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MacroAPE 1083:5-CGTCACTMGT: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;74.88;377.52;148.98;179.4!2;25.74;1.56;719.16;33.54!3;0.78;14.04;17.16;748.02!4;45.24;546.0;164.58;24.18!5;685.62;2.34;45.24;46.8!6;26.52;48...")
 
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-05!11368-117I9;0.018515!11440-118H9;0.202982!11532-120A2;0.0782235!11693-123A1;0.0347121!11292-117A5;0.000525489!11369-118A1;0.0467874!11441-118I1;0.0215386!10007-101B4;0.0619811!11520-119H8;0.832715!11600-120H7;0.00519584!11681-122H7;0.0167327!11216-116B1;0.0337844!12179-129A1;0.00510653!12180-129A2;0.0339245!12181-129A3;0.014941!12176-128I7;0.0582794!12177-128I8;0.0282742!12182-129A4;0.0348215!12183-129A5;0.027582!12184-129A6;0.00547788!10809-111A8;0.0324867!10597-108E3;0.239462!10717-109I6;0.96749!10455-106G5;0.479844!10534-107G3;0.552776!10429-106D6;0.897715!10464-106H5;0.982494!10827-111C8;0.968175!10789-110H6;0.70254!10828-111C9;0.832137!10788-110H5;0.620831!10792-110H9;0.327575!10765-110E9;0.744901!10829-111D1;0.710657!10830-111D2;0.842159!10831-111D3;0.888952!10832-111D4;0.753291!10833-111D5;0.87011!10764-110E8;0.819579!10770-110F5;0.7001!10399-106A3;0.804514!10400-106A4;0.785941!10405-106A9;0.90153!10834-111D6;0.847312!10835-111D7;0.926533!10836-111D8;0.641522!10837-111D9;0.943229!10699-109G6;0.544361!10802-111A1;0.870504!10796-110I4;0.469457!10010-101C1;0.834163!10810-111A9;0.626755!10421-106C7;0.489528!10708-109H6;0.984772!12235-129G3;0.370592!12236-129G4;0.565355!12237-129G5;0.0336712!10167-103B5;0.350855!10151-102I7;0.318469!10428-106D5;0.387267!10795-110I3;0.552846!10805-111A4;0.302392!10052-101G7;0.836252!10189-103D9;0.953381!10589-108D4;0.524627!10425-106D2;0.0483634!10427-106D4;0.735952!10702-109G9;0.0132148!10432-106D9;0.368332!10496-107C1;0.230783!10718-109I7;0.670731!10011-101C2;0.469301!10053-101G8;0.596424!10686-109F2;0.0147083!10084-102B3;0.110849!10012-101C3;0.479019!10085-102B4;0.499498!10482-107A5;0.808094!10419-106C5;0.446279!10080-102A8;0.631297!10760-110E4;0.607246!10709-109H7;0.320199!10710-109H8;0.370469!10703-109H1;0.495866!10719-109I8;0.31007!10642-109A3;0.341073!10177-103C6;0.149242!10164-103B2;0.146445!10173-103C2;0.286268!10166-103B4;0.111073!10083-102B2;0.180399!10188-103D8;0.359317!10552-107I3;0.461644!10553-107I4;0.573054!10013-101C4;0.731957!10536-107G5;0.921398!10618-108G6;0.52016!10423-106C9;0.685111!10785-110H2;0.639934!12238-129G6;0.84911!12239-129G7;0.745728!12240-129G8;0.00336547!10416-106C2;0.904066!10801-110I9;0.45798!10766-110F1;0.722697!10824-111C5;0.688848!10825-111C6;0.871692!10826-111C7;0.955229!10454-106G4;0.926942!10409-106B4;0.705139!10638-108I8;0.797688!10636-108I6;0.668473!10513-107D9;0.564876!10420-106C6;0.573967!10082-102B1;0.38021!10014-101C5;0.859139!10070-101I7;0.922414!10452-106G2;0.281012!10453