FFCP PHASE1:Hg19::chr3:149530431..149530453,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr3:149530431..149530453,+
|short_description=p6@RNF13
|description=CAGE_peak_6_at_RNF13_5end
|association_with_transcript=-21bp_to_NM_007282,NM_183381,uc003ex...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=11342 | |EntrezGene=11342 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10057 | |HGNC=10057 | ||
|TSSclassifier=strong | |||
|UniProt=O43567 | |UniProt=O43567 | ||
|association_with_transcript=-21bp_to_NM_007282,NM_183381,uc003exn.3,uc003exp.3_5end | |||
|cluster_id=chr3:149530431..149530453,+ | |||
|description=CAGE_peak_6_at_RNF13_5end | |||
|id=chr3:149530431..149530453,+ | |||
|ontology_enrichment_celltype=CL:0002194!1.95e-21!63;CL:0000576!1.95e-21!63;CL:0000040!1.95e-21!63;CL:0000559!1.95e-21!63;CL:0002009!1.06e-20!65;CL:0000557!6.78e-19!71;CL:0000839!7.84e-19!70;CL:0000766!8.56e-19!76;CL:0000860!1.45e-18!45;CL:0002057!2.34e-18!42;CL:0002087!5.83e-13!119;CL:0002031!1.57e-11!124;CL:0000738!1.72e-11!140;CL:0000763!2.81e-09!112;CL:0000049!2.81e-09!112;CL:0002032!3.67e-07!165;CL:0000837!3.67e-07!165 | |||
|ontology_enrichment_celltype_v019=CL:0000860;6.10e-59;33!CL:0002057;6.10e-59;33!CL:0000473;9.07e-55;39!CL:0000234;9.07e-55;39!CL:0000576;9.09e-38;48!CL:0000766;1.28e-25;69!CL:0002619;8.43e-13;3!CL:0002087;6.31e-12;104!CL:0000763;1.25e-11;100!CL:0000235;1.31e-10;6!CL:0000738;3.21e-08;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,4.70e-63,48;CL:0000234,4.70e-63,48;CL:0002194,1.24e-60,59;CL:0000576,1.24e-60,59;CL:0000040,1.24e-60,59;CL:0000559,1.24e-60,59;CL:0002009,2.10e-58,61;CL:0000860,9.38e-54,42;CL:0002057,9.38e-54,42;CL:0000839,2.06e-53,66;CL:0000557,1.67e-52,67;CL:0000766,1.83e-51,72;CL:0002087,3.23e-33,115;CL:0000763,1.27e-31,108;CL:0000049,1.27e-31,108;CL:0002031,1.78e-31,120;CL:0000738,1.65e-28,136;CL:0002032,1.04e-22,161;CL:0000837,1.04e-22,161;CL:0000037,2.14e-21,168;CL:0000988,7.36e-20,177;CL:0002619,8.16e-13,3;CL:0000235,1.83e-10,6;CL:0000134,3.44e-10,354;CL:0002320,8.42e-10,361;CL:0000219,4.17e-09,386;CL:0000048,8.86e-07,427 | |||
|ontology_enrichment_development_v019=CL:0002057;3.72e-40;42!CL:0000049;7.41e-10;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004765!2.12e-17!101;UBERON:0001434!2.12e-17!101;UBERON:0001474!7.87e-16!86;UBERON:0002371!8.45e-16!80;UBERON:0002390!3.62e-14!102;UBERON:0003061!3.62e-14!102;UBERON:0002193!6.65e-12!112;UBERON:0002405!5.49e-10!115 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.75e-51,76;UBERON:0001474,4.01e-47,82;UBERON:0004765,3.32e-42,90;UBERON:0002405,1.41e-40,93;UBERON:0002390,4.40e-38,98;UBERON:0003061,4.40e-38,98;UBERON:0001434,3.73e-37,100;UBERON:0002193,8.79e-34,108;UBERON:0002204,7.26e-19,167;UBERON:0003081,4.54e-15,203;UBERON:0002384,2.85e-09,371;UBERON:0000926,9.48e-09,315;UBERON:0004120,9.48e-09,315;UBERON:0006603,9.48e-09,315 | |||
