FFCP PHASE1:Hg19::chr5:111092930..111092941,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr5:111092930..111092941,-
|short_description=p7@C5orf13
|description=CAGE_peak_7_at_C5orf13_5end
|association_with_transcript=3bp_to_NM_004772,uc003kpk.2,uc00...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=9315 | |EntrezGene=9315 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16834 | |HGNC=16834 | ||
|TSSclassifier=strong | |||
|UniProt=Q16612 | |UniProt=Q16612 | ||
|association_with_transcript=3bp_to_NM_004772,uc003kpk.2,uc003kpm.2_5end | |||
|cluster_id=chr5:111092930..111092941,- | |||
|coexpression_cluster_id=C4449 | |||
|description=CAGE_peak_7_at_C5orf13_5end | |||
|id=chr5:111092930..111092941,- | |||
|ontology_enrichment_celltype=CL:0002319!9.75e-07!25 | |||
|ontology_enrichment_celltype_v019=CL:0002319;4.10e-08;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0002319,5.20e-08,25;CL:0000047,1.36e-07,8;CL:0000133,6.09e-07,59 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.84e-21!82;UBERON:0005743!9.02e-21!86;UBERON:0000073!5.16e-20!94;UBERON:0001016!5.16e-20!94;UBERON:0000955!7.71e-16!69;UBERON:0006238!7.71e-16!69;UBERON:0000924!2.69e-15!173;UBERON:0006601!2.69e-15!173;UBERON:0004121!7.95e-15!169;UBERON:0001049!1.32e-12!57;UBERON:0005068!1.32e-12!57;UBERON:0006241!1.32e-12!57;UBERON:0007135!1.32e-12!57;UBERON:0002616!2.05e-12!59;UBERON:0002346!2.01e-11!90;UBERON:0000956!4.66e-11!25;UBERON:0000203!4.66e-11!25;UBERON:0003075!5.15e-11!86;UBERON:0007284!5.15e-11!86;UBERON:0001950!6.09e-11!20;UBERON:0002619!1.27e-10!22;UBERON:0000033!1.43e-10!123;UBERON:0000153!1.70e-10!129;UBERON:0007811!1.70e-10!129;UBERON:0001893!3.98e-10!34;UBERON:0001869!4.17e-10!32;UBERON:0002791!1.25e-09!33;UBERON:0002780!1.99e-09!41;UBERON:0001890!1.99e-09!41;UBERON:0006240!1.99e-09!41;UBERON:0002020!2.67e-09!34;UBERON:0003528!2.67e-09!34;UBERON:0003080!9.16e-09!42;UBERON:0000468!3.71e-08!659;UBERON:0003056!8.53e-08!61;UBERON:0007023!1.79e-07!115;UBERON:0000475!6.59e-07!365 | |||
|ontology_enrichment_uberon_v019=UBERON:0001950;4.70e-13;20!UBERON:0000956;5.47e-13;25!UBERON:0000203;5.47e-13;25!UBERON:0002619;3.23e-12;22!UBERON:0001869;2.21e-10;32!UBERON:0001893;5.92e-10;34!UBERON:0000922;1.65e-09;49!UBERON:0002791;3.67e-09;32!UBERON:0003528;1.23e-08;34!UBERON:0002020;1.23e-08;34!UBERON:0001017;1.69e-08;75!UBERON:0001016;2.52e-08;83!UBERON:0000955;2.72e-08;68!UBERON:0000073;3.96e-08;53!UBERON:0002616;3.96e-08;53!UBERON:0002780;5.54e-08;41!UBERON:0001890;5.54e-08;41 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,6.86e-25,81;UBERON:0001016,1.46e-24,89;UBERON:0000955,3.02e-18,68;UBERON:0006238,3.02e-18,68;UBERON:0004121,9.77e-18,171;UBERON:0000924,9.77e-18,171;UBERON:0006601,9.77e-18,171;UBERON:0001049,2.18e-14,56;UBERON:0005068,2.18e-14,56;UBERON:0006241,2.18e-14,56;UBERON:0007135,2.18e-14,56;UBERON:0000073,9.35e-14,53;UBERON:0002616,9.35e-14,53;UBERON:0002346,3.11e-13,86;UBERON:0001950,5.56e-13,20;UBERON:0000956,1.30e-12,25;UBERON:0000203,1.30e-12,25;UBERON:0003075,1.86e-12,82;UBERON:0007284,1.86e-12,82;UBERON:0002619,5.44e-12,22;UBERON:0011216,1.41e-11,223;UBERON:0001869,5.72e-11,32;UBERON:0001893,8.84e-11,34;UBERON:0002780,1.21e-10,41;UBERON:0001890,1.21e-10,41;UBERON:0003080,1.21e-10,41;UBERON:0006240,1.21e-10,41;UBERON:0010371,3.38e-10,104;UBERON:0002791,9.66e-10,32;UBERON:0003528,2.35e-09,34;UBERON:0002020,2.35e-09,34;UBERON:0003056,9.27e-09,61;UBERON:0010314,2.92e-08,132 | |||
