FFCP PHASE1:Hg19::chr4:109087906..109087928,-: Difference between revisions
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|id=chr4:109087906..109087928,-
|short_description=p12@LEF1
|description=CAGE_peak_12_at_LEF1_5end
|association_with_transcript=23bp_to_ENST00000505293_5end
|Entre...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=51176 | |EntrezGene=51176 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6551 | |HGNC=6551 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=23bp_to_ENST00000505293_5end | |||
|cluster_id=chr4:109087906..109087928,- | |||
|coexpression_cluster_id=C28 | |||
|description=CAGE_peak_12_at_LEF1_5end | |||
|id=chr4:109087906..109087928,- | |||
|ontology_enrichment_celltype=CL:0000084!1.18e-24!25;CL:0000827!1.18e-24!25;CL:0000791!2.28e-24!18;CL:0000789!2.28e-24!18;CL:0002420!2.28e-24!18;CL:0002419!2.28e-24!18;CL:0000790!2.28e-24!18;CL:0000542!5.27e-20!53;CL:0000051!5.27e-20!53;CL:0000838!7.41e-19!52;CL:0000625!1.09e-14!11;CL:0000624!2.28e-13!6;CL:0000037!5.36e-09!172;CL:0000566!5.36e-09!172;CL:0002087!2.25e-08!119;CL:0000988!5.78e-08!182;CL:0000898!1.20e-07!3;CL:0000738!2.53e-07!140;CL:0000842!3.27e-07!3;CL:0002032!4.86e-07!165;CL:0000837!4.86e-07!165 | |||
|ontology_enrichment_celltype_v019=CL:0000084;1.03e-31;25!CL:0000791;3.42e-26;18!CL:0000789;3.42e-26;18!CL:0002419;3.42e-26;18!CL:0000624;4.87e-21;6!CL:0000898;6.97e-16;3!CL:0000226;4.34e-15;3!CL:0000842;4.34e-15;3!CL:0000815;1.93e-11;2!CL:0000792;1.93e-11;2!CL:0002677;1.93e-11;2!CL:0000625;2.81e-11;11!CL:0000542;1.36e-09;53 | |||
|ontology_enrichment_celltype_v019_2=CL:0000084,1.08e-31,25;CL:0000827,1.08e-31,25;CL:0000791,3.58e-26,18;CL:0000789,3.58e-26,18;CL:0002420,3.58e-26,18;CL:0002419,3.58e-26,18;CL:0000790,3.58e-26,18;CL:0000624,3.96e-21,6;CL:0000838,3.39e-16,52;CL:0000898,6.63e-16,3;CL:0000542,7.81e-16,53;CL:0000051,7.81e-16,53;CL:0000226,6.94e-15,3;CL:0000842,6.94e-15,3;CL:0000815,2.09e-11,2;CL:0000792,2.09e-11,2;CL:0002677,2.09e-11,2;CL:0000625,3.25e-11,11;CL:0002087,8.80e-09,115;CL:0000738,5.90e-08,136;CL:0000037,1.90e-07,168;CL:0000988,7.32e-07,177 | |||
|ontology_enrichment_development_v019=CL:0000790;3.42e-26;18!CL:0000051;1.36e-09;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!1.05e-07!15;UBERON:0000179!1.05e-07!15;UBERON:0000463!1.05e-07!15;UBERON:0004177!1.10e-07!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0002370;5.06e-12;2!UBERON:0005058;5.06e-12;2!UBERON:0009113;5.06e-12;2!UBERON:0000178;7.30e-08;15!UBERON:0000179;7.30e-08;15!UBERON:0000463;7.30e-08;15!UBERON:0002193;6.04e-07;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,1.66e-12,4;UBERON:0005058,1.66e-12,4;UBERON:0009113,1.66e-12,4;UBERON:0003295,1.66e-12,4;UBERON:0005562,1.66e-12,4;UBERON:0003351,1.75e-08,6;UBERON:0001042,2.11e-08,10;UBERON:0009145,2.11e-08,10;UBERON:0000178,7.47e-08,15;UBERON:0000179,7.47e-08,15;UBERON:0000463,7.47e-08,15;UBERON:0006562,1.21e-07,11;UBERON:0004177,2.51e-07,7;UBERON:0005057,2.51e-07,7 | |||
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| ||
|short_description=p12@LEF1 | |||
}} | }} |
Latest revision as of 14:52, 24 September 2015
Short description: | p12@LEF1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_12_at_LEF1_5end |
Coexpression cluster: | C28_thymus_acute_vein_Hodgkin_chronic_throat_Dendritic |
Association with transcript: | 23bp_to_ENST00000505293_5end |
EntrezGene: | LEF1 |
HGNC: | 6551 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
T cell | 1.08e-31 | 25 |
pro-T cell | 1.08e-31 | 25 |
mature alpha-beta T cell | 3.58e-26 | 18 |
alpha-beta T cell | 3.58e-26 | 18 |
immature T cell | 3.58e-26 | 18 |
mature T cell | 3.58e-26 | 18 |
immature alpha-beta T cell | 3.58e-26 | 18 |
CD4-positive, alpha-beta T cell | 3.96e-21 | 6 |
lymphoid lineage restricted progenitor cell | 3.39e-16 | 52 |
naive T cell | 6.63e-16 | 3 |
lymphocyte | 7.81e-16 | 53 |
common lymphoid progenitor | 7.81e-16 | 53 |
single nucleate cell | 6.94e-15 | 3 |
mononuclear cell | 6.94e-15 | 3 |
regulatory T cell | 2.09e-11 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 2.09e-11 | 2 |
naive regulatory T cell | 2.09e-11 | 2 |
CD8-positive, alpha-beta T cell | 3.25e-11 | 11 |
nongranular leukocyte | 8.80e-09 | 115 |
leukocyte | 5.90e-08 | 136 |
hematopoietic stem cell | 1.90e-07 | 168 |
hematopoietic cell | 7.32e-07 | 177 |
Ontology term | p-value | n |
---|---|---|
thymus | 1.66e-12 | 4 |
hemolymphoid system gland | 1.66e-12 | 4 |
thymic region | 1.66e-12 | 4 |
pharyngeal gland | 1.66e-12 | 4 |
thymus primordium | 1.66e-12 | 4 |
pharyngeal epithelium | 1.75e-08 | 6 |
chordate pharynx | 2.11e-08 | 10 |
pharyngeal region of foregut | 2.11e-08 | 10 |
blood | 7.47e-08 | 15 |
haemolymphatic fluid | 7.47e-08 | 15 |
organism substance | 7.47e-08 | 15 |
pharynx | 1.21e-07 | 11 |
hemopoietic organ | 2.51e-07 | 7 |
immune organ | 2.51e-07 | 7 |