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MCL coexpression mm9:84: Difference between revisions

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{{MCL_coexpression_mm9
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activity;1.55673854052896e-06;18976,12640,14599,14308,16866,19109!GO:0005102;receptor binding;0.000667694344920263;18976,76071,12640,14599,14308,16866,19109!GO:0030141;secretory granule;0.00139708723143257;18976,14599,19109!GO:0040018;positive regulation of multicellular organism growth;0.0265181819214404;18736,14599!GO:0045927;positive regulation of growth;0.0297602743015208;18736,14599!GO:0005126;hematopoietin/interferon-class (D200-domain) cytokine receptor binding;0.0340312509722374;14599,19109!GO:0032962;positive regulation of inositol trisphosphate biosynthetic process;0.0340312509722374;18736!GO:0032958;inositol phosphate biosynthetic process;0.0340312509722374;18736!GO:0032960;regulation of inositol trisphosphate biosynthetic process;0.0340312509722374;18736!GO:0032959;inositol trisphosphate biosynthetic process;0.0340312509722374;18736!GO:0004968;gonadotropin-releasing hormone receptor activity;0.0340312509722374;14715!GO:0016023;cytoplasmic membrane-bound vesicle;0.0340312509722374;18976,14599,19109!GO:0031988;membrane-bound vesicle;0.0340312509722374;18976,14599,19109!GO:0007612;learning;0.0340312509722374;18163,11419!GO:0019717;synaptosome;0.0340312509722374;50791,11419!GO:0040014;regulation of multicellular organism growth;0.0340312509722374;18736,14599!GO:0008283;cell proliferation;0.0340312509722374;18736,14308,26934,19109!GO:0006021;inositol biosynthetic process;0.0340312509722374;18736!GO:0005148;prolactin receptor binding;0.0340312509722374;19109!GO:0043647;inositol phosphate metabolic process;0.0340312509722374;18736!GO:0032957;inositol trisphosphate metabolic process;0.0340312509722374;18736!GO:0005131;growth hormone receptor binding;0.0340312509722374;14599!GO:0060133;somatotropin secreting cell development;0.0340312509722374;18736!GO:0035264;multicellular organism growth;0.0340312509722374;18736,14599!GO:0007611;learning and/or memory;0.0404508747914723;18163,11419!GO:0060126;somatotropin secreting cell differentiation;0.0404508747914723;18736!GO:0007262;STAT protein nuclear translocation;0.0404508747914723;19109!GO:0001101;response to acid;0.0404508747914723;11419!GO:0033143;regulation of steroid hormone receptor signaling pathway;0.0404508747914723;14599!GO:0043567;regulation of insulin-like growth factor receptor signaling pathway;0.0404508747914723;18736!GO:0060011;Sertoli cell proliferation;0.0466662557784434;14308!GO:0045913;positive regulation of carbohydrate metabolic process;0.0466662557784434;18736!GO:0050811;GABA receptor binding;0.0466662557784434;76071!GO:0043255;regulation of carbohydrate biosynthetic process;0.0466662557784434;18736!GO:0031410;cytoplasmic vesicle;0.0466662557784434;18976,14599,19109!GO:0005515;protein 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|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.27974218874167,0,0,0,0,0.186138497248578,0.364812087265261,0.53601771155667,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
