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MacroAPE 1083:CCCCCTCTCTCC,motif580: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;55.43;363.91;17.352;45.308!2;4.338;447.296;10.604;19.762!3;29.402;330.652;80.012;41.934!4;37.596;302.696;0.482;141.226!5;8.194;404.398;0.482...")
 
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9;0.881097!10788-110H5;0.927292!10792-110H9;0.891393!10765-110E9;0.585728!10829-111D1;0.950208!10830-111D2;0.973805!10831-111D3;0.483159!10832-111D4;0.645462!10833-111D5;0.824349!10764-110E8;0.70867!10770-110F5;0.649746!10399-106A3;0.326691!10400-106A4;0.375957!10405-106A9;0.287546!10834-111D6;0.294879!10835-111D7;0.792186!10836-111D8;0.640358!10837-111D9;0.247233!10699-109G6;0.0252792!10802-111A1;0.358278!10796-110I4;0.26771!10010-101C1;0.970825!10810-111A9;0.889868!10421-106C7;0.834041!10708-109H6;0.674104!12235-129G3;0.590361!12236-129G4;0.476752!12237-129G5;0.270295!10167-103B5;0.615699!10151-102I7;0.251428!10428-106D5;0.414984!10795-110I3;0.558012!10805-111A4;0.910372!10052-101G7;0.217158!10189-103D9;0.443902!10589-108D4;0.258995!10425-106D2;0.844865!10427-106D4;0.315177!10702-109G9;0.633634!10432-106D9;0.86205!10496-107C1;0.260779!10718-109I7;0.739899!10011-101C2;0.894137!10053-101G8;0.996133!10686-109F2;0.0711485!10084-102B3;0.852221!10012-101C3;0.310315!10085-102B4;0.308157!10482-107A5;0.249314!10419-106C5;0.589565!10080-102A8;0.609632!10760-110E4;0.91659!10709-109H7;0.880701!10710-109H8;0.834819!10703-109H1;0.931357!10719-109I8;0.0831212!10642-109A3;0.188301!10177-103C6;0.254567!10164-103B2;0.437503!10173-103C2;0.413884!10166-103B4;0.237794!10083-102B2;0.219237!10188-103D8;0.184782!10552-107I3;0.338187!10553-107I4;0.832184!10013-101C4;0.691513!10536-107G5;0.952114!10618-108G6;0.389995!10423-106C9;0.326971!10785-110H2;0.543398!12238-129G6;0.106769!12239-129G7;0.174475!12240-129G8;0.539621!10416-106C2;0.305835!10801-110I9;0.52686!10766-110F1;0.545002!10824-111C5;0.288008!10825-111C6;0.615995!10826-111C7;0.579264!10454-106G4;0.606552!10409-106B4;0.891941!10638-108I8;0.38492!10636-108I6;0.808495!10513-107D9;0.784855!10420-106C6;0.698058!10082-102B1;0.999344!10014-101C5;0.577603!10070-101I7;0.561095!10452-106G2;0.955741!10453-106G3;0.78046!10449-106F8;0.677856!10042-101F6;0.569671!10069-101I6;0.652459!10193-103E4;0.864815!10631-108I1;0.464783!10438-106E6;0.441624!10488-107B2;0.933546!10196-103E7;0.649578!10071-101I8;0.843228!10071-101I8;0.673315!10041-101F5;0.360326!10451-106G1;0.630696!10450-106F9;0.741747!10604-108F1;0.451428!10605-108F2;0.383712!10606-108F3;0.118276!10603-108E9;0.244625!10497-107C2;0.619238!10448-106F7;0.188297!10643-109A4;0.535948!10426-106D3;0.979445!10431-106D8;0.86511!10197-103E8;0.365785!10443-106F2;0.385277!10815-111B5;0.671639!10816-111B6;0.829941!10817-111B7;0.761166!10015-101C6;0.973121!10410-106B5;0.65359!10054-101G9;0.819135!10758-110E2;0.440469!10711-109H9;0.879568!10040-101F4;0.979995!10470-106I2;0.28074!10415-106C1;0.428533!10198-103E9;0.25