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|phase1_expression=1.81678379270557,1.2846031433459,0.845726424575827,0,0.893922188854576,0,2.53299878168311,0,0,0.491467873003018,0,1.74753097704138,2.37390280405608,2.22779435328084,0.662794751455832,2.01697543935533,1.20538905604795,2.92124036154949,0.975865597581014,1.47745269692145,1.63200552995402,2.19418305034661,2.0036519099174,1.77936752594749,1.00434111675842,0.61130724598361,0.492603536699674,0.393553906568396,0.393364276848904,0,0.154816123316076,0,0,0,0.387336002901508,0.142169232487422,2.93600439334847,0,0,0.217010870715852,3.80656306207871,2.91504299417082,4.12120908214698,0.145398238779565,0,0.242584061187816,0.232429036905685,0,0,0,0.512321413058201,0,0,0,0,0.188242339542605,0.272906150057846,0,0,0.320929027076094,0,0,0,0,0,0.56738522469114,0,0,0,0,0,0,0,0,0,0,0.561643155732475,0.300353785683013,0.64290234678832,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.28685314316103,0,2.37045676297569,0,0,0.205601498999509,0,0,0,0,0,0,0,0,0,0,0.328875809207352,0,0.289803085735052,0.296573126324121,0,0,0.113309342697566,0,0,0,0,0,0,0,0.127986611154418,0,0,0,0,0,0,0,2.01210257911091,0.895037932904712,0.361439152384566,0.50133791063589,0.579386075843295,3.1811437882044,4.37971383272372,2.26883561193763,0.886917589850256,1.84453049955565,3.07800827419625,0.728590576585084,0.370784442784429,0,0.174129737299267,0,0.953962497221368,1.14398982156026,2.22874500797739,0.596287222100115,0.860234595106124,0,0,0.838998872419812,0.275118041940067,0.417989933073621,1.29208379584664,0.71153252537342,1.00416183829401,0.402829317109147,0,0.24406205754817,1.10298924103761,1.62028389576352,1.3394959242612,0.44905874525234,0.900891843866578,0,0.949265659568129,0.549605231791222,0,0,0.872188104285069,0.993943903390637,0.633152558322899,0.132409180813219,0,0.709336764396714,1.12135520028461,0,1.2333377420858,1.8672662123986,0.404132016209064,0.653847612453835,0.605429710579726,1.15235184896,0.234321431833797,0,0,1.79338416662161,0.939475989150119,1.13311061057692,0.140450806702248,0.816616685019573,1.71968044236475,0.723280468230358,0,0.494533858557114,0,0.718618141816238,1.5150250255866,1.00094815897571,0.554128230968366,0.877955241761676,0.30648779579902,0.600952235626387,0.907457465280168,1.25572744982203,0.85422955527427,0.635795703478686,0.900273288253207,1.23663035086127,0.257640540045629,0.558350568994769,0.843881661206331,0.584622030967192,1.00973509697646,1.93304787148829,1.77810662500693,0.355009592516614,0.906768884048762,0.508681776931463,0,0.818238361772504,0,6.46460642486856,5.4337205011809,5.92589108634544,4.76840853070704,3.78481276313443,2.18986415445498,3.12899064659632,0.643240938192885,0,1.39310378409594,0,0,0.168584690078102,0,0.110293972732394,0,0.237270619111097,0.134831308160164,0.392442930250692,0.38474715694639,0.738155454624648,0,2.4694440679884,1.47008711385542,0,0,0,0,0.491953754172454,1.3725424823882,0,0,0.100528972411631,1.85176890317059,0,0,0,3.4779121492523,2.34817388471643,0.288732895522148,0.462985512576611,0.951270761172991,0,0,2.95460407304877,0.936017060556951,0.891786973732369,0,0.16798212819886,0.141775097242386,0.179117045405697,0.290633938513962,0,3.94130590316755,1.67292024625129,8.70778085271243,7.06187771743111,4.03975786964416,0,0,0,0,0,0,0,0.784917590417525,1.74384027533312,2.6401782895542,0.646358578788889,0,2.535908257668,1.59562869950922,0,1.02882949704857,0,1.0656887160644,1.57275793023962,3.25572963234866,2.46972101034231,1.95441710576241