-106G3;0.00834023!10449-106F8;0.135433!10042-101F6;0.184639!10069-101I6;0.441329!10193-103E4;0.622978!10631-108I1;0.387251!10438-106E6;0.903037!10488-107B2;0.593756!10196-103E7;0.585197!10071-101I8;0.565566!10071-101I8;0.846041!10041-101F5;0.692682!10451-106G1;0.665873!10450-106F9;0.126786!10604-108F1;0.831412!10605-108F2;0.967366!10606-108F3;0.582926!10603-108E9;0.864927!10497-107C2;0.996209!10448-106F7;0.8683!10643-109A4;0.194837!10426-106D3;0.560696!10431-106D8;0.749456!10197-103E8;0.662911!10443-106F2;0.814059!10815-111B5;0.306893!10816-111B6;0.890953!10817-111B7;0.628716!10015-101C6;0.872617!10410-106B5;0.672287!10054-101G9;0.582168!10758-110E2;0.863984!10711-109H9;0.0358408!10040-101F4;0.183463!10470-106I2;0.416998!10415-106C1;0.477234!10198-103E9;0.181618!10614-108G2;0.842476!10612-108F9;0.611316!10549-107H9;0.848719!10615-108G3;0.697715!10487-107B1;0.00217555!10433-106E1;0.384718!10688-109F4;0.955855!10444-106F3;0.785466!10444-106F3;0.0418643!10485-107A8;0.0355096!10413-106B8;0.0811313!10175-103C4;0.816196!10161-103A8;0.174526!12131-128D7;0.226262!10624-108H3;0.0727872!10712-109I1;0.521789!10205-103F7;0.0134254!10206-103F8;0.392509!10207-103F9;0.795874!10050-101G5;0.142573!10051-101G6;0.851761!10016-101C7;0.527044!10046-101G1;0.356187!10778-110G4;0.385917!10633-108I3;0.275162!10818-111B8;0.668629!10819-111B9;0.961158!10820-111C1;0.921503!10484-107A7;0.998084!10808-111A7;0.206849!10169-103B7;0.872564!10153-102I9;0.277986!13425-144D5;0.455879!13433-144E4;0.676183!13437-144E8;0.706693!11904-125F5;0.756624!11905-125F6;2.39138e-05!10039-101F3;0.00147248!10791-110H8;0.447119!10017-101C8;0.521596!10045-101F9;0.980813!10509-107D5;0.86736!10839-111E2;0.467492!10692-109F8;0.0992452!10079-102A7;0.841517!10078-102A6;0.482318!10721-110A1;0.632471!10569-108B2;0.580659!10570-108B3;0.1256!10571-108B4;0.0129523!10647-109A8;0.0556278!10752-110D5;0.283798!10782-110G8;0.998611!10726-110A6;0.0393578!10018-101C9;0.169529!10086-102B5;0.422461!10182-103D2;0.820238!10165-103B3;0.286294!10499-107C4;0.267086!10408-106B3;0.366964!10019-101D1;0.0635621!10068-101I5;0.594897!10075-102A3;0.439991!10077-102A5;0.475088!10727-110A7;0.775751!10775-110G1;0.73659!10412-106B7;0.886011!12231-129F8;0.657534!12232-129F9;0.0201059!12233-129G1;0.00978262!12234-129G2;0.0326845!10414-106B9;0.0137917!10170-103B8;0.397781!10183-103D3;0.383977!10150-102I6;0.367496!10174-103C3;0.29795!10155-103A2;0.393496!10038-101F2;0.372448!10838-111E1;0.457545!10759-110E3;0.412769!10514-107E1;0.0937898!10465-106H6;0.064861!10691-109F7;0.183182!10843-111E6;0.190917!10844-111E7;0.411038!11747-123G1;0.47307!11748-123G2;0.00270708!11749-123G3;0.314668!11750-123G4;0.115996!11751-123G5;0.660347!11840-124H4;0.440164!11752-123G6;0.350562!11753-123G7;0.482127!11754-123G8;0.223092!11755-123G9;0.0128068!11756-123H1;0.000484057!11833-124G6;0.000632894!11