FFCP PHASE1:Hg19::chr4:109089436..109089456,-: Difference between revisions
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(Created page with "{{FFCP
|id=chr4:109089436..109089456,-
|short_description=p22@LEF1
|description=CAGE_peak_22_at_LEF1_5end
|association_with_transcript=121bp_to_ENST00000265165,uc003hyt.1,...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=51176 | |EntrezGene=51176 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6551 | |HGNC=6551 | ||
|TSSclassifier=strong | |||
|UniProt=Q9UJU2 | |UniProt=Q9UJU2 | ||
|association_with_transcript=121bp_to_ENST00000265165,uc003hyt.1,uc003hyu.1,uc003hyv.1,uc010imb.1_5end | |||
|cluster_id=chr4:109089436..109089456,- | |||
|coexpression_cluster_id=C1225 | |||
|description=CAGE_peak_22_at_LEF1_5end | |||
|id=chr4:109089436..109089456,- | |||
|ontology_enrichment_celltype=CL:0000084!2.23e-20!25;CL:0000827!2.23e-20!25;CL:0000791!9.25e-20!18;CL:0000789!9.25e-20!18;CL:0002420!9.25e-20!18;CL:0002419!9.25e-20!18;CL:0000790!9.25e-20!18;CL:0000838!8.00e-16!52;CL:0000542!2.16e-15!53;CL:0000051!2.16e-15!53;CL:0000624!8.81e-13!6;CL:0000625!8.62e-11!11;CL:0000898!3.46e-07!3;CL:0000037!9.14e-07!172;CL:0000566!9.14e-07!172 | |||
|ontology_enrichment_celltype_v019=CL:0000084;7.79e-26;25!CL:0000624;2.01e-18;6!CL:0000791;8.79e-18;18!CL:0000789;8.79e-18;18!CL:0002419;8.79e-18;18!CL:0000815;8.69e-15;2!CL:0000792;8.69e-15;2!CL:0002677;8.69e-15;2!CL:0000898;3.66e-10;3!CL:0000817;4.25e-08;1!CL:0000542;7.98e-08;53 | |||
|ontology_enrichment_celltype_v019_2=CL:0000084,6.82e-26,25;CL:0000827,6.82e-26,25;CL:0000624,1.37e-18,6;CL:0000791,7.06e-18,18;CL:0000789,7.06e-18,18;CL:0002420,7.06e-18,18;CL:0002419,7.06e-18,18;CL:0000790,7.06e-18,18;CL:0000815,1.11e-14,2;CL:0000792,1.11e-14,2;CL:0002677,1.11e-14,2;CL:0000838,4.49e-14,52;CL:0000542,9.00e-14,53;CL:0000051,9.00e-14,53;CL:0000898,4.31e-10,3 | |||
|ontology_enrichment_development_v019=CL:0000790;8.79e-18;18!CL:0000051;7.98e-08;53 | |||
|ontology_enrichment_disease=DOID:1036!1.15e-08!8 | |||
|ontology_enrichment_disease_v019=DOID:1036;1.13e-08;8!DOID:8552;2.17e-08;1 | |||
|ontology_enrichment_disease_v019_2=DOID:1036,1.19e-08,8;DOID:8552,2.17e-08,1;DOID:1240,4.82e-08,39 | |||
|ontology_enrichment_uberon=UBERON:0000178!1.94e-09!15;UBERON:0000179!1.94e-09!15;UBERON:0000463!1.94e-09!15;UBERON:0007023!7.61e-08!115 | |||
|ontology_enrichment_uberon_v019=UBERON:0002370;1.15e-15;2!UBERON:0005058;1.15e-15;2!UBERON:0009113;1.15e-15;2!UBERON:0000029;4.25e-08;1!UBERON:0004177;9.07e-07;5!UBERON:0005057;9.07e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,2.89e-08,4;UBERON:0005058,2.89e-08,4;UBERON:0009113,2.89e-08,4;UBERON:0003295,2.89e-08,4;UBERON:0005562,2.89e-08,4;UBERON:0000029,3.33e-08,1;UBERON:0000974,5.94e-07,10 | |||
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| ||
|short_description=p22@LEF1 | |||
}} | }} |
Latest revision as of 15:08, 24 September 2015
Short description: | p22@LEF1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_22_at_LEF1_5end |
Coexpression cluster: | C1225_thymus_acute_CD4_CD8_Hodgkin_Peripheral_lymph |
Association with transcript: | 121bp_to_ENST00000265165, uc003hyt.1, uc003hyu.1, uc003hyv.1, uc010imb.1_5end |
EntrezGene: | LEF1 |
HGNC: | 6551 |
UniProt: | Q9UJU2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
T cell | 6.82e-26 | 25 |
pro-T cell | 6.82e-26 | 25 |
CD4-positive, alpha-beta T cell | 1.37e-18 | 6 |
mature alpha-beta T cell | 7.06e-18 | 18 |
alpha-beta T cell | 7.06e-18 | 18 |
immature T cell | 7.06e-18 | 18 |
mature T cell | 7.06e-18 | 18 |
immature alpha-beta T cell | 7.06e-18 | 18 |
regulatory T cell | 1.11e-14 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 1.11e-14 | 2 |
naive regulatory T cell | 1.11e-14 | 2 |
lymphoid lineage restricted progenitor cell | 4.49e-14 | 52 |
lymphocyte | 9.00e-14 | 53 |
common lymphoid progenitor | 9.00e-14 | 53 |
naive T cell | 4.31e-10 | 3 |
Ontology term | p-value | n |
---|---|---|
thymus | 2.89e-08 | 4 |
hemolymphoid system gland | 2.89e-08 | 4 |
thymic region | 2.89e-08 | 4 |
pharyngeal gland | 2.89e-08 | 4 |
thymus primordium | 2.89e-08 | 4 |
lymph node | 3.33e-08 | 1 |
neck | 5.94e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
chronic leukemia | 1.19e-08 | 8 |
chronic myeloid leukemia | 2.17e-08 | 1 |
leukemia | 4.82e-08 | 39 |