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MCL coexpression mm9:521: Difference between revisions

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{{MCL_coexpression_mm9
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|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0.521714096727278,0.281903928295643,0.336524299153945,0.180026585552633,0.13302423876103,0.572324370384561,0.574435052272598,0.173299063763561,0.243265616345278,0.230336981122899,0.601722258066599,0.443227989990359,0.557487621874145,0.0518325320548473,0.386529021119801,0.362859104398798,0.192545433353818,0.164001280677683,0,0,0,0,0,0,0,0,0,0,0,0,0.231463115330516,0.12537284254095,0.311127917657318,0.31246972142486,0.300063645597247,0.17187568289743,0,0,0,0,0,0,0,0,0,0.768141779040441,0.236880264493592,0.638286286219226,0,0,0,0,0,0,0,0,0.051854832910894,0,0.058667567573031,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0133213632053863,0,0,0,0,0,0,0,0,0,0,0.0949849528117041,0.994087310087334,0.112901225419538,0,0,0,0,0.02414100236309,0,0,0.0787490855569153,0.281560133626786,0.121735003810417,0.436361346884353,0.342198254133332,0,0,0,0,0.405194867041894,0.204093579732844,0.316252578693269,0,0,0,0,0,0,0,0.0179810822905493,0.257096405825256,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0118127636934223,0,0.231013950740173,0.200690656830667,0.298745094384411,0,0,0,0,0,0.00050109595078853,0,0,0,0,0.00418606969994352,0.0338533374824575,0,0.158091042771083,0.0546921007390138,0,0,0.0951667085957819,0,0,0,0,0,0,0,0,0,0,0.0542503240597447,0.00985576762914535,0.05575358829338,0.0136697792587685,0.0350941026674727,0,0,0,0,0,0,0,0,0,0,0,0.0670132089181356,0.0389670579605192,0.0958646395197134,0.0401075634450079,0.0745014518674771,0.0519248470249796,0.0260850374260253,0.194618542283541,0.10536076625968,0.481576854564092,0.068699362409361,0.164276239518825,0.0798021051225793,0,0,0.297426820115563,0,0,0,0,0.00480794938718877,0,0.0774164737207147,0.190253237365079,0.159245076116426,0.144998238511638,0.239412599485906,0.30246186047463,0.17335022465969,0.648186599051306,0.749474909162881,0.173700201812769,0.052914572532805,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0141515942188415,0,0,0.091643311800661,0,0,0,0,0,0,0,0,0.00831803210892295,0.119268019631849,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0431832938799762,0.0650059127791652,0.0254340553719351,0,0,0.111087966368681,0,0.347613217181428,0.0814866010703366,0.262696764678728,0.394185162000665,0.592150367398116,0.353219918604735,0.557475796322164,0.501600250094164,0.457104378282297,0,0,0,0,0,0,0,0.0954261004523383,0,0.0264652202067783,0.104936956647056,0,0,0,0,0,0,0,0,0,0,0,0.752919083037112,0.0400832080528911,0.208512768087948,0.407518329033116,0.351421998736124,0.585343683245414,0.5898381627466,0.642897411339904,0.759053613404993,0.7084374571286,0.822377754150397,0.829180707589866,0.836094484081445,0.880603937569707,0,0,0,0,0,0.134658013974695,0.158301860697413,0.0555287910394446,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0388749848471105,0.0153210518812713,0.01782584697684,0,0.0322037123804809,0,0,0,0.00612541768613335,0.0684735190450257,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0624694302061862,0.0422650922646472,0,0,0.0905641158318875