760-123H5;0.789066!11836-124G9;0.000110466!11758-123H3;0.0203157!11835-124G8;0.00171192!11762-123H7;0.132677!11838-124H2;0.0945021!11757-123H2;0.00782225!11759-123H4;6.11558e-06!11761-123H6;0.112814!11842-124H6;0.0237622!11837-124H1;0.158023!10568-108B1;0.0907894!13230-141I8;0.0944323!13231-141I9;0.0901309!10696-109G3;0.11381!10493-107B7;0.521984!10494-107B8;0.443415!10850-111F4;0.138806!10851-111F5;0.392572!10852-111F6;0.00103986!10853-111F7;0.000656622!10854-111F8;0.186678!10855-111F9;0.0278792!10856-111G1;0.00362822!10847-111F1;0.00554501!10846-111E9;0.0349639!10848-111F2;0.0048046!10845-111E8;0.00251001!10857-111G2;0.651823!10858-111G3;0.316909!10156-103A3;0.0909978!11901-125F2;0.33043!11902-125F3;0.0289703!11903-125F4;0.0358638!10689-109F5;0.119069!10648-109A9;0.976686!10784-110H1;0.424738!10744-110C6;0.566889!10772-110F7;0.0509863!10474-106I6;0.733082!10600-108E6;0.74709!10684-109E9;0.226895!12226-129F3;0.250394!12227-129F4;0.848591!10508-107D4;0.499171!10539-107G8;0.723008!10607-108F4;0.552445!10555-107I6;0.820821!10774-110F9;0.316127!10637-108I7;0.307727!10663-109C6;0.829192!10728-110A8;0.652178!10729-110A9;0.743427!10430-106D7;0.0245705!10730-110B1;0.379372!10813-111B3;0.148683!10812-111B2;0.18391!10037-101F1;0.108675!10172-103C1;0.419695!10163-103B1;0.322632!10076-102A4;0.287351!10073-102A1;0.346037!10036-101E9;0.522028!10195-103E6;0.506766!10277-104E7;0.462107!10434-106E2;0.0851463!10550-107I1;0.413266!10545-107H5;0.886385!10544-107H4;0.39816!10704-109H2;0.967813!10510-107D6;0.235242!10558-107I9;0.549341!10020-101D2;0.756101!10732-110B3;0.656075!10049-101G4;0.0428112!10698-109G5;0.793336!10437-106E5;0.573095!10417-106C3;0.52154!10035-101E8;0.731211!10171-103B9;0.440193!10157-103A4;0.286985!10034-101E7;0.322743!10072-101I9;0.414696!10199-103F1;0.53611!10200-103F2;0.879673!10697-109G4;0.835719!10723-110A3;0.0854038!10179-103C8;0.841754!10160-103A7;0.0681657!10180-103C9;0.243205!10162-103A9;0.0135537!10021-101D3;0.0117201!10840-111E3;0.948229!10706-109H4;0.028607!10033-101E6;0.381487!10032-101E5;0.34806!10490-107B4;0.470525!10439-106E7;0.617974!10022-101D4;0.389521!10176-103C5;0.927299!10469-106I1;0.32316!10067-101I4;0.289334!10411-106B6;0.893343!10471-106I3;0.410676!10030-101E3;0.426954!10475-106I7;0.545822!10787-110H4;0.865847!10477-106I9;0.695804!10695-109G2;0.658486!11771-123I7;0.736104!11772-123I8;0.173681!11773-123I9;0.699272!10093-102C3;0.448866!10442-106F1;0.769479!10442-106F1;0.439301!10201-103F3;0.293833!10639-108I9;0.154666!11843-124H7;0.85828!11841-124H5;0.853341!10693-109F9;0.089298!10436-106E4;0.713107!10483-107A6;0.561941!10282-104F3;0.710324!10023-101D5;0.275441!10066-101I3;0.418662!10065-101I2;0.861244!10800-110I8;0.753715!10610-108F7;0.183594!10841-111E4;0.116681!10541-107H1;0.39172!10842-111E5;0.484238!10562-108A4;0.413396!10024-101D6;0.0533395!10064-101I1;0.684