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MacroAPE 1083:CATTRTGACG,motif6: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;2.742;297.05;105.11;52.098!2;311.217;7.312;0.457;138.014!3;0.457;27.42;0.457;428.666!4;0.457;0.457;0.457;455.629!5;233.07;0.457;219.36;4.113...")
 
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772!12177-128I8;0.279343!12182-129A4;0.296985!12183-129A5;0.289085!12184-129A6;0.162812!10809-111A8;0.211539!10597-108E3;0.734075!10717-109I6;0.0356461!10455-106G5;0.950691!10534-107G3;0.269918!10429-106D6;0.0499533!10464-106H5;0.0621918!10827-111C8;0.343846!10789-110H6;0.135256!10828-111C9;0.0115886!10788-110H5;0.0106183!10792-110H9;0.0249151!10765-110E9;0.000608616!10829-111D1;0.0345162!10830-111D2;0.149115!10831-111D3;0.00160148!10832-111D4;0.00371961!10833-111D5;0.101412!10764-110E8;0.32856!10770-110F5;0.00982292!10399-106A3;0.00513359!10400-106A4;0.216641!10405-106A9;0.229315!10834-111D6;0.12237!10835-111D7;0.032008!10836-111D8;0.0441414!10837-111D9;0.075506!10699-109G6;0.179401!10802-111A1;0.0136232!10796-110I4;0.0627187!10010-101C1;0.634455!10810-111A9;0.141034!10421-106C7;0.0261347!10708-109H6;0.19812!12235-129G3;0.0439247!12236-129G4;0.79804!12237-129G5;0.196861!10167-103B5;0.963964!10151-102I7;0.619998!10428-106D5;0.4662!10795-110I3;0.892821!10805-111A4;0.230257!10052-101G7;0.00798967!10189-103D9;0.05416!10589-108D4;0.0018978!10425-106D2;0.613393!10427-106D4;0.738881!10702-109G9;0.0215094!10432-106D9;0.00173291!10496-107C1;0.789549!10718-109I7;0.23431!10011-101C2;0.0455536!10053-101G8;0.0158958!10686-109F2;0.092809!10084-102B3;0.105146!10012-101C3;0.547422!10085-102B4;0.533746!10482-107A5;0.854313!10419-106C5;0.675751!10080-102A8;0.248308!10760-110E4;0.517897!10709-109H7;0.932959!10710-109H8;0.96809!10703-109H1;0.645149!10719-109I8;0.856023!10642-109A3;0.598383!10177-103C6;0.866208!10164-103B2;0.723033!10173-103C2;0.489563!10166-103B4;0.695274!10083-102B2;0.97133!10188-103D8;0.983732!10552-107I3;0.543924!10553-107I4;0.0253363!10013-101C4;0.949577!10536-107G5;0.0305842!10618-108G6;0.181313!10423-106C9;0.431419!10785-110H2;0.421401!12238-129G6;0.45697!12239-129G7;0.530682!12240-129G8;0.0142031!10416-106C2;0.547644!10801-110I9;0.732203!10766-110F1;0.108627!10824-111C5;0.394422!10825-111C6;0.344635!10826-111C7;0.326079!10454-106G4;0.453666!10409-106B4;0.146926!10638-108I8;0.0263526!10636-108I6;0.313197!10513-107D9;0.658239!10420-106C6;0.851641!10082-102B1;0.103392!10014-101C5;0.00755745!10070-101I7;0.00281085!10452-106G2;0.039026!10453-106G3;0.109233!10449-106F8;0.289876!10042-101F6;0.46633!10069-101I6;0.95087!10193-103E4;0.0514331!10631-108I1;0.853421!10438-106E6;0.113115!10488-107B2;0.764854!10196-103E7;0.17946!10071-101I8;0.337989!10071-101I8;0.0393312!10041-101F5;0.806573!10451-106G1;0.0145854!10450-106F9;0.582961!10604-108F1;0.89603!10605-108F2;0.0153546!10606-108F3;0.00667396!10603-108E9;0.0212949!10497-107C2;0.00569751!10448-106F7;0.457197!10643