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=CL:0000988!1.40e-13!32;CL:0002032!1.40e-13!32;CL:0000037!1.40e-13!32;CL:0000566!1.40e-13!32;CL:0000837!1.40e-13!32;CL:0002031!9.24e-11!25;CL:0000838!1.08e-09!12;CL:0000084!8.89e-09!11;CL:0000827!8.89e-09!11;CL:0000542!1.33e-08!13;CL:0000051!1.33e-08!13;CL:0000738!1.72e-08!17;CL:0002087!1.72e-08!17;CL:0002320!8.73e-08!46;CL:0000134!8.73e-08!46;CL:0000791!2.27e-07!9;CL:0000789!2.27e-07!9;CL:0002420!2.27e-07!9;CL:0002419!2.27e-07!9;CL:0000790!2.27e-07!9
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0002193!1.03e-24!48;UBERON:0002405!1.03e-24!48;UBERON:0002390!1.27e-22!45;UBERON:0003061!1.27e-22!45;UBERON:0004177!5.75e-17!29;UBERON:0005057!5.75e-17!29;UBERON:0003408!2.10e-13!24;UBERON:0000077!3.63e-13!35;UBERON:0002370!4.90e-13!23;UBERON:0000974!4.90e-13!23;UBERON:0004807!4.90e-13!23;UBERON:0005058!4.90e-13!23;UBERON:0003351!4.90e-13!23;UBERON:0009113!4.90e-13!23;UBERON:0003295!4.90e-13!23;UBERON:0009722!4.90e-13!23;UBERON:0005562!4.90e-13!23;UBERON:0007690!4.90e-13!23;UBERON:0001041!2.02e-12!80;UBERON:0003081!3.70e-12!87;UBERON:0006562!3.78e-12!24;UBERON:0001557!3.78e-12!24;UBERON:0001042!3.78e-12!24;UBERON:0008814!3.78e-12!24;UBERON:0009145!3.78e-12!24;UBERON:0001004!2.54e-11!42;UBERON:0000065!6.05e-11!41;UBERON:0000072!6.49e-10!27;UBERON:0005911!3.40e-09!69;UBERON:0000926!4.28e-09!120;UBERON:0004120!4.28e-09!120;UBERON:0006603!4.28e-09!120;UBERON:0001007!5.50e-08!116;UBERON:0001555!5.50e-08!116;UBERON:0007026!5.50e-08!116;UBERON:0002384!8.73e-08!46;UBERON:0004119!1.44e-07!118;UBERON:0000925!1.44e-07!118;UBERON:0006595!1.44e-07!118;UBERON:0001474!1.63e-07!22;UBERON:0004765!1.63e-07!22;UBERON:0001434!1.63e-07!22;UBERON:0003929!1.64e-07!55;UBERON:0002530!2.00e-07!65;UBERON:0004921!2.51e-07!114;UBERON:0002368!4.24e-07!60
}}

Latest revision as of 15:26, 17 September 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr10:79480687..79480698,+p@chr10:79480687..79480698
+
Mm9::chr11:95696659..95696666,-p@chr11:95696659..95696666
-
Mm9::chr3:60277020..60277050,+p4@Mbnl1
Mm9::chr4:130488048..130488059,+p@chr4:130488048..130488059
+
Mm9::chr4:130488076..130488092,+p@chr4:130488076..130488092
+
Mm9::chr4:130488289..130488306,+p@chr4:130488289..130488306
+
Mm9::chr4:130488310..130488325,+p@chr4:130488310..130488325
+
Mm9::chr4:130488373..130488470,+p@chr4:130488373..130488470
+
Mm9::chr4:130488471..130488527,+p@chr4:130488471..130488527
+
Mm9::chr4:130488532..130488559,+p@chr4:130488532..130488559
+
Mm9::chr5:86518390..86518393,+p@chr5:86518390..86518393
+
Mm9::chr5:86522288..86522304,+p@chr5:86522288..86522304
+
Mm9::chr6:47586890..47586913,-p@chr6:47586890..47586913
-
Mm9::chr9:57493339..57493348,-p4@Csk


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
hemolymphoid system1.03e-2448
immune system1.03e-2448
hematopoietic system1.27e-2245
blood island1.27e-2245
hemopoietic organ5.75e-1729
immune organ5.75e-1729
gland of gut2.10e-1324
mixed endoderm/mesoderm-derived structure3.63e-1335
thymus4.90e-1323
neck4.90e-1323
respiratory system epithelium4.90e-1323