576!10614-108G2;0.613199!10612-108F9;0.676691!10549-107H9;0.580613!10615-108G3;0.835911!10487-107B1;0.577393!10433-106E1;0.104598!10688-109F4;0.533991!10444-106F3;0.141034!10444-106F3;0.862378!10485-107A8;0.754893!10413-106B8;0.844363!10175-103C4;0.187725!10161-103A8;0.74758!12131-128D7;0.857883!10624-108H3;0.171226!10712-109I1;0.658481!10205-103F7;0.898249!10206-103F8;0.448998!10207-103F9;0.333594!10050-101G5;0.696005!10051-101G6;0.452946!10016-101C7;0.901604!10046-101G1;0.672974!10778-110G4;0.928406!10633-108I3;0.5399!10818-111B8;0.77185!10819-111B9;0.720139!10820-111C1;0.688726!10484-107A7;0.760166!10808-111A7;0.443463!10169-103B7;0.603828!10153-102I9;0.329268!13425-144D5;0.407945!13433-144E4;0.665794!13437-144E8;0.546744!11904-125F5;0.352361!11905-125F6;0.144035!10039-101F3;0.221303!10791-110H8;0.285614!10017-101C8;0.935733!10045-101F9;0.819198!10509-107D5;0.635296!10839-111E2;0.244642!10692-109F8;0.365277!10079-102A7;0.846704!10078-102A6;0.77139!10721-110A1;0.786287!10569-108B2;0.474173!10570-108B3;0.927864!10571-108B4;0.982914!10647-109A8;0.801822!10752-110D5;0.556681!10782-110G8;0.360618!10726-110A6;0.52989!10018-101C9;0.385154!10086-102B5;0.756197!10182-103D2;0.635672!10165-103B3;0.344541!10499-107C4;0.515132!10408-106B3;0.886767!10019-101D1;0.535534!10068-101I5;0.671301!10075-102A3;0.40541!10077-102A5;0.815048!10727-110A7;0.19419!10775-110G1;0.393724!10412-106B7;0.470397!12231-129F8;0.893335!12232-129F9;0.977645!12233-129G1;0.838344!12234-129G2;0.955974!10414-106B9;0.921321!10170-103B8;0.802695!10183-103D3;0.21058!10150-102I6;0.210923!10174-103C3;0.304374!10155-103A2;0.463071!10038-101F2;0.572253!10838-111E1;0.426543!10759-110E3;0.353257!10514-107E1;0.154716!10465-106H6;0.723699!10691-109F7;0.00652276!10843-111E6;0.726225!10844-111E7;0.367232!11747-123G1;0.165987!11748-123G2;0.0135534!11749-123G3;0.0214076!11750-123G4;0.0640522!11751-123G5;0.0191281!11840-124H4;0.0864568!11752-123G6;0.460391!11753-123G7;0.203149!11754-123G8;0.00291229!11755-123G9;0.0627968!11756-123H1;0.314234!11833-124G6;0.910616!11760-123H5;0.856178!11836-124G9;0.799526!11758-123H3;0.424305!11835-124G8;0.347812!11762-123H7;0.356694!11838-124H2;0.868932!11757-123H2;0.867897!11759-123H4;0.985684!11761-123H6;0.415169!11842-124H6;0.979709!11837-124H1;0.9781!10568-108B1;0.456626!13230-141I8;0.76291!13231-141I9;0.23441!10696-109G3;0.264213!10493-107B7;0.224505!10494-107B8;0.626388!10850-111F4;0.155035!10851-111F5;0.953096!10852-111F6;0.127767!10853-111F7;0.311451!10854-111F8;0.812562!10855-111F9;0.835954!10856-111G1;0.860254!10847-111F1;0.709026!10846-111E9;0.724204!10848-111F2;0.831895!10845-111E8;0.867673!10857-111G2;0.581454!10858-111G3;0.75168!10156-103A3;0.91054!11901-125F2;0.339907!11902-125F3;0.333462!11903-125F4;0.36396!10689-109F5;0.307986!10648-109A9;0.836123!10784-110H1;0.524491!10744-110C6;0.73771!10772-110F7;0.942619!10474-106I6;0.641931!10600-108E6;0.579337!10684-109E9;0.532212!12226-129F3;0.144093!12227-129F4;0.426364!10508-107D