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MacroAPE 1083:Motif TCACNG: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!01;0;0;0;24128!02;0;24128;0;0!03;24128;0;0;0!04;0;24128;0;0!05;6032;6032;6032;6032!06;0;0;24128;0 |macroape_1083_sample_pvalues=11376-118A8;0...")
 
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0789-110H6;0.737373!10828-111C9;0.995667!10788-110H5;0.49517!10792-110H9;0.417082!10765-110E9;0.563499!10829-111D1;0.682167!10830-111D2;0.629201!10831-111D3;0.315627!10832-111D4;0.848912!10833-111D5;0.82454!10764-110E8;0.640346!10770-110F5;0.853475!10399-106A3;0.77454!10400-106A4;0.758431!10405-106A9;0.707943!10834-111D6;0.764098!10835-111D7;0.873921!10836-111D8;0.738924!10837-111D9;0.370387!10699-109G6;0.324638!10802-111A1;0.71752!10796-110I4;0.425698!10010-101C1;0.471153!10810-111A9;0.940404!10421-106C7;0.410932!10708-109H6;0.655779!12235-129G3;0.91699!12236-129G4;0.690119!12237-129G5;0.526255!10167-103B5;0.680298!10151-102I7;0.942663!10428-106D5;0.927714!10795-110I3;0.389049!10805-111A4;0.791233!10052-101G7;0.508297!10189-103D9;0.989299!10589-108D4;0.80992!10425-106D2;0.328462!10427-106D4;0.819768!10702-109G9;0.68947!10432-106D9;0.777451!10496-107C1;0.403658!10718-109I7;0.270436!10011-101C2;0.66318!10053-101G8;0.969456!10686-109F2;0.226808!10084-102B3;0.419684!10012-101C3;0.84623!10085-102B4;0.967031!10482-107A5;0.805425!10419-106C5;0.0734146!10080-102A8;0.293825!10760-110E4;0.660617!10709-109H7;0.158158!10710-109H8;0.172259!10703-109H1;0.181601!10719-109I8;0.329448!10642-109A3;0.451097!10177-103C6;0.557965!10164-103B2;0.928136!10173-103C2;0.81975!10166-103B4;0.998781!10083-102B2;0.998689!10188-103D8;0.855782!10552-107I3;0.933215!10553-107I4;0.596507!10013-101C4;0.746998!10536-107G5;0.596685!10618-108G6;0.610339!10423-106C9;0.471787!10785-110H2;0.375393!12238-129G6;0.432108!12239-129G7;0.673869!12240-129G8;0.685841!10416-106C2;0.693009!10801-110I9;0.719963!10766-110F1;0.439263!10824-111C5;0.510489!10825-111C6;0.727734!10826-111C7;0.679105!10454-106G4;0.831636!10409-106B4;0.780056!10638-108I8;0.383778!10636-108I6;0.664707!10513-107D9;0.795033!10420-106C6;0.550735!10082-102B1;0.399407!10014-101C5;0.379222!10070-101I7;0.600389!10452-106G2;0.599248!10453-106G3;0.77451!10449-106F8;0.757397!10042-101F6;0.668695!10069-101I6;0.985356!10193-103E4;0.993137!10631-108I1;0.87823!10438-106E6;0.682628!10488-107B2;0.314647!10196-103E7;0.978154!10071-101I8;0.450853!10071-101I8;0.589837!10041-101F5;0.874393!10451-106G1;0.867306!10450-106F9;0.934069!10604-108F1;0.472817!10605-108F2;0.978179!10606-108F3;0.699198!10603-108E9;0.866395!10497-107C2;0.832197!10448-106F7;0.300775!10643-109A4;0.93681!10426-106D3;0.759824!10431-106D8;0.35835!