-109A4;0.109643!10426-106D3;0.72546!10431-106D8;0.724676!10197-103E8;0.664409!10443-106F2;0.636!10815-111B5;0.888808!10816-111B6;0.280159!10817-111B7;0.11714!10015-101C6;0.208353!10410-106B5;0.000402104!10054-101G9;0.0372547!10758-110E2;0.0280994!10711-109H9;0.717156!10040-101F4;0.163969!10470-106I2;0.537205!10415-106C1;0.962638!10198-103E9;0.777754!10614-108G2;0.0059815!10612-108F9;0.720398!10549-107H9;0.101378!10615-108G3;0.245698!10487-107B1;0.284315!10433-106E1;0.00256938!10688-109F4;0.108584!10444-106F3;0.64846!10444-106F3;0.227713!10485-107A8;0.151712!10413-106B8;0.735574!10175-103C4;0.445567!10161-103A8;0.925536!12131-128D7;0.978997!10624-108H3;0.00416126!10712-109I1;0.448876!10205-103F7;0.0198169!10206-103F8;0.0370253!10207-103F9;0.105399!10050-101G5;0.471132!10051-101G6;0.0330268!10016-101C7;0.23821!10046-101G1;0.194768!10778-110G4;0.134988!10633-108I3;0.0352162!10818-111B8;0.299062!10819-111B9;0.663179!10820-111C1;0.506663!10484-107A7;0.588568!10808-111A7;0.179883!10169-103B7;0.134122!10153-102I9;0.808956!13425-144D5;0.444687!13433-144E4;0.695373!13437-144E8;0.408557!11904-125F5;0.867129!11905-125F6;0.413125!10039-101F3;0.411044!10791-110H8;0.52343!10017-101C8;0.770635!10045-101F9;0.0602058!10509-107D5;0.259418!10839-111E2;0.00679791!10692-109F8;0.024647!10079-102A7;0.416083!10078-102A6;0.0546365!10721-110A1;0.169803!10569-108B2;0.00146711!10570-108B3;0.00606754!10571-108B4;0.01217!10647-109A8;0.0368934!10752-110D5;0.858826!10782-110G8;0.0351926!10726-110A6;0.0191344!10018-101C9;0.947754!10086-102B5;0.0702036!10182-103D2;0.293907!10165-103B3;0.81041!10499-107C4;0.500223!10408-106B3;0.253172!10019-101D1;0.922104!10068-101I5;0.00594038!10075-102A3;0.0504633!10077-102A5;0.0465629!10727-110A7;0.508232!10775-110G1;0.222723!10412-106B7;0.704591!12231-129F8;0.693093!12232-129F9;0.181705!12233-129G1;0.61906!12234-129G2;0.330392!10414-106B9;0.147655!10170-103B8;0.0124128!10183-103D3;0.598827!10150-102I6;0.796109!10174-103C3;0.519897!10155-103A2;0.678895!10038-101F2;0.427262!10838-111E1;0.390628!10759-110E3;0.258547!10514-107E1;0.472744!10465-106H6;0.114817!10691-109F7;0.399541!10843-111E6;0.706778!10844-111E7;0.0460894!11747-123G1;0.517806!11748-123G2;0.0419502!11749-123G3;0.0635223!11750-123G4;0.0732646!11751-123G5;0.163226!11840-124H4;0.0965247!11752-123G6;0.113105!11753-123G7;0.343812!11754-123G8;0.150043!11755-123G9;0.296898!11756-123H1;0.131172!11833-124G6;0.360528!11760-123H5;0.920033!11836-124G9;0.353138!11758-123H3;0.10359!11835-124G8;0.00816683!11762-123H7;0.0592299!11838-124H2;0.240754!11757-123H2;0.0783429!11759-123H4;0.254188!11761-123H6;0.188748!11842-124H6;0.45016!11837-124H1;0.319297!10568-108B1;0.0214719!13230-141I8;0.0670691!13231-141I9;0.0451242!10696-109G3;0.102983!10493-107B7;0.670852!10494-107B8;0.980076!10850-111F4;0.769893!10851-111F5;0.50382!10852-111F6;0.00240042!10853-111F7;0.00117206!10854-111F8;0.383167!10855-111F9;0.811802!10856-111G1;0.693641!10847-111F1;0.