FFCP PHASE1:Hg19::chr3:18480105..18480108,-: Difference between revisions
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(Created page with "{{FFCP
|id=chr3:18480105..18480108,-
|short_description=p48@SATB1
|description=CAGE_peak_48_at_SATB1_5end
|association_with_transcript=75bp_to_ENST00000414509_5end
|Entre...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6304 | |EntrezGene=6304 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10541 | |HGNC=10541 | ||
|TSSclassifier=strong | |||
|UniProt=C9JLL5 | |UniProt=C9JLL5 | ||
|association_with_transcript=75bp_to_ENST00000414509_5end | |||
|cluster_id=chr3:18480105..18480108,- | |||
|coexpression_cluster_id=C712 | |||
|description=CAGE_peak_48_at_SATB1_5end | |||
|id=chr3:18480105..18480108,- | |||
|ontology_enrichment_celltype=CL:0000084!1.93e-13!25;CL:0000827!1.93e-13!25;CL:0000791!2.92e-12!18;CL:0000789!2.92e-12!18;CL:0002420!2.92e-12!18;CL:0002419!2.92e-12!18;CL:0000790!2.92e-12!18;CL:0000623!4.54e-12!3;CL:0000825!4.54e-12!3;CL:0000842!1.99e-11!3;CL:0000838!4.50e-11!52;CL:0000542!8.36e-11!53;CL:0000051!8.36e-11!53;CL:0000224!1.11e-08!4;CL:0002087!1.13e-08!119;CL:0000625!2.06e-08!11;CL:0000738!1.68e-07!140 | |||
|ontology_enrichment_celltype_v019=CL:0000815;9.07e-18;2!CL:0000792;9.07e-18;2!CL:0002677;9.07e-18;2!CL:0000898;2.59e-12;3!CL:0000624;8.48e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000815,6.48e-18,2;CL:0000792,6.48e-18,2;CL:0002677,6.48e-18,2;CL:0000898,2.07e-12,3;CL:0000624,7.58e-07,6 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001950!5.01e-12!20;UBERON:0002619!7.63e-11!22;UBERON:0001869!9.50e-11!32;UBERON:0001893!5.19e-10!34;UBERON:0000200!1.06e-09!6;UBERON:0002370!1.16e-09!4;UBERON:0005058!1.16e-09!4;UBERON:0009113!1.16e-09!4;UBERON:0003295!1.16e-09!4;UBERON:0005562!1.16e-09!4;UBERON:0000956!2.06e-09!25;UBERON:0000203!2.06e-09!25;UBERON:0002791!1.86e-08!33;UBERON:0002020!3.65e-08!34;UBERON:0003528!3.65e-08!34;UBERON:0002780!5.46e-08!41;UBERON:0001890!5.46e-08!41;UBERON:0006240!5.46e-08!41;UBERON:0003080!9.36e-08!42 | |||
|ontology_enrichment_uberon_v019=UBERON:0002370;3.96e-66;2!UBERON:0005058;3.96e-66;2!UBERON:0009113;3.96e-66;2!UBERON:0004177;3.11e-27;5!UBERON:0005057;3.11e-27;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,8.36e-34,4;UBERON:0005058,8.36e-34,4;UBERON:0009113,8.36e-34,4;UBERON:0003295,8.36e-34,4;UBERON:0005562,8.36e-34,4;UBERON:0003351,6.07e-23,6;UBERON:0004177,7.84e-20,7;UBERON:0005057,7.84e-20,7;UBERON:0000974,3.25e-14,10;UBERON:0003408,3.25e-14,10;UBERON:0001042,3.25e-14,10;UBERON:0009145,3.25e-14,10;UBERON:0006562,5.10e-13,11;UBERON:0009722,5.10e-13,11;UBERON:0007690,5.10e-13,11;UBERON:0008814,2.42e-08,18;UBERON:0001557,5.94e-08,19 | |||
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| ||
|short_description=p48@SATB1 | |||
}} | }} |
Latest revision as of 03:09, 17 September 2015
Short description: | p48@SATB1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_48_at_SATB1_5end |
Coexpression cluster: | C712_thymus_biphenotypic_CD4_non_granulocyte_merkel_acute |
Association with transcript: | 75bp_to_ENST00000414509_5end |
EntrezGene: | SATB1 |
HGNC: | 10541 |
UniProt: | C9JLL5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
regulatory T cell | 6.48e-18 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 6.48e-18 | 2 |
naive regulatory T cell | 6.48e-18 | 2 |
naive T cell | 2.07e-12 | 3 |
CD4-positive, alpha-beta T cell | 7.58e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
thymus | 8.36e-34 | 4 |
hemolymphoid system gland | 8.36e-34 | 4 |
thymic region | 8.36e-34 | 4 |
pharyngeal gland | 8.36e-34 | 4 |
thymus primordium | 8.36e-34 | 4 |
pharyngeal epithelium | 6.07e-23 | 6 |
hemopoietic organ | 7.84e-20 | 7 |
immune organ | 7.84e-20 | 7 |
neck | 3.25e-14 | 10 |
gland of gut | 3.25e-14 | 10 |
chordate pharynx | 3.25e-14 | 10 |
pharyngeal region of foregut | 3.25e-14 | 10 |
pharynx | 5.10e-13 | 11 |
entire pharyngeal arch endoderm | 5.10e-13 | 11 |
early pharyngeal endoderm | 5.10e-13 | 11 |
pharyngeal arch system | 2.42e-08 | 18 |
upper respiratory tract | 5.94e-08 | 19 |