10197-103E8;0.2355!10443-106F2;0.786424!10815-111B5;0.184762!10816-111B6;0.488175!10817-111B7;0.553779!10015-101C6;0.512881!10410-106B5;0.656209!10054-101G9;0.865368!10758-110E2;0.67749!10711-109H9;0.407382!10040-101F4;0.37044!10470-106I2;0.92833!10415-106C1;0.109088!10198-103E9;0.231507!10614-108G2;0.64669!10612-108F9;0.0377741!10549-107H9;0.264294!10615-108G3;0.236984!10487-107B1;0.934824!10433-106E1;0.811498!10688-109F4;0.567715!10444-106F3;0.407995!10444-106F3;0.480092!10485-107A8;0.536513!10413-106B8;0.516054!10175-103C4;0.910497!10161-103A8;0.938503!12131-128D7;0.961784!10624-108H3;0.868992!10712-109I1;0.752876!10205-103F7;0.413575!10206-103F8;0.667984!10207-103F9;0.867459!10050-101G5;0.490946!10051-101G6;0.996072!10016-101C7;0.446398!10046-101G1;0.559723!10778-110G4;0.809461!10633-108I3;0.650813!10818-111B8;0.948187!10819-111B9;0.229425!10820-111C1;0.268878!10484-107A7;0.221988!10808-111A7;0.71344!10169-103B7;0.810597!10153-102I9;0.93144!13425-144D5;0.939162!13433-144E4;0.119272!13437-144E8;0.158286!11904-125F5;0.151866!11905-125F6;0.0810241!10039-101F3;0.112835!10791-110H8;0.903968!10017-101C8;0.288341!10045-101F9;0.481698!10509-107D5;0.443065!10839-111E2;0.411628!10692-109F8;0.720443!10079-102A7;0.414264!10078-102A6;0.905443!10721-110A1;0.524424!10569-108B2;0.87637!10570-108B3;0.772087!10571-108B4;0.898334!10647-109A8;0.775642!10752-110D5;0.605967!10782-110G8;0.63104!10726-110A6;0.637026!10018-101C9;0.373171!10086-102B5;0.627874!10182-103D2;0.887242!10165-103B3;0.923121!10499-107C4;0.916603!10408-106B3;0.551216!10019-101D1;0.0914131!10068-101I5;0.898397!10075-102A3;0.783712!10077-102A5;0.665703!10727-110A7;0.942631!10775-110G1;0.803384!10412-106B7;0.684573!12231-129F8;0.17327!12232-129F9;0.660306!12233-129G1;0.901592!12234-129G2;0.712702!10414-106B9;0.703451!10170-103B8;0.355157!10183-103D3;0.996317!10150-102I6;0.964239!10174-103C3;0.998684!10155-103A2;0.827549!10038-101F2;0.943113!10838-111E1;0.952424!10759-110E3;0.577815!10514-107E1;0.240695!10465-106H6;0.655014!10691-109F7;0.953731!10843-111E6;0.365693!10844-111E7;0.552935!11747-123G1;0.324302!11748-123G2;0.913722!11749-123G3;0.852111!11750-123G4;0.997438!11751-123G5;0.578388!11840-124H4;0.720726!11752-123G6;0.801343!11753-123G7;0.461977!11754-123G8;0.770144!11755-123G9;0.751134!11756-123H1;0.908594!11833-124G6;0.956223!11760-123H5;0.724713!11836-124G9;0.927389!11758-123H3;0.439346!11835-124G8;0.970668!11762-123H7;0.719814!11838-124H2;0.998131!11757-123H2;0.881104!11759-123H4;0.982664!11761-123H6;0.980333!11842-124H6;0.923533!11837-124H1;0.621695!10568-108B1;0.639182!13230-141I8;0.761537!13231-141I9;0.865915!10696-109G3;0.866847!10493-107B7;0.517347!10494-107B8;0.85882!10850-111F4;0.149