180355!10846-111E9;0.338313!10848-111F2;0.435121!10845-111E8;0.416109!10857-111G2;0.50436!10858-111G3;0.735626!10156-103A3;0.0368233!11901-125F2;0.650997!11902-125F3;0.560308!11903-125F4;0.461214!10689-109F5;0.378683!10648-109A9;0.277244!10784-110H1;0.688497!10744-110C6;0.0938942!10772-110F7;0.265781!10474-106I6;0.782475!10600-108E6;0.559941!10684-109E9;0.217729!12226-129F3;0.715517!12227-129F4;0.959063!10508-107D4;0.298356!10539-107G8;0.108774!10607-108F4;0.080902!10555-107I6;0.266423!10774-110F9;0.0154609!10637-108I7;0.258925!10663-109C6;0.07151!10728-110A8;0.164352!10729-110A9;0.284867!10430-106D7;0.00615703!10730-110B1;0.00422061!10813-111B3;0.257514!10812-111B2;0.0135932!10037-101F1;0.0186324!10172-103C1;0.511305!10163-103B1;0.786155!10076-102A4;0.569061!10073-102A1;0.840486!10036-101E9;0.897097!10195-103E6;0.615846!10277-104E7;0.554394!10434-106E2;0.123664!10550-107I1;0.495658!10545-107H5;0.116697!10544-107H4;0.567952!10704-109H2;0.938338!10510-107D6;0.0580534!10558-107I9;0.507597!10020-101D2;0.566161!10732-110B3;0.275832!10049-101G4;0.182416!10698-109G5;0.441743!10437-106E5;0.445301!10417-106C3;0.444325!10035-101E8;0.145641!10171-103B9;0.636875!10157-103A4;0.88304!10034-101E7;0.54063!10072-101I9;0.622908!10199-103F1;0.744506!10200-103F2;0.107815!10697-109G4;0.0115228!10723-110A3;0.0795595!10179-103C8;0.139667!10160-103A7;0.365187!10180-103C9;0.843963!10162-103A9;0.899392!10021-101D3;0.783236!10840-111E3;0.0214719!10706-109H4;0.135876!10033-101E6;0.610817!10032-101E5;0.542989!10490-107B4;0.639162!10439-106E7;0.502088!10022-101D4;0.549737!10176-103C5;0.0140092!10469-106I1;0.755742!10067-101I4;0.361183!10411-106B6;0.0439006!10471-106I3;0.0743781!10030-101E3;0.802366!10475-106I7;0.131279!10787-110H4;0.0887729!10477-106I9;0.643317!10695-109G2;0.943263!11771-123I7;0.547596!11772-123I8;0.315006!11773-123I9;0.350439!10093-102C3;0.200321!10442-106F1;0.0245809!10442-106F1;0.0505549!10201-103F3;0.0531664!10639-108I9;0.15738!11843-124H7;0.72208!11841-124H5;0.872157!10693-109F9;0.645078!10436-106E4;0.772446!10483-107A6;0.104103!10282-104F3;0.622203!10023-101D5;0.367149!10066-101I3;0.226922!10065-101I2;0.0780986!10800-110I8;0.0202474!10610-108F7;0.109345!10841-111E4;0.0863455!10541-107H1;0.213734!10842-111E5;0.0910467!10562-108A4;0.0453878!10024-101D6;0.860581!10064-101I1;0.00204191!10609-108F6;0.0434638!10048-101G3;0.630852!10781-110G7;0.0987195!10181-103D1;0.0981711!10159-103A6;0.892424!10056-101H2;0.726536!10737-110B8;0.364364!10025-101D7;0.0370236!10044-101F8;0.970789!10424-106D1;0.655904!10463-106H4;0.0527684!10616-108G4;0.698218!10486-107A9;0.192735!10062-101H8;0.139189!10202-103F4;0.0191511!10158-103A5;0.0524999!10441-106E9;0.839675!10031-101E4;0.338674!10063-101H9;0.565405!10063-101H9;0.939952!11763-123H8;0.0155939!11765-123I1;0.0401428!11768-123I4;0.117281!10807-111A6;0.00484091!10790-110H7;0.355534!10798-110I6;0.908919!10786-110H3;0.5921!10591-108D6;0.708362!10593-108D8;0.151808!10590-