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MacroAPE 1083:5-AWTKGKCGVG: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;200.013;3.509;115.159;0.319!2;100.804;0.319;84.535;133.023!3;0.319;78.474;44.341;195.866!4;56.782;0.319;140.998;120.901!5;0.319;0.319;318.04...")
 
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2537!10828-111C9;0.300517!10788-110H5;0.442556!10792-110H9;0.112082!10765-110E9;0.523243!10829-111D1;0.204984!10830-111D2;0.757106!10831-111D3;0.133889!10832-111D4;0.801374!10833-111D5;0.121325!10764-110E8;0.0642304!10770-110F5;0.12495!10399-106A3;0.178853!10400-106A4;0.120302!10405-106A9;0.0895737!10834-111D6;0.0601817!10835-111D7;0.431526!10836-111D8;0.0622773!10837-111D9;0.107097!10699-109G6;0.0888322!10802-111A1;0.116894!10796-110I4;0.150852!10010-101C1;0.678779!10810-111A9;0.177232!10421-106C7;0.338711!10708-109H6;0.25594!12235-129G3;0.0441577!12236-129G4;0.771318!12237-129G5;0.585721!10167-103B5;0.860236!10151-102I7;0.299122!10428-106D5;0.282671!10795-110I3;0.0935994!10805-111A4;0.362135!10052-101G7;0.546063!10189-103D9;0.189351!10589-108D4;0.266801!10425-106D2;0.437289!10427-106D4;0.0470491!10702-109G9;0.320133!10432-106D9;0.316551!10496-107C1;0.402081!10718-109I7;0.487961!10011-101C2;0.331795!10053-101G8;0.149602!10686-109F2;0.429118!10084-102B3;0.133847!10012-101C3;0.330835!10085-102B4;0.26077!10482-107A5;0.574168!10419-106C5;0.642822!10080-102A8;0.904904!10760-110E4;0.0869332!10709-109H7;0.940218!10710-109H8;0.914024!10703-109H1;0.591687!10719-109I8;0.466527!10642-109A3;0.351392!10177-103C6;0.246141!10164-103B2;0.250111!10173-103C2;0.243271!10166-103B4;0.218157!10083-102B2;0.267201!10188-103D8;0.285239!10552-107I3;0.321828!10553-107I4;0.114809!10013-101C4;0.228905!10536-107G5;0.0966396!10618-108G6;0.117023!10423-106C9;0.889035!10785-110H2;0.575776!12238-129G6;0.89975!12239-129G7;0.440749!12240-129G8;0.499359!10416-106C2;0.193373!10801-110I9;0.125693!10766-110F1;0.478832!10824-111C5;0.206828!10825-111C6;0.37228!10826-111C7;0.420823!10454-106G4;0.43055!10409-106B4;0.465868!10638-108I8;0.12657!10636-108I6;0.338965!10513-107D9;0.502066!10420-106C6;0.957862!10082-102B1;0.361022!10014-101C5;0.225861!10070-101I7;0.0967741!10452-106G2;0.088129!10453-106G3;0.105441!10449-106F8;0.208187!10042-101F6;0.161092!10069-101I6;0.0923295!10193-103E4;0.448074!10631-108I1;0.166175!10438-106E6;0.0602236!10488-107B2;0.585598!10196-103E7;0.734491!10071-101I8;0.0228517!10071-101I8;0.156809!10041-101F5;0.724819!10451-106G1;0.286446!10450-106F9;0.0761451!10604-108F1;0.0833812!10605-108F2;0.577902!10606-108F3;0.766892!10603-108E9;0.828218!10497-107C2;0.922779!10448-106F7;0.658972!10643-109A4;0.827234!10426-106D3;0.830832!10431-106D8;0.462315!10