|gostat_on_MCL_coexpression=GO:0005179;hormone activity;1.55673854052896e-06;18976,12640,14599,14308,16866,19109!GO:0005102;receptor binding;0.000667694344920263;18976,76071,12640,14599,14308,16866,19109!GO:0030141;secretory granule;0.00139708723143257;18976,14599,19109!GO:0040018;positive regulation of multicellular organism growth;0.0265181819214404;18736,14599!GO:0045927;positive regulation of growth;0.0297602743015208;18736,14599!GO:0005126;hematopoietin/interferon-class (D200-domain) cytokine receptor binding;0.0340312509722374;14599,19109!GO:0032962;positive regulation of inositol trisphosphate biosynthetic process;0.0340312509722374;18736!GO:0032958;inositol phosphate biosynthetic process;0.0340312509722374;18736!GO:0032960;regulation of inositol trisphosphate biosynthetic process;0.0340312509722374;18736!GO:0032959;inositol trisphosphate biosynthetic process;0.0340312509722374;18736!GO:0004968;gonadotropin-releasing hormone receptor activity;0.0340312509722374;14715!GO:0016023;cytoplasmic membrane-bound vesicle;0.0340312509722374;18976,14599,19109!GO:0031988;membrane-bound vesicle;0.0340312509722374;18976,14599,19109!GO:0007612;learning;0.0340312509722374;18163,11419!GO:0019717;synaptosome;0.0340312509722374;50791,11419!GO:0040014;regulation of multicellular organism growth;0.0340312509722374;18736,14599!GO:0008283;cell proliferation;0.0340312509722374;18736,14308,26934,19109!GO:0006021;inositol biosynthetic process;0.0340312509722374;18736!GO:0005148;prolactin receptor binding;0.0340312509722374;19109!GO:0043647;inositol phosphate metabolic process;0.0340312509722374;18736!GO:0032957;inositol trisphosphate metabolic process;0.0340312509722374;18736!GO:0005131;growth hormone receptor binding;0.0340312509722374;14599!GO:0060133;somatotropin secreting cell development;0.0340312509722374;18736!GO:0035264;multicellular organism growth;0.0340312509722374;18736,14599!GO:0007611;learning and/or memory;0.0404508747914723;18163,11419!GO:0060126;somatotropin secreting cell differentiation;0.0404508747914723;18736!GO:0007262;STAT protein nuclear translocation;0.0404508747914723;19109!GO:0001101;response to acid;0.0404508747914723;11419!GO:0033143;regulation of steroid hormone receptor signaling pathway;0.0404508747914723;14599!GO:0043567;regulation of insulin-like growth factor receptor signaling pathway;0.0404508747914723;18736!GO:0060011;Sertoli cell proliferation;0.0466662557784434;14308!GO:0045913;positive regulation of carbohydrate metabolic process;0.0466662557784434;18736!GO:0050811;GABA receptor binding;0.0466662557784434;76071!GO:0043255;regulation of carbohydrate biosynthetic process;0.0466662557784434;18736!GO:0031410;cytoplasmic vesicle;0.0466662557784434;18976,14599,19109!GO:0005515;protein binding;0.0466662557784434;81630,76071,18163,50791,18976,18736,12640,14308,14599,16866,19109,12695!GO:0031982;vesicle;0.0474248118340476;18976,14599,19109!
}}

Latest revision as of 14:39, 17 September 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr10:117549570..117549587,+p@chr10:117549570..117549587
+
Mm9::chr10:12780191..12780206,-p@chr10:12780191..12780206
-
Mm9::chr10:12780231..12780238,-p@chr10:12780231..12780238
-
Mm9::chr10:12780335..12780344,+p12@Plagl1
Mm9::chr10:12780505..12780529,+p10@Plagl1
Mm9::chr10:55944786..55944790,+p@chr10:55944786..55944790
+
Mm9::chr11:106161617..106161686,-p@chr11:106161617..106161686
-
Mm9::chr11:106161619..106161650,+p@chr11:106161619..106161650
+
Mm9::chr11:106161652..106161682,+p@chr11:106161652..106161682
+
Mm9::chr11:106161688..106161710,-p@chr11:106161688..106161710
-
Mm9::chr11:106161701..106161704,+p@chr11:106161701..106161704
+
Mm9::chr11:106161714..106161723,-p@chr11:106161714..106161723
-
Mm9::chr11:106161784..106161839,+p@chr11:106161784..106161839
+
Mm9::chr11:106161787..106161792,-p@chr11:106161787..106161792
-
Mm9::chr11:106161814..106161832,-p@chr11:106161814..106161832
-
Mm9::chr11:106161842..106161880,-p@chr11:106161842..106161880
-
Mm9::chr11:106162089..106162093,+p@chr11:106162089..106162093
+
Mm9::chr11:106162094..106162117,+p@chr11:106162094..106162117
+
Mm9::chr11:106162124..106162125,-p@chr11:106162124..106162125
-
Mm9::chr11:106162129..106162134,-p@chr11:106162129..106162134