4;0.809745!10539-107G8;0.217295!10607-108F4;0.0249402!10555-107I6;0.0665085!10774-110F9;0.0872486!10637-108I7;0.0203447!10663-109C6;0.0428811!10728-110A8;0.0249114!10729-110A9;0.457233!10430-106D7;0.449042!10730-110B1;0.98262!10813-111B3;0.87799!10812-111B2;0.796063!10037-101F1;0.954222!10172-103C1;0.346979!10163-103B1;0.231818!10076-102A4;0.364805!10073-102A1;0.294149!10036-101E9;0.328472!10195-103E6;0.250692!10277-104E7;0.288519!10434-106E2;0.56423!10550-107I1;0.907699!10545-107H5;0.62229!10544-107H4;0.203496!10704-109H2;0.796278!10510-107D6;0.918431!10558-107I9;0.945473!10020-101D2;0.0985017!10732-110B3;0.694484!10049-101G4;0.350854!10698-109G5;0.816022!10437-106E5;0.920116!10417-106C3;0.147975!10035-101E8;0.476537!10171-103B9;0.269042!10157-103A4;0.286036!10034-101E7;0.286744!10072-101I9;0.260247!10199-103F1;0.40544!10200-103F2;0.151331!10697-109G4;0.993409!10723-110A3;0.564696!10179-103C8;0.449203!10160-103A7;0.119533!10180-103C9;0.197436!10162-103A9;0.316618!10021-101D3;0.369626!10840-111E3;0.239614!10706-109H4;0.371615!10033-101E6;0.87567!10032-101E5;0.272115!10490-107B4;0.244738!10439-106E7;0.899652!10022-101D4;0.798236!10176-103C5;0.703686!10469-106I1;0.39874!10067-101I4;0.811178!10411-106B6;0.549673!10471-106I3;0.99905!10030-101E3;0.355482!10475-106I7;0.545102!10787-110H4;0.129742!10477-106I9;0.664477!10695-109G2;0.610313!11771-123I7;0.862084!11772-123I8;0.961221!11773-123I9;0.485892!10093-102C3;0.823533!10442-106F1;0.697384!10442-106F1;0.666788!10201-103F3;0.834296!10639-108I9;0.906703!11843-124H7;0.366744!11841-124H5;0.529072!10693-109F9;0.458624!10436-106E4;0.97951!10483-107A6;0.807474!10282-104F3;0.795607!10023-101D5;0.900736!10066-101I3;0.969144!10065-101I2;0.522926!10800-110I8;0.601824!10610-108F7;0.810694!10841-111E4;0.0317435!10541-107H1;0.66131!10842-111E5;0.707451!10562-108A4;0.339888!10024-101D6;0.352808!10064-101I1;0.424868!10609-108F6;0.952298!10048-101G3;0.526806!10781-110G7;0.283438!10181-103D1;0.949231!10159-103A6;0.42223!10056-101H2;0.853997!10737-110B8;0.262661!10025-101D7;0.700756!10044-101F8;0.376708!10424-106D1;0.473172!10463-106H4;0.427438!10616-108G4;0.837104!10486-107A9;0.688167!10062-101H8;0.587675!10202-103F4;0.647628!10158-103A5;0.352904!10441-106E9;0.825481!10031-101E4;0.977296!10063-101H9;0.260101!10063-101H9;0.326544!11763-123H8;0.626355!11765-123I1;0.342866!11768-123I4;0.488449!10807-111A6;0.193484!10790-110H7;0.677226!10798-110I6;0.876347!10786-110H3;0.220184!10591-108D6;0.846587!10593-108D8;0.857497!10590-108D5;0.818556!10026-101D8;0.942464!10096-102C6;0.37188!10168-103B6;0.756055!10154-103A1;0.447186!10209-103G2;0.669833!10061-101H7;0.436145!10027-101D9;0.942632!10043-101F7;0.255607!10783-110G9;0.108232!10028-101E1;0.558096!10060-101H6;0.900626!10203-103F5;0.0772527!10059-101H5;0.739155!10047-101G2;0.848634!10029-101E2;0.125099!10058-101H4;0.380647!10418-106C4;0.93982!10492-107B6;0.601896!10694-109G1;0.579151!10797-110I5;0.856114!10057-101H3;0.326967!10100-102D1;0.833961!10055-101H1;0.939964!10204-103F6;0.865449!10191-103E2;0.86917!10563-108A5;0.486917