,1.77695974371273,0,0.904318131178758,1.74306691720059,0.799783929456456,2.43247561282381,1.50677127429638,0,1.4377491329495,3.44585807502342,1.42636905040718,0.868687840005475,0.61642896765115,0.895304816199478,0,0,0,0.256686072559497,8.13102797511883,13.0139853857622,3.09315525111078,15.7465289414288,4.46557126157214,0,0,0,2.57652132610194,2.50085260529839,0.813795071099207,2.07970861530807,0.713715955188647,2.52323864054295,2.10854546986884,0.902838299183157,0,0,1.32845119707087,0.737476674166813,2.43274120510632,1.95801157462741,2.74514739048685,0.206768026122887,0.215714200818617,0.106727557803444,0.606255142892519,0,3.62868351995616,1.24053903909388,0.767309866440312,1.96462066103151,0.640695746278505,1.02341449813341,1.60853921143608,0,2.31314540703983,1.77561725313127,3.28508624055237,1.03850885836724,1.39452454151951,0.120859449591622,0.601519410909855,0,0.34444334449382,1.0925470080403,0.917870904715969,0,1.00119938235739,2.35304930753057,0,2.00548094896464,0,0.680374821106063,0.215915916102139,0,1.08378575017541,0.501689773854853,0.254876273045038,0.831076008928724,0.223874754722178,0.219259876645935,0,0.512900250232778,0.656029291399411,0,0.721287081534056,1.28197250745681,1.07262349896764,1.72279661398852,1.30012049207304,0,1.06337790121334,0.616194468458578,1.84204409671355,0.964856007391714,3.75970857038958,0.580066775656914,0.596586391912706,2.49289699810865,0,0,0.510450849978337,0.10115778085555,0.464845549297286,0,0.6970372701606,0.924100740528266,0,0,0.9266210955196,0.286249773483982,2.97726695487734,1.89827654831236,1.14378116354295,1.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| ||
|short_description=p7@C5orf13 | |||
}} | }} |
Latest revision as of 17:32, 19 September 2015
Short description: | p7@C5orf13 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_C5orf13_5end |
Coexpression cluster: | C4449_brain_temporal_occipital_cerebellum_duodenum_Neurons_parietal |
Association with transcript: | 3bp_to_NM_004772, uc003kpk.2, uc003kpm.2_5end |
EntrezGene: | C5orf13 |
HGNC: | 16834 |
UniProt: | Q16612 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 5.20e-08 | 25 |
neuronal stem cell | 1.36e-07 | 8 |
neurectodermal cell | 6.09e-07 | 59 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 6.86e-25 | 81 |
nervous system | 1.46e-24 | 89 |
brain | 3.02e-18 | 68 |
future brain | 3.02e-18 | 68 |
ectoderm-derived structure | 9.77e-18 | 171 |
ectoderm | 9.77e-18 | 171 |
presumptive ectoderm | 9.77e-18 | 171 |
neural tube | 2.18e-14 | 56 |
neural rod | 2.18e-14 | 56 |
future spinal cord | 2.18e-14 | 56 |
neural keel | 2.18e-14 | 56 |
regional part of nervous system | 9.35e-14 | 53 |
regional part of brain | 9.35e-14 | 53 |
neurectoderm | 3.11e-13 | 86 |
neocortex | 5.56e-13 | 20 |
cerebral cortex | 1.30e-12 | 25 |
pallium | 1.30e-12 | 25 |
neural plate | 1.86e-12 | 82 |
presumptive neural plate | 1.86e-12 | 82 |
regional part of cerebral cortex | 5.44e-12 | 22 |
organ system subdivision | 1.41e-11 | 223 |
cerebral hemisphere | 5.72e-11 | 32 |
telencephalon | 8.84e-11 | 34 |
regional part of forebrain | 1.21e-10 | 41 |
forebrain | 1.21e-10 | 41 |
anterior neural tube | 1.21e-10 | 41 |
future forebrain | 1.21e-10 | 41 |
ecto-epithelium | 3.38e-10 | 104 |
regional part of telencephalon | 9.66e-10 | 32 |
brain grey matter | 2.35e-09 | 34 |
gray matter | 2.35e-09 | 34 |
pre-chordal neural plate | 9.27e-09 | 61 |
structure with developmental contribution from neural crest | 2.92e-08 | 132 |