-
Mm9::chr11:106162136..106162156,-p@chr11:106162136..106162156
-
Mm9::chr11:106162158..106162204,-p@chr11:106162158..106162204
-
Mm9::chr11:106162161..106162168,+p@chr11:106162161..106162168
+
Mm9::chr11:106162210..106162243,-p@chr11:106162210..106162243
-
Mm9::chr11:106162483..106162501,+p@chr11:106162483..106162501
+
Mm9::chr11:106162491..106162507,-p@chr11:106162491..106162507
-
Mm9::chr11:106162514..106162530,-p@chr11:106162514..106162530
-
Mm9::chr11:106162697..106162723,+p@chr11:106162697..106162723
+
Mm9::chr11:106162749..106162774,-p@chr11:106162749..106162774
-
Mm9::chr11:106162784..106162791,+p@chr11:106162784..106162791
+
Mm9::chr11:106162842..106162853,-p@chr11:106162842..106162853
-
Mm9::chr11:106162861..106162875,-p@chr11:106162861..106162875
-
Mm9::chr11:106163115..106163130,-p1@Gh
Mm9::chr11:22679310..22679315,-p@chr11:22679310..22679315
-
Mm9::chr11:60289788..60289803,+p@chr11:60289788..60289803
+
Mm9::chr11:65874808..65874817,-p@chr11:65874808..65874817
-
Mm9::chr11:77693081..77693097,+p@chr11:77693081..77693097
+
Mm9::chr12:110853720..110853736,-p@chr12:110853720..110853736
-
Mm9::chr12:12857520..12857529,-p@chr12:12857520..12857529
-
Mm9::chr12:30215972..30216008,-p1@uc007ngc.1
Mm9::chr12:32555447..32555451,+p@chr12:32555447..32555451
+
Mm9::chr12:3954943..3954957,+p1@Pomc
Mm9::chr12:59103731..59103754,+p@chr12:59103731..59103754
+
Mm9::chr12:74750260..74750280,+p@chr12:74750260..74750280
+
Mm9::chr13:27149440..27149453,+p1@Prl
Mm9::chr13:27149470..27149480,+p2@Prl
Mm9::chr13:27151251..27151260,+p@chr13:27151251..27151260
+
Mm9::chr13:27151301..27151308,+p@chr13:27151301..27151308
+
Mm9::chr13:27151367..27151376,+p@chr13:27151367..27151376
+
Mm9::chr13:27153396..27153407,+p@chr13:27153396..27153407
+
Mm9::chr13:27156213..27156225,+p@chr13:27156213..27156225
+
Mm9::chr13:27157011..27157017,+p@chr13:27157011..27157017
+
Mm9::chr13:55014587..55014588,+p3@ENSMUST00000154615
Mm9::chr13:55014590..55014601,+p1@ENSMUST00000154615
Mm9::chr13:55014610..55014611,+p4@ENSMUST00000154615
Mm9::chr13:99870653..99870674,+p1@ENSMUST00000099271
p1@uc007rpk.1
Mm9::chr14:37587682..37587687,-p@chr14:37587682..37587687
-
Mm9::chr15:30934527..30934553,+p13@Ctnnd2
Mm9::chr15:73190865..73190881,-p@chr15:73190865..73190881
-
Mm9::chr15:92915843..92915850,-p@chr15:92915843..92915850
-
Mm9::chr15:97600620..97600631,-p@chr15:97600620..97600631
-
Mm9::chr15:97600641..97600663,-p@chr15:97600641..97600663
-
Mm9::chr15:99468218..99468227,-p4@Racgap1
Mm9::chr15:99468236..99468247,-p3@Racgap1
Mm9::chr15:99522649..99522660,+p3@Accn2
Mm9::chr16:23257005..23257026,+p@chr16:23257005..23257026
+
Mm9::chr16:65523906..65523918,+p@chr16:65523906..65523918
+
Mm9::chr16:65534318..65534330,+p@chr16:65534318..65534330
+
Mm9::chr16:65534337..65534346,+p@chr16:65534337..65534346
+
Mm9::chr16:72083353..72083356,+p@chr16:72083353..72083356
+
Mm9::chr16:86358436..86358442,-p@chr16:86358436..86358442
-
Mm9::chr16:9150948..9150952,-p@chr16:9150948..9150952
-
Mm9::chr17:25940337..25940350,+p@chr17:25940337..25940350
+
Mm9::chr17:34056001..34056008,+p22@Tapbp
Mm9::chr17:52742025..52742042,+p5@Kcnh8
Mm9::chr17:52896416..52896418,+p@chr17:52896416..52896418
+
Mm9::chr18:60795823..60795828,+p@chr18:60795823..60795828
+
Mm9::chr18:65857907..65857931,+p1@5330437I02Rik
Mm9::chr19:10478471..10478486,+p@chr19:10478471..10478486
+
Mm9::chr19:53927404..53927413,+p@chr19:53927404..53927413
+
Mm9::chr1:157077259..157077273,-p@chr1:157077259..157077273
-
Mm9::chr1:157077321..157077330,-p@chr1:157077321..157077330
-
Mm9::chr1:160888300..160888311,-p1@Pappa2
Mm9::chr1:160961090..160961100,-p@chr1:160961090..160961100
-
Mm9::chr1:190858662..190858674,+p@chr1:190858662..190858674