108D5;0.569495!10026-101D8;0.409597!10096-102C6;2.80554e-19!10168-103B6;1.34601e-19!10154-103A1;0.910844!10209-103G2;0.909008!10061-101H7;0.00715601!10027-101D9;0.00785829!10043-101F7;0.170952!10783-110G9;0.915807!10028-101E1;0.0526509!10060-101H6;0.0472744!10203-103F5;0.0146076!10059-101H5;0.00707822!10047-101G2;0.0169342!10029-101E2;0.00701466!10058-101H4;0.00391269!10418-106C4;0.00557164!10492-107B6;0.585997!10694-109G1;0.28443!10797-110I5;0.392927!10057-101H3;0.797349!10100-102D1;0.00217607!10055-101H1;0.0984763!10204-103F6;0.076125!10191-103E2;0.387541!10563-108A5;0.0036432
|name=CATTRTGACG,motif6,CNhs12998,T:457.0(10.92%),B:1694.9(2.30%),P:1e-161
|name=CATTRTGACG,motif6,CNhs12998,T:457.0(10.92%),B:1694.9(2.30%),P:1e-161
|tomtom_result=Sox2#MA0143.1;1;0.00265981;1.26607;1;10;CATTATGACG;CCTTTGTTATGCAAA;+!CREB1#MA0018.1;0;0.00361346;1.72001;1;10;CATTATGACG;CCTGGTGACGTC;+!Pou5f1#MA0142.1;0;0.00422554;2.01136;1;10;CATTATGACG;CTTTGTTATGCAAAT;+!Abd-B#MA0165.1;-1;0.00441413;2.10113;1;7;CATTATGACG;TTTATGA;+!SOX10#MA0442.1;0;0.00597834;2.84569;1;6;CATTATGACG;CTTTGT;+!ABF1#MA0265.1;5;0.00879446;4.18616;1;10;CATTATGACG;TCGTATAAAGTGATAA;+!exd#MA0222.1;-2;0.0103986;4.94972;1;8;CATTATGACG;TTTTGACA;+!CG42234#MA0174.1;-1;0.0114107;5.4315;1;7;CATTATGACG;TTTATTA;+!MATA1#MA0327.1;-1;0.0120906;5.75511;1;7;CATTATGACG;ATTGTGC;-!NFE2L1::MafG#MA0089.1;-3;0.0123188;5.86374;1;6;CATTATGACG;CATGAC;+!CUP9#MA0288.1;-1;0.014256;6.78588;1;9;CATTATGACG;AATGTGTCA;-!H2.0#MA0448.1;-1;0.0188858;8.98964;1;7;CATTATGACG;TTAATTA;+!Sox17#MA0078.1;2;0.0190232;9.05506;1;7;CATTATGACG;TTCATTGTC;+!SRY#MA0084.1;-1;0.0190232;9.05506;1;9;CATTATGACG;ATTGTTTAC;-
}}
}}

Latest revision as of 13:41, 7 September 2012

Full Name: CATTRTGACG,motif6,CNhs12998,T:457.0(10.92%),B:1694.9(2.30%),P:1e-161

Motif matrix
POACGT
12.742297.05105.1152.098
2311.2177.3120.457138.014
30.45727.420.457428.666
40.4570.4570.457455.629
5233.070.457219.364.113
60.4570.45718.737437.349
75.4840.457437.80613.253
8419.0690.45722.8514.624
942.044249.52253.012112.422
10108.76674.948246.7826.506

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
Sox2#MA0143.110.002659811.26607110CATTATGACGCCTTTGTTATGCAAA+
CREB1#MA0018.100.003613461.72001110CATTATGACGCCTGGTGACGTC+
Pou5f1#MA0142.100.004225542.01136110CATTATGACGCTTTGTTATGCAAAT+
Abd-B#MA0165.1-10.004414132.1011317CATTATGACGTTTATGA+
SOX10#MA0442.100.005978342.8456916CATTATGACGCTTTGT+
ABF1#MA0265.150.008794464.18616110CATTATGACGTCGTATAAAGTGATAA+
exd#MA0222.1-20.01039864.9497218CATTATGACGTTTTGACA+
CG42234#MA0174.1-10.01141075.431517CATTATGACGTTTATTA+
MATA1#MA0327.1-10.01209065.7551117CATTATGACGATTGTGC-
NFE2L1::MafG#MA0089.1-30.01231885.8637416CATTATGACGCATGAC+
CUP9#MA0288.1-10.0142566.7858819CATTATGACGAATGTGTCA-
H2.0#MA0448.1-10.01888588.9896417CATTATGACGTTAATTA+
Sox17#MA0078.120.01902329.0550617CATTATGACGTTCATTGTC+
SRY#MA0084.1-10.01902329.0550619CATTATGACGATTGTTTAC-
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