|name=CCCCCTCTCTCC,motif580,CNhs11772,T:482.0(13.94%),B:5609.6(8.05%),P:1e-30
|name=CCCCCTCTCTCC,motif580,CNhs11772,T:482.0(13.94%),B:5609.6(8.05%),P:1e-30
|tomtom_result=Trl#MA0205.1;-1;0.000256972;0.122319;0.244576;10;CCCCCTCTCTCC;TTGCTCTCTC;+!YML081W#MA0431.1;0;0.000607954;0.289386;0.246508;9;CCCCCTCTCTCC;ACCCCGCAC;+!SP1#MA0079.2;-1;0.000777009;0.369856;0.246508;10;CCCCCTCTCTCC;CCCCGCCCCC;+!YGR067C#MA0425.1;0;0.00130712;0.622191;0.311017;12;CCCCCTCTCTCC;ACCCCACTTTTTTG;+!YER130C#MA0423.1;0;0.00390641;1.85945;0.743593;9;CCCCCTCTCTCC;ACCCCTATT;+!Pax4#MA0068.1;18;0.00541071;2.5755;0.858281;12;CCCCCTCTCTCC;GAAAAATTTCCCATACTCCACTCCCCCCCC;+!MSN2#MA0341.1;-1;0.00840755;4.00199;0.973996;5;CCCCCTCTCTCC;CCCCT;-!MSN4#MA0342.1;-1;0.00896011;4.26501;0.973996;5;CCCCCTCTCTCC;CCCCT;-!Gata1#MA0035.2;-1;0.00984799;4.68764;0.973996;11;CCCCCTCTCTCC;TTCTTATCTGT;-!PLAG1#MA0163.1;0;0.0102336;4.87121;0.973996;12;CCCCCTCTCTCC;CCCCCTTGGGCCCC;-!RGM1#MA0366.1;-1;0.0114759;5.46253;0.976797;5;CCCCCTCTCTCC;CCCCT;-!Klf4#MA0039.1;-1;0.0130165;6.19585;0.976797;10;CCCCCTCTCTCC;CCTTCCTTTA;-!opa#MA0456.1;1;0.0136991;6.52079;0.976797;11;CCCCCTCTCTCC;GACCCCCCGCTG;+!MIG1#MA0337.1;0;0.0143683;6.83931;0.976797;7;CCCCCTCTCTCC;CCCCCGC;+!PPARG::RXRA#MA0065.2;0;0.0194175;9.24274;0.999747;12;CCCCCTCTCTCC;TGACCTTTGCCCTAC;-
}}
}}

Latest revision as of 14:06, 7 September 2012

Full Name: CCCCCTCTCTCC,motif580,CNhs11772,T:482.0(13.94%),B:5609.6(8.05%),P:1e-30

Motif matrix
POACGT
155.43363.9117.35245.308
24.338447.29610.60419.762
329.402330.65280.01241.934
437.596302.6960.482141.226
58.194404.3980.48268.926
620.24486.7694.954280.042
722.654373.550.96484.832
80.4821.9289.158470.432
919.762413.55611.08637.596
1015.42473.2640.482392.83
1153.984353.30641.93432.776
1239.042381.2620.48261.214

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
Trl#MA0205.1-10.0002569720.1223190.24457610CCCCCTCTCTCCTTGCTCTCTC+
YML081W#MA0431.100.0006079540.2893860.2465089CCCCCTCTCTCCACCCCGCAC+
SP1#MA0079.2-10.0007770090.3698560.24650810CCCCCTCTCTCCCCCCGCCCCC+
YGR067C#MA0425.100.001307120.6221910.31101712CCCCCTCTCTCCACCCCACTTTTTTG+
YER130C#MA0423.100.003906411.859450.7435939CCCCCTCTCTCCACCCCTATT+
Pax4#MA0068.1180.005410712.57550.85828112CCCCCTCTCTCCGAAAAATTTCCCATACTCCACTCCCCCCCC+
MSN2#MA0341.1-10.008407554.001990.9739965CCCCCTCTCTCCCCCCT-
MSN4#MA0342.1-10.008960114.265010.9739965CCCCCTCTCTCCCCCCT-
Gata1#MA0035.2-10.009847994.687640.97399611CCCCCTCTCTCCTTCTTATCTGT-
PLAG1#MA0163.100.01023364.871210.97399612CCCCCTCTCTCCCCCCCTTGGGCCCC-
RGM1#MA0366.1-10.01147595.462530.9767975CCCCCTCTCTCCCCCCT-
Klf4#MA0039.1-10.01301656.195850.97679710CCCCCTCTCTCCCCTTCCTTTA-
opa#MA0456.110.01369916.520790.97679711CCCCCTCTCTCCGACCCCCCGCTG+
MIG1#MA0337.100.01436836.839310.9767977CCCCCTCTCTCCCCCCCGC+
PPARG::RXRA#MA0065.200.01941759.242740.99974712CCCCCTCTCTCCTGACCTTTGCCCTAC-
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