|phase1_expression=0,0.214100523890983,0.281908808191942,1.0007329835313,0,0.872338524100369,0,0.631719873426831,0.783556884599516,0,0,0,0,0.123766352960047,0.662794751455832,0,0,0,0,0,0,0,0,0,0.251085279189606,0.61130724598361,0.656804715599566,0.393553906568396,0.786728553697808,0.383829398097213,0.154816123316076,0,0,0,0,0.284338464974843,0,1.10799081706375,0.200544447470142,0,4.92614043327834,5.50619232232265,5.15151135268373,0.872389432677388,0.377875943688809,0.727752183563449,3.25400651667958,2.87817521615278,4.33588919253145,2.58923153089935,3.07392847834921,3.54723344832878,3.44745680736619,2.5819387343353,2.70852973188684,1.31769637679823,1.63743690034707,1.12361742222542,1.53041946185451,3.85114832491312,4.47535988059329,0.659702600373432,1.79517291859469,0.426224750532694,2.90209238628584,1.70215567407342,1.86846674698672,2.76373531782418,2.60741459210101,5.2125322729228,1.81619850790011,2.20966581592539,1.58231193720442,0,0.212604299965044,0.209658645508376,0.112328631146495,0.300353785683013,0.48217676009124,0,0.19891667719909,0.91332076882317,0,0,0.889509253863555,1.70692089026603,0.800791974072025,0,0,0,1.1384259382189,0.587237189370939,0,0,0,0.263384084775077,0,0,0,0,0,0,0,0.111410456885174,0,0.443067789167242,0,0.128091319725675,0,0,0,0,0.14828656316206,0,0,0.113309342697566,0,0,0,0,0,0,0.150575119077773,0,0,0,0,0.201606743224732,0,0.289648807765598,0,0,0.12786256184353,0.722878304769133,0.50133791063589,0.434539556882471,0,0,0.283604451492204,0.221729397462564,0.263504357079378,0.327447688744282,0.364295288292542,0,0.324547393654683,0.348259474598534,0.797747763113191,0.715471872916026,0,0.371457501329565,0,0,0,0,0,0,0,0,0,0.66944122552934,0,0,0.24406205754817,0,0,0,0,0.337834441449967,0,0,0,0,0,0,0.496971951695318,0,0.529636723252875,0.573673241497627,0.354668382198357,0,0,0.74000264525148,0,0,0.163461903113459,0.151357427644931,0,0,0.312160076830321,0,0,0,0,0.421352420106746,0,0.122834317311768,0.206651562351531,0,0,0,0,0,0.125118519871964,0.277064115484183,0.438977620880838,0,0.45071417671979,0.226864366320042,0,0.213557388818567,0,0,0.103052529238439,0.257640540045629,0.18611685633159,0,0.194874010322397,0.252433774244115,0.184099797284599,0.161646056818812,0,0.403008392910561,0,0.57978255948989,0.818238361772504,0.573609190778008,0,0.132529768321485,0.116193942869518,0,0.252320850875628,0.36497735907583,0,0,0,0,0,0.236613600079688,0.337169380156203,0.241011029883482,0.55146986366197,0.435758888184812,0.237270619111097,0.404493924480493,0.196221465125346,0.769494313892781,0,0,0,0,0,0,1.77236972004421,0,0.122988438543114,0.171567810298526,0.109750285408626,0,0.402115889646523,0,0,0,0,0.231860809950154,0.234817388471643,0.288732895522148,0,0,0,0,3.44703808522356,0.936017060556951,1.0404181360211,0.93733833986777,0.839910640994298,0.567100388969546,0.447792613514241,0,0,0,0.088048434013226,0.621984346622316,0,0.25248486685276,0.190493682876507,0.381988425558278,1.17217447210047,0,0,0,0.285826432630578,0.224262168690721,0,0.07333828582095,0.387815147273333,0,0,0,1.04007436911366,0,0,0,0,0,0,0,0,0,0.301439377059586,0.871533458600294,0.199945982364114,0,9.5428847372104,6.32501818449095,0.239624855491583,0,0,0.579125226670317,0.410952645100767,0.716243852959582,0.224170287987055,0,0.215627574859517,0,0.254094624222463,0,0,0.167516265334349,0,0,0,1.24324654030811,0,0,0.271265023699736,0,0.356857977594324,0,0.117141414992713,0,0,0,0.664225598535437,0,0.173767228936166,0,0,0.206768026122887,0,0.213455115606889,0.303127571446259,0,0,0.248107807818777,0.153461973288062,0.280660094433074,0,1.53512174720011,0,0,0.308419387605311,0.177561725313127,0.164254312027618,0,0,0.241718899183244,0.802025881213139,0.368323955743585,0.229628896329213,0,0.131124414959424,0,0.0770153371044148,0,0,0.211103257785751,0,0,0.215915916102139