433!10851-111F5;0.308073!10852-111F6;0.261109!10853-111F7;0.451671!10854-111F8;0.577724!10855-111F9;0.128546!10856-111G1;0.160668!10847-111F1;0.307425!10846-111E9;0.421084!10848-111F2;0.328118!10845-111E8;0.280662!10857-111G2;0.358986!10858-111G3;0.514902!10156-103A3;0.786014!11901-125F2;0.987677!11902-125F3;0.0799523!11903-125F4;0.187147!10689-109F5;0.321919!10648-109A9;0.871336!10784-110H1;0.496863!10744-110C6;0.815402!10772-110F7;0.497134!10474-106I6;0.21899!10600-108E6;0.599478!10684-109E9;0.520241!12226-129F3;0.190273!12227-129F4;0.61466!10508-107D4;0.720346!10539-107G8;0.501468!10607-108F4;0.635904!10555-107I6;0.48304!10774-110F9;0.625639!10637-108I7;0.0776239!10663-109C6;0.526789!10728-110A8;0.610055!10729-110A9;0.273511!10430-106D7;0.707714!10730-110B1;0.472008!10813-111B3;0.384678!10812-111B2;0.601523!10037-101F1;0.860799!10172-103C1;0.905286!10163-103B1;0.956109!10076-102A4;0.963951!10073-102A1;0.945308!10036-101E9;0.776364!10195-103E6;0.919409!10277-104E7;0.963264!10434-106E2;0.866046!10550-107I1;0.248741!10545-107H5;0.275825!10544-107H4;0.279424!10704-109H2;0.323218!10510-107D6;0.610983!10558-107I9;0.414904!10020-101D2;0.441885!10732-110B3;0.684254!10049-101G4;0.516432!10698-109G5;0.28488!10437-106E5;0.48162!10417-106C3;0.770139!10035-101E8;0.746598!10171-103B9;0.955673!10157-103A4;0.93099!10034-101E7;0.967403!10072-101I9;0.965723!10199-103F1;0.765784!10200-103F2;0.205508!10697-109G4;0.803532!10723-110A3;0.999151!10179-103C8;0.0226785!10160-103A7;0.569474!10180-103C9;0.905127!10162-103A9;0.499028!10021-101D3;0.353097!10840-111E3;0.723142!10706-109H4;0.543499!10033-101E6;0.408017!10032-101E5;0.945963!10490-107B4;0.937415!10439-106E7;0.426816!10022-101D4;0.164888!10176-103C5;0.465697!10469-106I1;0.934098!10067-101I4;0.659726!10411-106B6;0.357107!10471-106I3;0.42759!10030-101E3;0.640839!10475-106I7;0.712718!10787-110H4;0.371584!10477-106I9;0.537044!10695-109G2;0.347562!11771-123I7;0.930411!11772-123I8;0.917214!11773-123I9;0.77751!10093-102C3;0.380378!10442-106F1;0.262366!10442-106F1;0.776209!10201-103F3;0.682481!10639-108I9;0.538863!11843-124H7;0.182084!11841-124H5;0.511683!10693-109F9;0.485919!10436-106E4;0.756401!10483-107A6;0.414534!10282-104F3;0.569477!10023-101D5;0.851816!10066-101I3;0.778918!10065-101I2;0.635524!10800-110I8;0.673369!10610-108F7;0.290961!10841-111E4;0.880867!10541-107H1;0.519844!10842-111E5;0.422647!10562-108A4;0.29676!10024-101D6;0.338725!10064-101I1;0.653238!10609-108F6;0.429148!10048-101G3;0.798441!10781-110G7;0.928205!10181-103D1;0.778296!10159-103A6;0.871544!10056-101H2;0.899553!10737-110B8;0.895641!10025-101D7;0.954629!10044-101F8;0.912542!10424-106D1;0.991324!10463-106H4;0.433181!10616-108G4;0.303934!10486-107A9;0.882358!10062-101H8;0.655144!10202-103F4;0.538161!10158-103A5;0.407365!10441-106E9;0.924297!10031-101E4;0.614774!10063-101H9;0.967243!10063-101H9;0.839353!11763-123H8;0.74825!11765-123I1;0.731854!11768-123I4;0.897841!10807-111A6;0.843033!10790-110H7;0.137467!10798-110I6;0.204714!10786-110H3;0.216961!10591-108D6;0.39198!10593-108D8;0.458367!10590-108D5;0.368272!10026-101D8;0.395331!10096-102C6;0.663873!10168-103B6;0.648168!10154-103A1;0.98968!10209-103G2;0.959958!10061-101H7;0.771042!10027-101D9;0.451369!10043-101F7;0.595762!10783-110G9;0.868473!10028-101E1;0.0123747!10060-101H6;0.315489!10203-103F5;0.507661!10059-101H5;0.728619!10047-101G2;0.644852!10029-101E2;0.669491!10058-101H4;0.553146!10418-106C4;0.594165!10492-107B6;0.12463!10694-109G1;0.184226!10797-110I5;0.830575!10057-101H3;0.676607!10100-102D1;0.84314!10055-101H1;0.693772!10204-103F6;0.440973!10191-103E2;0.669556!10563-108A5;0.984633
|name=motif_TCACNG
|name=motif_TCACNG
|tomtom_result=PPARG#MA0066.1;5;0.000749302;0.356668;0.363432;6;TCACAG;GTAGGTCACGGTGACCTACT;+!Gfi#MA0038.1;4;0.00134818;0.641732;0.363432;6;TCACAG;CAAATCACTG;+!usp#MA0016.1;4;0.00152741;0.727049;0.363432;6;TCACAG;GGGGTCACGG;+!Pax2#MA0067.1;2;0.00440283;2.09575;0.838087;6;TCACAG;AGTCACGG;+!ESR1#MA0112.1;5;0.00654067;3.11336;0.999747;6;TCACAG;CCAGGTCACCGTGACCCC;+!ESR2#MA0258.1;5;0.00965798;4.5972;0.999747;6;TCACAG;CAAGGTCACGGTGACCTG;+!RXR::RAR_DR5#MA0159.1;3;0.0106543;5.07145;0.999747;6;TCACAG;AGGTCATGGAGAGGTCA;+!RXRA::VDR#MA0074.1;3;0.0114561;5.4531;0.999747;6;TCACAG;GGGTCAACGAGTTCA;+!ovo#MA0126.1;2;0.0163076;7.76243;0.999747;6;TCACAG;AGTAACAGT;+!prd#MA0239.1;2;0.0163076;7.76243;0.999747;6;TCACAG;AGTAACAGT;+!myb.Ph3#MA0054.1;0;0.0184897;8.80108;0.999747;6;TCACAG;TAACCGTTT;+
}}
}}

Latest revision as of 14:16, 7 September 2012

Full Name: motif_TCACNG

Motif matrix
POACGT
0100024128
0202412800
0324128000
0402412800
056032603260326032
0600241280

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
PPARG#MA0066.150.0007493020.3566680.3634326TCACAGGTAGGTCACGGTGACCTACT+
Gfi#MA0038.140.001348180.6417320.3634326TCACAGCAAATCACTG+
usp#MA0016.140.001527410.7270490.3634326TCACAGGGGGTCACGG+
Pax2#MA0067.120.004402832.095750.8380876TCACAGAGTCACGG+
ESR1#MA0112.150.006540673.113360.9997476TCACAGCCAGGTCACCGTGACCCC+
ESR2#MA0258.150.009657984.59720.9997476TCACAGCAAGGTCACGGTGACCTG+
RXR::RAR_DR5#MA0159.130.01065435.071450.9997476TCACAGAGGTCATGGAGAGGTCA+
RXRA::VDR#MA0074.130.01145615.45310.9997476TCACAGGGGTCAACGAGTTCA+
ovo#MA0126.120.01630767.762430.9997476TCACAGAGTAACAGT+
prd#MA0239.120.01630767.762430.9997476TCACAGAGTAACAGT+
myb.Ph3#MA0054.100.01848978.801080.9997476TCACAGTAACCGTTT+
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