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MacroAPE 1083:CCCACAGACTCAG,motif858: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;4.41;77.13;6.57;1.89!2;4.68;78.84;1.89;4.59!3;1.8;88.02;0.09;0.09!4;78.39;1.89;3.15;6.57!5;3.78;85.5;0.63;0.09!6;79.92;4.41;3.78;1.89!7;4.14...")
 
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842052!10696-109G3;0.84321!10493-107B7;0.755506!10494-107B8;0.0777473!10850-111F4;0.199984!10851-111F5;0.00251544!10852-111F6;0.9103!10853-111F7;0.464533!10854-111F8;0.0342804!10855-111F9;0.474705!10856-111G1;0.961435!10847-111F1;0.633042!10846-111E9;0.654926!10848-111F2;0.477358!10845-111E8;0.440715!10857-111G2;0.61459!10858-111G3;0.178734!10156-103A3;0.0472921!11901-125F2;0.0054341!11902-125F3;0.881301!11903-125F4;0.974257!10689-109F5;0.546751!10648-109A9;0.360479!10784-110H1;0.0570326!10744-110C6;0.141501!10772-110F7;0.042326!10474-106I6;0.0483454!10600-108E6;0.489447!10684-109E9;0.333496!12226-129F3;0.28886!12227-129F4;0.724162!10508-107D4;0.218277!10539-107G8;0.445008!10607-108F4;0.791067!10555-107I6;0.470497!10774-110F9;0.697935!10637-108I7;0.235069!10663-109C6;0.86108!10728-110A8;0.343201!10729-110A9;0.745778!10430-106D7;0.578265!10730-110B1;0.785348!10813-111B3;0.116855!10812-111B2;0.336931!10037-101F1;0.783543!10172-103C1;0.00835217!10163-103B1;0.0133983!10076-102A4;0.0126285!10073-102A1;0.0134006!10036-101E9;0.00321587!10195-103E6;0.012349!10277-104E7;0.00722812!10434-106E2;0.0377286!10550-107I1;0.989146!10545-107H5;0.199393!10544-107H4;0.589011!10704-109H2;0.93535!10510-107D6;0.526479!10558-107I9;0.783703!10020-101D2;0.751011!10732-110B3;0.448004!10049-101G4;0.213479!10698-109G5;0.831307!10437-106E5;0.381751!10417-106C3;0.0938741!10035-101E8;0.392309!10171-103B9;0.00749255!10157-103A4;0.0195252!10034-101E7;0.0106851!10072-101I9;0.00821624!10199-103F1;0.0265532!10200-103F2;0.754457!10697-109G4;0.541562!10723-110A3;0.0236459!10179-103C8;0.717276!10160-103A7;0.0534445!10180-103C9;0.0752272!10162-103A9;0.630681!10021-101D3;0.554683!10840-111E3;0.575613!10706-109H4;0.15325!10033-101E6;0.540382!10032-101E5;0.00696516!10490-107B4;0.00865119!10439-106E7;0.00284373!10022-101D4;0.584152!10176-103C5;0.354718!10469-106I1;0.0555099!10067-101I4;0.102835!10411-106B6;0.277908!10471-106I3;0.775073!10030-101E3;0.279527!10475-106I7;0.0133438!10787-110H4;0.903296!10477-106I9;0.121983!10695-109G2;0.410417!11771-123I7;0.923208!11772-123I8;0.330806!11773-123I9;0.587332!10093-102C3;0.17056!10442-106F1;0.315473!10442-106F1;0.163615!10201-103F3;0.165819!10639-108I9;0.409414!11843-124H7;0.966563!11841-124H5;0.00255512!10693-109F9;0.00165621!10436-106E4;0.041827!10483-107A6;0.396492!10282-104F3;0.483391!10023-101D5;0.839554!10066-101I3;0.883545!10065-101I2;0.836872!10800-110I8;0.130007!10610-108F7;0.0621894!10841-111E4;0.710359!10541-107H1;0.0742438!10842-111E5;0.333985!10562-108A4;0.931456!10024-101D6;0.615074!10064-101I1;0.381552!10609-108F6;0.343171!10048-101G3;0.0551027!10781-110G7;0.334642!10181-103D1;0.728277!10159-103A6;0.115445!10056-101H2;0.0710247!10737-110B8;0.0411658!10025-101D7;0.887901!10044-101F8;0.581849!10424-106D1;0.333899!10463-106H4;0.301853!10616-108G4;0.877661!10486-107A9;0.225545!10062-101H8;0.499326!10202-103F4;0.243843!10158-103A5;0.396696!10441-106E9;0.0722097!10031-101E4;0.955525!10063-101H9;0.0129564!10063-101H9;0.0126446!11763-123H8;0.213362!11765-123I1;0.985971!11768-123I4;0.687371!10807-111A6;0.517915!10790-110H7;0.418893!10798-110I6;0.87675!10786-110H3;0.761333!10591-108D6;0.621332!10593-108D8;0.552049!10590-108D5;0.909143!10026-101D8;0.567912!10096-102C6;0.422642!10168-103B6;0.378761!10154-103A1;0.144175!10209-103G2;0.0118744!10061-101H7;0.257257!10027-101D9;0.231697!10043-101F7;0.244144!10783-110G9;0.131884!10028-101E1;0.340029!10060-101H6;0.928315!10203-103F5;0.86071!10059-101H5;0.329504!10047-101G2;0.432689!10029-101E2;0.0150974!10058-101H4;0.278891!10418-106C4;0.23448!10492-107B6;0.224875!10694-109G1;0.0170379!10797-110I5;0.881092!10057-101H3;0.727912!10100-102D1;0.547093!10055-101H1;0.118291!10204-103F6;0.229282!10191-103E2;0.809825!10563-108A5;0.0943445
|name=CCCACAGACTCAG,motif858,CNhs11672,T:90.0(2.92%),B:567.3(0.70%),P:1e-27
|name=CCCACAGACTCAG,motif858,CNhs11672,T:90.0(2.92%),B:567.3(0.70%),P:1e-27
|tomtom_result=MET28#MA0332.1;-1;2.04601e-05;0.00973902;0.019478;6;CCCACAGACTCAG;CCACAG;-!RUNX1#MA0002.2;2;0.00308539;1.46865;1;9;CCCACAGACTCAG;AAACCACAGAC;-!YGR067C#MA0425.1;2;0.00458307;2.18154;1;12;CCCACAGACTCAG;ACCCCACTTTTTTG;+!YPR022C#MA0436.1;1;0.00597941;2.8462;1;6;CCCACAGACTCAG;CCCCACG;+!MIG3#MA0339.1;1;0.00914943;4.35513;1;6;CCCACAGACTCAG;CCCCGCA;+!ARG80#MA0271.1;-5;0.010534;5.01421;1;6;CCCACAGACTCAG;AGACGC;+!MIG2#MA0338.1;1;0.0114611;5.45547;1;6;CCCACAGACTCAG;CCCCGCA;+!MET4#MA0335.1;-1;0.0128443;6.11388;1;8;CCCACAGACTCAG;CCACAGTT;-!AP1#MA0099.2;-5;0.0155165;7.38585;1;7;CCCACAGACTCAG;TGACTCA;+
}}
}}