,0,0,0.501689773854853,0,0,0,0,0,1.28225062558195,0.328014645699706,0.650756789328606,0.103041011647722,0.732555718546747,0.41254749960294,0,0,0,0,0,0.15350367472613,0.137836572484531,0.214840489736547,0.145016693914229,0,0.178064071293475,0.165284915360978,0.576570202095319,0.893288987462089,0.10115778085555,0,0.62962469366128,0,0,0,0.869932992075073,0,0,0,0,0,0,0.42793898803392,0,0,0,0,0.117812402345686,0,0,0,0.48763373908959,0.731140468893853,0,0.682499557039929,0,0,0,0,0,0,0,0,0,0,0.143411352204052,0.196498082026242,0,0,0.211107635297664,0.329294892959902,0,0,0.0962221127255121,0,0,0.470719003883896,0,1.68471475667626,0,0,0.507447609232169,0.764637207142375,0,0,0.411362273086194,0,0,0,1.38871292465715,0,0,0.743212700502875,0.144269212976445,0.213425530045242,0,0.199579371432817,0.191505370132367,0.211673582723883,0,0,0,0,0,0.169291777801603,0.1605880751037,0.201799707191048,0,0,0.307240764308458,0.223676107892416,0,0.19538809540204,0,0,0.270455678475983,0,0,0.37428108081644,0.293016358543788,0,0.111443384277478,0,0,0,0.307160702099232,0,0.140669416410513,0.111308705022906,0.16480387422676,0.211125408127993,0,0,0.755798243562828,0.511343412510774,0.123084805461069,0,0.4493417557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| ||
|short_description=p6@RNF13 | |||
}} | }} |
Latest revision as of 22:21, 15 September 2015
Short description: | p6@RNF13 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_RNF13_5end |
Coexpression cluster: | NA |
Association with transcript: | -21bp_to_NM_007282, NM_183381, uc003exn.3, uc003exp.3_5end |
EntrezGene: | RNF13 |
HGNC: | 10057 |
UniProt: | O43567 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 4.70e-63 | 48 |
phagocyte | 4.70e-63 | 48 |
monopoietic cell | 1.24e-60 | 59 |
monocyte | 1.24e-60 | 59 |
monoblast | 1.24e-60 | 59 |
promonocyte | 1.24e-60 | 59 |
macrophage dendritic cell progenitor | 2.10e-58 | 61 |
classical monocyte | 9.38e-54 | 42 |
CD14-positive, CD16-negative classical monocyte | 9.38e-54 | 42 |
myeloid lineage restricted progenitor cell | 2.06e-53 | 66 |
granulocyte monocyte progenitor cell | 1.67e-52 | 67 |
myeloid leukocyte | 1.83e-51 | 72 |
nongranular leukocyte | 3.23e-33 | 115 |
myeloid cell | 1.27e-31 | 108 |
common myeloid progenitor | 1.27e-31 | 108 |
hematopoietic lineage restricted progenitor cell | 1.78e-31 | 120 |
leukocyte | 1.65e-28 | 136 |
hematopoietic oligopotent progenitor cell | 1.04e-22 | 161 |
hematopoietic multipotent progenitor cell | 1.04e-22 | 161 |
hematopoietic stem cell | 2.14e-21 | 168 |
hematopoietic cell | 7.36e-20 | 177 |
adult endothelial progenitor cell | 8.16e-13 | 3 |
macrophage | 1.83e-10 | 6 |
mesenchymal cell | 3.44e-10 | 354 |
connective tissue cell | 8.42e-10 | 361 |
motile cell | 4.17e-09 | 386 |
multi fate stem cell | 8.86e-07 | 427 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.75e-51 | 76 |
bone element | 4.01e-47 | 82 |
skeletal element | 3.32e-42 | 90 |
immune system | 1.41e-40 | 93 |
hematopoietic system | 4.40e-38 | 98 |
blood island | 4.40e-38 | 98 |
skeletal system | 3.73e-37 | 100 |
hemolymphoid system | 8.79e-34 | 108 |
musculoskeletal system | 7.26e-19 | 167 |
lateral plate mesoderm | 4.54e-15 | 203 |
connective tissue | 2.85e-09 | 371 |
mesoderm | 9.48e-09 | 315 |
mesoderm-derived structure | 9.48e-09 | 315 |
presumptive mesoderm | 9.48e-09 | 315 |