hemolymphoid system gland4.90e-1323
pharyngeal epithelium4.90e-1323
thymic region4.90e-1323
pharyngeal gland4.90e-1323
entire pharyngeal arch endoderm4.90e-1323
thymus primordium4.90e-1323
early pharyngeal endoderm4.90e-1323
foregut2.02e-1280
lateral plate mesoderm3.70e-1287
pharynx3.78e-1224
upper respiratory tract3.78e-1224
chordate pharynx3.78e-1224
pharyngeal arch system3.78e-1224
pharyngeal region of foregut3.78e-1224
respiratory system2.54e-1142
respiratory tract6.05e-1141
segment of respiratory tract6.49e-1027
endo-epithelium3.40e-0969
mesoderm4.28e-09120
mesoderm-derived structure4.28e-09120
presumptive mesoderm4.28e-09120
digestive system5.50e-08116
digestive tract5.50e-08116
primitive gut5.50e-08116
connective tissue8.73e-0846
endoderm-derived structure1.44e-07118
endoderm1.44e-07118
presumptive endoderm1.44e-07118
bone element1.63e-0722
skeletal element1.63e-0722
skeletal system1.63e-0722
gut epithelium1.64e-0755
gland2.00e-0765
subdivision of digestive tract2.51e-07114
endocrine gland4.24e-0760


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.10.0263311
MA0004.10.258473
MA0006.10.1319
MA0007.10.689082
MA0009.10.649874
MA0014.10.00638392
MA0017.10.458117
MA0019.10.480432
MA0024.10.608636
MA0025.10.873493
MA0027.12.275
MA0028.10.138956
MA0029.10.588275
MA0030.10.594419
MA0031.10.561217
MA0038.10.381016
MA0040.10.661716
MA0041.10.198922
MA0042.10.189008
MA0043.10.74191
MA0046.10.683926
MA0048.10.121113
MA0050.10.290354
MA0051.10.388883
MA0052.11.60625
MA0055.10.00347439
MA0056.10
MA0057.10.261486
MA0058.10.183941
MA0059.10.19314
MA0060.10.0819399
MA0061.10.671982
MA0063.10
MA0066.10.371389
MA0067.10.981551
MA0068.10.271058
MA0069.10.669676
MA0070.15.20837
MA0071.10.289658
MA0072.10.652465
MA0073.14.33476
MA0074.10.340281
MA0076.10.163664
MA0077.10.632005
MA0078.11.07325
MA0081.10.605506
MA0083.10.741151
MA0084.11.30392
MA0087.11.67
MA0088.10.0649199
MA0089.10
MA0090.10.231074
MA0091.10.269175
MA0092.10.231323
MA0093.10.144649
MA0095.10
MA0098.10
MA0100.10.330364
MA0101.10.199903
MA0103.10.157724
MA0105.10.684733
MA0106.10.425111
MA0107.10.46624
MA0108.20.50131
MA0109.10
MA0111.10.242308
MA0113.10.400008
MA0114.10.323836
MA0115.10.744589
MA0116.10.131762
MA0117.10.713754
MA0119.10.200349
MA0122.10.732707
MA0124.10.929684
MA0125.10.857794
MA0130.10
MA0131.10.476296
MA0132.10
MA0133.10
MA0135.10.77683
MA0136.10.357464
MA0139.10.0649474
MA0140.10.330266
MA0141.10.985967
MA0142.10.547747
MA0143.10.414534
MA0144.10.328866
MA0145.10.189432
MA0146.10.00972339
MA0147.10.107632
MA0148.10.271704
MA0149.10.204102
MA0062.20.177386
MA0035.20.33429
MA0039.20.00306976
MA0138.20.469076
MA0002.20.0664561
MA0137.20.169785
MA0104.20.0740839
MA0047.20.990617
MA0112.20.918188
MA0065.20.190247
MA0150.10.246295
MA0151.10
MA0152.11.7573
MA0153.10.792819
MA0154.10.283993
MA0155.11.40458
MA0156.10.163042
MA0157.10.518122
MA0158.10
MA0159.10.114033
MA0160.10.274172
MA0161.10
MA0162.10.21028
MA0163.10.0112325
MA0164.10.357779
MA0080.20.912084
MA0018.20.366212
MA0099.20.463355
MA0079.20.00214241
MA0102.21.35579
MA0258.11.04836
MA0259.10.101001
MA0442.10
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