Latest revision as of 12:20, 7 September 2012

Full Name: CCCACAGACTCAG,motif858,CNhs11672,T:90.0(2.92%),B:567.3(0.70%),P:1e-27

Motif matrix
POACGT
14.4177.136.571.89
24.6878.841.894.59
31.888.020.090.09
478.391.893.156.57
53.7885.50.630.09
679.924.413.781.89
74.1410.8969.935.04
870.3812.60.096.93
98.3773.711.176.75
106.847.741.1774.25
115.7669.6612.691.89
1271.461.895.6710.98
138.192.5273.625.67

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
MET28#MA0332.1-12.04601e-050.009739020.0194786CCCACAGACTCAGCCACAG-
RUNX1#MA0002.220.003085391.4686519CCCACAGACTCAGAAACCACAGAC-
YGR067C#MA0425.120.004583072.18154112CCCACAGACTCAGACCCCACTTTTTTG+
YPR022C#MA0436.110.005979412.846216CCCACAGACTCAGCCCCACG+
MIG3#MA0339.110.009149434.3551316CCCACAGACTCAGCCCCGCA+
ARG80#MA0271.1-50.0105345.0142116CCCACAGACTCAGAGACGC+
MIG2#MA0338.110.01146115.4554716CCCACAGACTCAGCCCCGCA+
MET4#MA0335.1-10.01284436.1138818CCCACAGACTCAGCCACAGTT-
AP1#MA0099.2-50.01551657.3858517CCCACAGACTCAGTGACTCA+
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