+
Mm9::chr1:194660751..194660752,-p1@ENSMUST00000057543
Mm9::chr1:75435802..75435813,+p@chr1:75435802..75435813
+
Mm9::chr1:95114042..95114044,+p@chr1:95114042..95114044
+
Mm9::chr2:106897477..106897480,-p@chr2:106897477..106897480
-
Mm9::chr2:106899136..106899137,-p@chr2:106899136..106899137
-
Mm9::chr2:106899803..106899815,-p1@Fshb
Mm9::chr2:157387211..157387221,+p@chr2:157387211..157387221
+
Mm9::chr2:174675488..174675494,-p@chr2:174675488..174675494
-
Mm9::chr2:174678719..174678724,-p5@ENSMUST00000149377
Mm9::chr2:174678745..174678752,-p3@ENSMUST00000149377
Mm9::chr2:174678782..174678802,-p1@ENSMUST00000149377
Mm9::chr2:174678804..174678811,-p4@ENSMUST00000149377
Mm9::chr2:174678856..174678860,-p2@ENSMUST00000149377
Mm9::chr2:178362498..178362505,-p@chr2:178362498..178362505
-
Mm9::chr2:178362512..178362530,-p@chr2:178362512..178362530
-
Mm9::chr2:30510391..30510400,+p@chr2:30510391..30510400
+
Mm9::chr3:58614474..58614492,-p@chr3:58614474..58614492
-
Mm9::chr3:84841876..84841878,-p@chr3:84841876..84841878
-
Mm9::chr3:95838168..95838175,-p@chr3:95838168..95838175
-
Mm9::chr4:150943126..150943160,-p@chr4:150943126..150943160
-
Mm9::chr4:34840978..34840987,+p3@Cga
Mm9::chr4:34841000..34841008,+p4@Cga
Mm9::chr4:34841021..34841036,+p1@Cga
Mm9::chr4:34841043..34841065,+p2@Cga
Mm9::chr4:34852398..34852407,+p@chr4:34852398..34852407
+
Mm9::chr4:68248939..68248946,+p@chr4:68248939..68248946
+
Mm9::chr4:94143858..94143898,-p1@ENSMUST00000127678
p1@ENSMUST00000133884
p1@uc008trz.1
Mm9::chr4:98103495..98103511,+p12@Inadl
Mm9::chr5:118487983..118487997,+p@chr5:118487983..118487997
+
Mm9::chr5:118488029..118488037,+p@chr5:118488029..118488037
+
Mm9::chr5:129410127..129410141,-p@chr5:129410127..129410141
-
Mm9::chr5:20207947..20208032,+p3@Magi2
Mm9::chr5:37482313..37482324,+p@chr5:37482313..37482324
+
Mm9::chr5:86626872..86626881,-p3@Gnrhr
Mm9::chr5:86626906..86626920,-p1@Gnrhr
Mm9::chr5:86626950..86626960,-p2@Gnrhr
Mm9::chr6:112643587..112643598,-p@chr6:112643587..112643598
-
Mm9::chr7:112717893..112717907,+p@chr7:112717893..112717907
+
Mm9::chr7:136975437..136975441,+p@chr7:136975437..136975441
+
Mm9::chr7:52676276..52676284,+p3@Lhb
Mm9::chr7:52676309..52676316,+p2@Lhb
Mm9::chr7:76005128..76005135,+p@chr7:76005128..76005135
+
Mm9::chr7:86030505..86030537,+p@chr7:86030505..86030537
+
Mm9::chr8:4248188..4248219,+p2@Gm14378
Mm9::chr8:4248223..4248241,+p3@Gm14378
Mm9::chr8:4248248..4248267,+p1@Gm14378
Mm9::chr8:4249457..4249459,+p@chr8:4249457..4249459
+
Mm9::chr8:4250307..4250319,+p4@Gm14378
Mm9::chr8:94583590..94583594,-p@chr8:94583590..94583594
-
Mm9::chr8:9702589..9702592,-p@chr8:9702589..9702592
-
Mm9::chr9:112407509..112407516,+p@chr9:112407509..112407516
+
Mm9::chr9:44754012..44754020,-p@chr9:44754012..44754020
-
Mm9::chr9:50693593..50693603,+p@chr9:50693593..50693603
+
Mm9::chr9:75221009..75221059,-p@chr9:75221009..75221059
-
Mm9::chr9:7556270..7556278,-p@chr9:7556270..7556278
-
Mm9::chr9:7572741..7572752,-p@chr9:7572741..7572752
-
Mm9::chr9:7593439..7593443,-p@chr9:7593439..7593443
-
Mm9::chr9:7604109..7604118,-p@chr9:7604109..7604118
-
Mm9::chr9:7604127..7604130,-p@chr9:7604127..7604130
-
Mm9::chr9:7604145..7604167,-p@chr9:7604145..7604167
-
Mm9::chr9:77247115..77247160,-p1@5730403I07Rik
Mm9::chrX:135891273..135891283,-p4@C330013F16Rik
Mm9::chrX:18796273..18796278,-p@chrX:18796273..18796278
-
Mm9::chrX:47151047..47151077,-p3@Igsf1
Mm9::chrX:54307057..54307085,+p2@Htatsf1
Mm9::chrX:91705113..91705115,-p@chrX:91705113..91705115
-


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data




Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>



TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs