436;2.12028;1;9;AAAACGCGC;GTATAAAAGGCGGGG;+!TBP#MA0108.2;5;0.00445436;2.12028;1;9;AAAACGCGC;GTATAAAAGGCGGGG;+!MBP1::SWI6#MA0330.1;-2;0.00449564;2.13992;1;7;AAAACGCGC;AACGCGT;-!NDT80#MA0343.1;12;0.00558168;2.65688;1;9;AAAACGCGC;TTTCCGGCCACAAAAACGCAA;+!dl_1#MA0022.1;4;0.00640532;3.04893;1;8;AAAACGCGC;CGGAAAAACCCC;-!DAL81#MA0290.1;0;0.00977039;4.65071;1;9;AAAACGCGC;AAAAGCCGCGGGCGGGATT;+!RSC30#MA0375.1;-2;0.0129553;6.16674;1;7;AAAACGCGC;CGCGCGCG;+!TEA1#MA0405.1;-1;0.0129553;6.16674;1;8;AAAACGCGC;ATGCCCGC;-!MBP1#MA0329.1;-2;0.0135059;6.42883;1;7;AAAACGCGC;TACGCGT;-!RSC3#MA0374.1;-3;0.0145817;6.94089;1;6;AAAACGCGC;CCGCGCG;-
}}
}}

Latest revision as of 13:29, 7 September 2012

Full Name: 4-AAAACGCGC,CNhs11715,BestGuess:TFDP1.p2.SwissRegulon.nucfreq(0.642529101169757),T:817.0(48.20%),B:14835.1(33.17%),P:1e-36

Motif matrix
POACGT
1645.4347.38674.34749.837
2730.39842.48430.22913.889
3666.67267.81142.48440.033
4562.91365.36150.32838.399
579.249586.606111.11240.033
632.68120.099608.66555.556
745.752663.40462.09245.752
860.45852.288668.30635.948
948.203590.691133.17144.935

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
DAL82#MA0291.100.0005496430.261630.523269AAAACGCGCAATGTGCGC+
TBP#MA0108.250.004454362.1202819AAAACGCGCGTATAAAAGGCGGGG+
TBP#MA0108.250.004454362.1202819AAAACGCGCGTATAAAAGGCGGGG+
MBP1::SWI6#MA0330.1-20.004495642.1399217AAAACGCGCAACGCGT-
NDT80#MA0343.1120.005581682.6568819AAAACGCGCTTTCCGGCCACAAAAACGCAA+
dl_1#MA0022.140.006405323.0489318AAAACGCGCCGGAAAAACCCC-
DAL81#MA0290.100.009770394.6507119AAAACGCGCAAAAGCCGCGGGCGGGATT+
RSC30#MA0375.1-20.01295536.1667417AAAACGCGCCGCGCGCG+
TEA1#MA0405.1-10.01295536.1667418AAAACGCGCATGCCCGC-
MBP1#MA0329.1-20.01350596.4288317AAAACGCGCTACGCGT-
RSC3#MA0374.1-30.01458176.9408916AAAACGCGCCCGCGCG-
Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MacroAPE_1083:4-AAAACGCGC&oldid=2134020"