197-103E8;0.153261!10443-106F2;0.165364!10815-111B5;0.214739!10816-111B6;0.109894!10817-111B7;0.063748!10015-101C6;0.133045!10410-106B5;0.0732658!10054-101G9;0.673955!10758-110E2;0.175037!10711-109H9;0.0243212!10040-101F4;0.00414629!10470-106I2;0.366473!10415-106C1;0.974311!10198-103E9;0.943343!10614-108G2;0.0893151!10612-108F9;0.574978!10549-107H9;0.981104!10615-108G3;0.385821!10487-107B1;0.190772!10433-106E1;0.91963!10688-109F4;0.456414!10444-106F3;0.750137!10444-106F3;0.150473!10485-107A8;0.152219!10413-106B8;0.10217!10175-103C4;0.1035!10161-103A8;0.194144!12131-128D7;0.0877361!10624-108H3;0.134353!10712-109I1;0.139334!10205-103F7;0.302902!10206-103F8;0.249508!10207-103F9;0.507396!10050-101G5;0.455154!10051-101G6;0.304908!10016-101C7;0.329343!10046-101G1;0.498265!10778-110G4;0.739041!10633-108I3;0.378049!10818-111B8;0.680077!10819-111B9;0.997128!10820-111C1;0.903956!10484-107A7;0.98903!10808-111A7;0.633133!10169-103B7;0.228032!10153-102I9;0.263567!13425-144D5;0.16109!13433-144E4;0.550412!13437-144E8;0.471473!11904-125F5;0.616093!11905-125F6;0.609474!10039-101F3;0.512192!10791-110H8;0.389976!10017-101C8;0.292187!10045-101F9;0.0963874!10509-107D5;0.312895!10839-111E2;0.978413!10692-109F8;0.604233!10079-102A7;0.0343672!10078-102A6;0.236819!10721-110A1;0.754677!10569-108B2;0.595256!10570-108B3;0.57749!10571-108B4;0.111919!10647-109A8;0.491973!10752-110D5;0.0174409!10782-110G8;0.158602!10726-110A6;0.504934!10018-101C9;0.178746!10086-102B5;0.0545353!10182-103D2;0.10194!10165-103B3;0.111889!10499-107C4;0.0837935!10408-106B3;0.736547!10019-101D1;0.586903!10068-101I5;0.118481!10075-102A3;0.0470147!10077-102A5;0.0462168!10727-110A7;0.580937!10775-110G1;0.536849!10412-106B7;0.20514!12231-129F8;0.525625!12232-129F9;0.780284!12233-129G1;0.240094!12234-129G2;0.488638!10414-106B9;0.593137!10170-103B8;0.803661!10183-103D3;0.326156!10150-102I6;0.326982!10174-103C3;0.181792!10155-103A2;0.0282616!10038-101F2;0.0637629!10838-111E1;0.12085!10759-110E3;0.169302!10514-107E1;0.321281!10465-106H6;0.460706!10691-109F7;0.475816!10843-111E6;0.997813!10844-111E7;0.315365!11747-123G1;0.390274!11748-123G2;0.514023!11749-123G3;0.705173!11750-123G4;0.170248!11751-123G5;0.702476!11840-124H4;0.878402!11752-123G6;0.0994949!11753-123G7;0.104534!11754-123G8;0.113488!11755-123G9;0.280288!11756-123H1;0.885218!11833-124G6;0.508693!11760-123H5;0.349339!11836-124G9;0.587741!11758-123H3;0.2102!11835-124G8;0.223073!11762-123H7;0.376634!11838-124H2;0.236039!11757-123H2;0.174062!11759-123H4;0.797149!11761-123H6;0.738592!11842-124H6;0.393114!11837-124H1;0.60038!10568-108B1;0.433756!13230-141I8;0.0141451!13231-141I9;0.456502!10696-109G3;0.398288!10493-107B7;0.552187!10494-107B8;0.369011!10850-111F4;0.341242!10851-111F5;0.00259726!10852-111F6;0.0371591!10853-111F7;0.022551!10854-111F8;0.00115719!10855-111F9;0.001396!10856-111G1;0.171632!10847-111F1;0.133005!10846-111E9;0.0301387!10848-111F2;0.0315691!10845-111E8;0.133428!10857-111G2;0.0527074!10858-111G3;0.0163499!10156-103A3;0.00128147!11901-125F2;0.177824!11902-125F3;0.606817!11903-125F4;0.55612!10689-109F5;0.247438!10648-109A9;0.00385231!10784-110H1;0.490466!10744-110C6;0.381577!10772-110F7;0.185274!10474-106I6;0.0831715!10600-108E6;0.654933!10684-109E9;0.00702127!12226-129F3;0.0914706!12227-129F4;0.693077!10508-107D4;0.0258046!10539-107G8;0.979746!10607-108F4;0.953443!10555-107I6;0.141945!10774-110F9;0.881391!10637-108I7;0.322911!10663-109C6;0.0581885!10728-110A8;0.113193!10729-110A9;0.0499274!10430-106D7;0.692225!10730-110B1;0.00200454!10813-111B3;0.895407!10812-111B2;0.840015!10037-101F1;0.585136!10172-103C1;0.388993!10163-103B1;0.33896!10076-102A4;0.166374!10073-102A1;0.302891!10036-101E9;0.698578!10195-103E6;0.36526!10277-104E7;0.290695!10434-106E2;0.163424!10550-107I1;0.19243!10545-107H5;0.185099!10544-107H4;0.184373!10704-109H2;0.175828!10510-107D6;0.148022!10558-107I9;0.0989384!10020-101D2;0.190444!10732-110B3;0.147968!10049-101G4;0.00585752!10698-109G5;0.0489191!10437-106E5;0.345362!10417-106C3;0.0444142!10035-101E8;0.720776!10171-103B9;0.346283!10157-103A4;0.299764!10034-101E7;0.188505!10072-101I9;0.27563!10199-103F1;0.711133!10200-103F2;0.0720285!10697-109G4;0.323321!10723-110A3;0.51025!10179-103C8;0.91088!10160-103A7;0.0178573!10180-103C9;0.0136164!10162-103A9;0.273956!10021-101D3;0.0902241!10840-111E3;0.386992!10706-109H4;0.153602!10033-101E6;0.368417!10032-101E5;0.179528!10490-107B4;0.305079!10439-106E7;0.328428!10022-101D4;0.481075!10176-103C5;0.108066!10469-106I1;0.46911!10067-101I4;0.664554!10411-106B6;0.189295!10471-106I3;0.826197!10030-101E3;0.581249!10475-106I7;0.14159!10787-110H4;0.468982!10477-106I9;0.522422!10695-109G2;0.39449!11771-123I7;0.818194!11772-123I8;0.538316!11773-123I9;0.482863!10093-102C3;0.873932!10442-106F1;0.115543!10442-106F1;0.314579!10201-103F3;0.248036!10639-108I9;0.060838!11843-124H7;0.727665!11841-124H5;0.110317!10693-109F9;0.0355762!10436-106E4;0.785855!10483-107A6;0.729157!10282-104F3;0.778242!10023-101D5;0.78071!10066-101I3;0.718197!10065-101I2;0.272076!10800-110I8;0.204471!10610-108F7;0.122901!10841-111E4;0.22792!10541-107H1;0.097866!10842-111E5;0.604767!10562-108A4;0.188741!10024-101D6;0.449179!10064-101I1;0.0575873!10609-108F6;0.089891!10048-101G3;0.514542!10781-110G7;0.154236!10181-103D1;0.420178!10159-103A6;0.104069!10056-101H2;0.102187!10737-110B8;0.263447!10025-101D7;0.432209!10044-101F8;0.305855!10424-106D1;0.398285!10463-106H4;0.165105!10616-108G4;0.973347!10486-107A9;0.386705!10062-101H8;0.40306!10202-103F4;0.145379!10158-103A5;0.290192!10441-106E9;0.0223169!10031-101E4;0.506924!10063-101H9;0.317193!10063-101H9;0.756992!11763-123H8;0.174381!11765-123I1;0.901133!11768-123I4;0.386173!10807-111A6;0.591641!10790-110H7;0.183194!10798-110I6;0.420268!10786-110H3;0.931808!10591-108D6;0.752538!10593-108D8;0.740544!10590-108D5;0.80452!10026-101D8;0.43969!10096-102C6;0.295212!10168-103B6;0.379584!10154-103A1;0.0760256!10209-103G2;0.119609!10061-101H7;0.253323!10027-101D9;0.174328!10043-101F7;0.509883!10783-110G9;0.820772!10028-101E1;0.0399158!10060-101H6;0.00329384!10203-103F5;0.108987!10059-101H5;0.244841!10047-101G2;0.119794!10029-101E2;0.192829!10058-101H4;0.0314982!10418-106C4;0.200047!10492-107B6;0.360136!10694-109G1;0.0719705!10797-110I5;0.101557!10057-101H3;0.459022!10100-102D1;0.675357!10055-101H1;0.0852181!10204-103F6;0.117718!10191-103E2;0.176779!10563-108A5;0.264809
|name=5-AWTKGKCGVG,CNhs13826,BestGuess:TFDP1.p2.SwissRegulon.nucfreq(0.666557766010215),T:319.0(15.23%),B:3397.8(7.34%),P:1e-33
|name=5-AWTKGKCGVG,CNhs13826,BestGuess:TFDP1.p2.SwissRegulon.nucfreq(0.666557766010215),T:319.0(15.23%),B:3397.8(7.34%),P:1e-33
|tomtom_result=HAP3#MA0314.1;4;0.00288797;1.37467;1;10;ATTGGTCGAG;TCTGATTGGTTCAGA;+!btd#MA0443.1;0;0.00355502;1.69219;1;10;ATTGGTCGAG;AGGGGGCGGA;+!NFYA#MA0060.1;6;0.0041703;1.98506;1;10;ATTGGTCGAG;GCGCTGATTGGCTGAG;-!SP1#MA0079.1;-2;0.00648201;3.08544;1;8;ATTGGTCGAG;GGGGCGGGGT;+!Pax4#MA0068.1;5;0.0150893;7.18251;1;10;ATTGGTCGAG;GGGGGGGGAGTGGAGTATTGGAAATTTTTC;-!NFIC#MA0161.1;-2;0.0170926;8.13606;1;6;ATTGGTCGAG;TTGGCA;+!Tal1::Gata1#MA0140.1;-1;0.0197814;9.41597;1;9;ATTGGTCGAG;CTGGTGGGGACAGATAAG;+
}}
}}

Latest revision as of 14:45, 7 September 2012

Full Name: 5-AWTKGKCGVG,CNhs13826,BestGuess:TFDP1.p2.SwissRegulon.nucfreq(0.666557766010215),T:319.0(15.23%),B:3397.8(7.34%),P:1e-33

Motif matrix
POACGT
1200.0133.509115.1590.319
2100.8040.31984.535133.023
30.31978.47444.341195.866
456.7820.319140.998120.901
50.3190.319318.0430.319
656.4630.319123.772138.446
70.319223.93894.4240.319
889.320.319229.0420.319
9111.33170.18105.2732.219
10100.80438.599179.2780.319

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
HAP3#MA0314.140.002887971.37467110ATTGGTCGAGTCTGATTGGTTCAGA+
btd#MA0443.100.003555021.69219110ATTGGTCGAGAGGGGGCGGA+
NFYA#MA0060.160.00417031.98506110ATTGGTCGAGGCGCTGATTGGCTGAG-
SP1#MA0079.1-20.006482013.0854418ATTGGTCGAGGGGGCGGGGT+
Pax4#MA0068.150.01508937.18251110ATTGGTCGAGGGGGGGGGAGTGGAGTATTGGAAATTTTTC-
NFIC#MA0161.1-20.01709268.1360616ATTGGTCGAGTTGGCA+
Tal1::Gata1#MA0140.1-10.01978149.4159719ATTGGTCGAGCTGGTGGGGACAGATAAG+
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