FFCP PHASE1:Hg19::chr3:58200221..58200232,-: Difference between revisions
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|id=chr3:58200221..58200232,-
|short_description=p12@DNASE1L3
|description=CAGE_peak_12_at_DNASE1L3_5end
|association_with_transcript=165bp_to_ENST00000318316,ENST0...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=1776 | |EntrezGene=1776 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2959 | |HGNC=2959 | ||
|TSSclassifier=strong | |||
|UniProt=Q13609,C9J0L2 | |UniProt=Q13609,C9J0L2 | ||
|association_with_transcript=165bp_to_ENST00000318316,ENST00000460422,NM_004944,uc003djp.1_5end | |||
|cluster_id=chr3:58200221..58200232,- | |||
|coexpression_cluster_id=C74 | |||
|description=CAGE_peak_12_at_DNASE1L3_5end | |||
|id=chr3:58200221..58200232,- | |||
|ontology_enrichment_celltype=CL:0000840!7.90e-22!5;CL:0001029!7.90e-22!5;CL:0000451!8.68e-17!10;CL:0002150!4.46e-15!3;CL:0000861!4.46e-15!3;CL:0000990!1.78e-14!8;CL:0002031!3.32e-13!124;CL:0000738!1.51e-12!140;CL:0002087!1.80e-12!119;CL:0000235!4.93e-12!10;CL:0002009!7.08e-12!65;CL:0000557!1.21e-10!71;CL:0002194!1.55e-10!63;CL:0000576!1.55e-10!63;CL:0000040!1.55e-10!63;CL:0000559!1.55e-10!63;CL:0000945!7.02e-10!24;CL:0000826!7.02e-10!24;CL:0000037!2.46e-09!172;CL:0000566!2.46e-09!172;CL:0000839!3.06e-09!70;CL:0002032!8.24e-09!165;CL:0000837!8.24e-09!165;CL:0000988!1.44e-08!182;CL:0000766!2.55e-08!76;CL:0000784!4.82e-08!3;CL:0000039!3.92e-07!7;CL:0000586!3.92e-07!7 | |||
|ontology_enrichment_celltype_v019=CL:0000946;4.66e-21;1!CL:0000786;4.66e-21;1!CL:0000945;1.10e-20;24!CL:0000451;6.36e-17;10!CL:0000840;2.75e-14;5!CL:0000990;7.57e-10;8!CL:0000784;6.56e-08;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000946,5.16e-21,1;CL:0000786,5.16e-21,1;CL:0000980,5.16e-21,1;CL:0000945,1.33e-20,24;CL:0000826,1.33e-20,24;CL:0000451,5.70e-17,10;CL:0000840,2.49e-14,5;CL:0001029,2.49e-14,5;CL:0000785,3.35e-11,2;CL:0000955,3.35e-11,2;CL:0000818,3.35e-11,2;CL:0000954,3.35e-11,2;CL:0000816,3.35e-11,2;CL:0000990,7.08e-10,8;CL:0000838,1.35e-09,52;CL:0000542,2.04e-09,53;CL:0000051,2.04e-09,53;CL:0000738,7.02e-09,136;CL:0002087,4.13e-08,115;CL:0000784,6.34e-08,3;CL:0000817,6.78e-08,3;CL:0002031,9.23e-08,120;CL:0000037,4.14e-07,168 | |||
|ontology_enrichment_development_v019=CL:0000954;3.18e-11;2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!3.83e-09!80;UBERON:0002390!5.87e-09!102;UBERON:0003061!5.87e-09!102;UBERON:0002405!1.07e-08!115;UBERON:0001474!2.56e-08!86;UBERON:0002193!7.13e-08!112 | |||
|ontology_enrichment_uberon_v019=UBERON:0002106;4.52e-08;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002106,4.52e-08,3;UBERON:0004854,4.52e-08,3;UBERON:0009034,4.52e-08,3;UBERON:0002095,4.52e-08,3;UBERON:0004782,4.52e-08,3;UBERON:0003281,4.52e-08,3;UBERON:0009664,4.52e-08,3;UBERON:0002296,4.52e-08,3;UBERON:0005602,4.52e-08,3;UBERON:0001179,4.52e-08,3;UBERON:0006293,4.52e-08,3 | |||
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|short_description=p12@DNASE1L3 | |||
}} | }} |
Latest revision as of 05:14, 19 September 2015
Short description: | p12@DNASE1L3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_12_at_DNASE1L3_5end |
Coexpression cluster: | C74_splenic_B_b_plasma_xeroderma_lymphoma_hairy |
Association with transcript: | 165bp_to_ENST00000318316, ENST00000460422, NM_004944, uc003djp.1_5end |
EntrezGene: | DNASE1L3 |
HGNC: | 2959 |
UniProt: | Q13609C9J0L2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
antibody secreting cell | 5.16e-21 | 1 |
plasma cell | 5.16e-21 | 1 |
plasmablast | 5.16e-21 | 1 |
lymphocyte of B lineage | 1.33e-20 | 24 |
pro-B cell | 1.33e-20 | 24 |
dendritic cell | 5.70e-17 | 10 |
immature conventional dendritic cell | 2.49e-14 | 5 |
common dendritic progenitor | 2.49e-14 | 5 |
mature B cell | 3.35e-11 | 2 |
pre-B-II cell | 3.35e-11 | 2 |
transitional stage B cell | 3.35e-11 | 2 |
small pre-B-II cell | 3.35e-11 | 2 |
immature B cell | 3.35e-11 | 2 |
conventional dendritic cell | 7.08e-10 | 8 |
lymphoid lineage restricted progenitor cell | 1.35e-09 | 52 |
lymphocyte | 2.04e-09 | 53 |
common lymphoid progenitor | 2.04e-09 | 53 |
leukocyte | 7.02e-09 | 136 |
nongranular leukocyte | 4.13e-08 | 115 |
plasmacytoid dendritic cell | 6.34e-08 | 3 |
precursor B cell | 6.78e-08 | 3 |
hematopoietic lineage restricted progenitor cell | 9.23e-08 | 120 |
hematopoietic stem cell | 4.14e-07 | 168 |
Ontology term | p-value | n |
---|---|---|
spleen | 4.52e-08 | 3 |
gastrointestinal system mesentery | 4.52e-08 | 3 |
stomach region | 4.52e-08 | 3 |
mesentery | 4.52e-08 | 3 |
gastrointestinal system serosa | 4.52e-08 | 3 |
mesentery of stomach | 4.52e-08 | 3 |
gut mesentery | 4.52e-08 | 3 |
dorsal mesentery | 4.52e-08 | 3 |
dorsal mesogastrium | 4.52e-08 | 3 |
peritoneal cavity | 4.52e-08 | 3 |
spleen primordium | 4.52e-08 | 3 |