804!10609-108F6;0.269897!10048-101G3;0.187455!10781-110G7;0.368892!10181-103D1;0.000339014!10159-103A6;0.26368!10056-101H2;0.203331!10737-110B8;0.872415!10025-101D7;0.0753106!10044-101F8;0.973634!10424-106D1;0.916584!10463-106H4;0.382193!10616-108G4;0.745383!10486-107A9;0.189895!10062-101H8;0.836565!10202-103F4;0.403853!10158-103A5;0.930796!10441-106E9;0.175758!10031-101E4;0.734567!10063-101H9;0.536736!10063-101H9;0.573376!11763-123H8;0.946666!11765-123I1;0.0271925!11768-123I4;0.0231916!10807-111A6;0.0400639!10790-110H7;0.335723!10798-110I6;0.291061!10786-110H3;0.26776!10591-108D6;0.799426!10593-108D8;0.870819!10590-108D5;0.421585!10026-101D8;0.535387!10096-102C6;0.124799!10168-103B6;0.0425556!10154-103A1;0.206454!10209-103G2;0.237315!10061-101H7;0.934715!10027-101D9;0.805756!10043-101F7;0.746619!10783-110G9;0.734346!10028-101E1;0.104674!10060-101H6;0.757746!10203-103F5;0.34473!10059-101H5;0.985936!10047-101G2;0.823469!10029-101E2;0.72066!10058-101H4;0.542657!10418-106C4;0.938921!10492-107B6;0.95051!10694-109G1;0.432562!10797-110I5;0.436988!10057-101H3;0.764962!10100-102D1;0.938722!10055-101H1;0.659446!10204-103F6;0.321592!10191-103E2;0.356106!10563-108A5;0.943414
|name=5-CGTCACTMGT,CNhs13229,BestGuess:PAX2_si_HM09(0.744606635441944),T:780.0(31.77%),B:9602.9(20.73%),P:1e-36
|name=5-CGTCACTMGT,CNhs13229,BestGuess:PAX2_si_HM09(0.744606635441944),T:780.0(31.77%),B:9602.9(20.73%),P:1e-36
|tomtom_result=Pax2#MA0067.1;0;0.00205624;0.978771;0.881119;8;CGTCACTCGT;AGTCACGG;+!CREB1#MA0018.1;2;0.00207786;0.989061;0.881119;10;CGTCACTCGT;GACGTCACCAGG;-!ABF1#MA0265.1;1;0.00277663;1.32168;0.881119;10;CGTCACTCGT;ATATCACTTTATACGA;-!bZIP910#MA0096.1;1;0.00803348;3.82394;1;6;CGTCACTCGT;ACGTCAT;-!NFE2L1::MafG#MA0089.1;-1;0.0131215;6.24582;1;6;CGTCACTCGT;GTCATG;-!CST6#MA0286.1;3;0.0141968;6.75769;1;6;CGTCACTCGT;TTACGTCAT;-!TGA1A#MA0129.1;2;0.0172817;8.2261;1;5;CGTCACTCGT;TACGTCA;+
}}
}}

Latest revision as of 13:37, 7 September 2012

Full Name: 5-CGTCACTMGT,CNhs13229,BestGuess:PAX2_si_HM09(0.744606635441944),T:780.0(31.77%),B:9602.9(20.73%),P:1e-36

Motif matrix
POACGT
174.88377.52148.98179.4
225.741.56719.1633.54
30.7814.0417.16748.02
445.24546.0164.5824.18
5685.622.3445.2446.8
626.52485.16147.42120.9
727.381.964.74606.06
8304.98312.7862.4100.62
929.6425.74588.12136.5
10170.8288.14108.42412.62

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
Pax2#MA0067.100.002056240.9787710.8811198CGTCACTCGTAGTCACGG+
CREB1#MA0018.120.002077860.9890610.88111910CGTCACTCGTGACGTCACCAGG-
ABF1#MA0265.110.002776631.321680.88111910CGTCACTCGTATATCACTTTATACGA-
bZIP910#MA0096.110.008033483.8239416CGTCACTCGTACGTCAT-
NFE2L1::MafG#MA0089.1-10.01312156.2458216CGTCACTCGTGTCATG-
CST6#MA0286.130.01419686.7576916CGTCACTCGTTTACGTCAT-
TGA1A#MA0129.120.01728178.226115CGTCACTCGTTACGTCA+
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