FFCP PHASE1:Hg19::chr5:151066469..151066483,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr5:151066469..151066483,-
|short_description=p1@SPARC
|description=CAGE_peak_1_at_SPARC_5end
|association_with_transcript=33bp_to_NM_003118,uc003lui.2_5end
|...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6678 | |EntrezGene=6678 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11219 | |HGNC=11219 | ||
|TSSclassifier=strong | |||
|UniProt=P09486 | |UniProt=P09486 | ||
|association_with_transcript=33bp_to_NM_003118,uc003lui.2_5end | |||
|cluster_id=chr5:151066469..151066483,- | |||
|coexpression_cluster_id=C59 | |||
|description=CAGE_peak_1_at_SPARC_5end | |||
|id=chr5:151066469..151066483,- | |||
|ontology_enrichment_celltype=CL:0000055!1.84e-34!180;CL:0000222!1.47e-23!119;CL:0000057!6.48e-20!75;CL:0000183!2.67e-14!59;CL:0000680!1.13e-13!57;CL:0000056!1.13e-13!57;CL:0000355!1.13e-13!57;CL:0000187!3.73e-13!54;CL:0000192!1.39e-11!42;CL:0000514!1.39e-11!42;CL:0000393!2.53e-11!60;CL:0000211!2.53e-11!60;CL:0000213!2.43e-10!57;CL:0000215!2.43e-10!57;CL:0000220!6.15e-10!246;CL:0002321!1.05e-09!248;CL:0000359!1.88e-09!32;CL:0000136!7.09e-09!15;CL:0000144!2.35e-07!625;CL:0000115!5.03e-07!35;CL:0002078!5.83e-07!44;CL:0002620!9.97e-07!23 | |||
|ontology_enrichment_celltype_v019=CL:0000134;1.62e-09;55!CL:0000359;6.04e-09;32!CL:0000048;1.22e-08;58!CL:0000192;1.31e-08;43!CL:0000723;1.88e-08;61!CL:0000057;2.34e-08;73!CL:0000136;4.67e-08;13!CL:0000187;9.52e-08;55!CL:0000349;2.08e-07;19!CL:0002320;2.23e-07;188!CL:0002620;9.55e-07;23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,5.63e-24,121;CL:0000057,1.24e-20,76;CL:0000680,5.96e-14,58;CL:0000056,5.96e-14,58;CL:0000355,5.96e-14,58;CL:0000187,1.98e-13,55;CL:0000192,7.57e-12,43;CL:0000514,7.57e-12,43;CL:0000393,1.38e-11,61;CL:0000211,1.38e-11,61;CL:0000213,1.95e-10,58;CL:0000215,1.95e-10,58;CL:0002321,6.66e-10,250;CL:0000359,1.77e-09,32;CL:0000136,6.70e-09,15;CL:0000349,2.08e-07,19;CL:0000115,3.44e-07,36;CL:0002078,4.76e-07,45;CL:0002620,9.57e-07,23 | |||
|ontology_enrichment_development_v019=CL:0000514;1.31e-08;43!CL:0000355;9.18e-08;58!CL:0000222;4.57e-07;121 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004535!1.97e-20!110;UBERON:0001009!5.95e-20!113;UBERON:0002049!6.75e-20!79;UBERON:0007798!6.75e-20!79;UBERON:0004872!7.74e-20!84;UBERON:0000055!5.40e-17!69;UBERON:0000914!2.91e-15!83;UBERON:0002329!2.91e-15!83;UBERON:0003077!2.91e-15!83;UBERON:0003059!2.91e-15!83;UBERON:0007282!2.91e-15!83;UBERON:0009618!2.91e-15!83;UBERON:0007285!2.91e-15!83;UBERON:0001981!5.81e-15!60;UBERON:0007500!5.81e-15!60;UBERON:0004537!5.81e-15!60;UBERON:0006965!5.81e-15!60;UBERON:0001134!5.98e-14!61;UBERON:0002036!5.98e-14!61;UBERON:0003082!5.98e-14!61;UBERON:0004290!7.21e-14!70;UBERON:0002385!1.86e-13!63;UBERON:0001015!1.86e-13!63;UBERON:0000383!1.86e-13!63;UBERON:0003914!4.21e-13!118;UBERON:0000475!7.60e-13!365;UBERON:0001637!4.44e-12!42;UBERON:0003509!4.44e-12!42;UBERON:0004572!4.44e-12!42;UBERON:0005256!1.61e-11!143;UBERON:0000486!6.63e-11!82;UBERON:0000468!7.30e-11!659;UBERON:0000490!8.27e-11!138;UBERON:0004573!9.39e-10!33;UBERON:0004571!9.39e-10!33;UBERON:0000119!3.89e-09!312;UBERON:0000483!1.03e-08!309;UBERON:0004111!2.40e-08!241;UBERON:0000477!5.10e-08!286;UBERON:0002100!5.79e-08!216;UBERON:0000467!7.70e-08!625;UBERON:0000480!9.97e-08!626;UBERON:0000025!2.08e-07!194 | |||
|ontology_enrichment_uberon_v019=UBERON:0001637;2.75e-09;42!UBERON:0003509;2.75e-09;42!UBERON:0004572;2.75e-09;42!UBERON:0004573;5.50e-09;33!UBERON:0004571;5.50e-09;33!UBERON:0007500;1.60e-08;56!UBERON:0001981;1.60e-08;56!UBERON:0004537;1.60e-08;56!UBERON:0000055;1.65e-08;65!UBERON:0002049;4.20e-08;75!UBERON:0007798;4.20e-08;75!UBERON:0002384;6.68e-08;198 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004535,6.16e-20,109;UBERON:0001009,1.83e-19,112;UBERON:0002049,2.31e-19,78;UBERON:0007798,2.31e-19,78;UBERON:0004872,2.60e-19,83;UBERON:0000055,1.83e-16,68;UBERON:0007503,3.89e-15,78;UBERON:0007500,1.97e-14,59;UBERON:0001981,1.97e-14,59;UBERON:0004537,1.97e-14,59;UBERON:0006965,1.97e-14,59;UBERON:0007524,2.39e-14,73;UBERON:0001134,3.14e-14,62;UBERON:0002036,3.14e-14,62;UBERON:0003082,3.14e-14,62;UBERON:0002329,3.79e-14,71;UBERON:0003059,3.79e-14,71;UBERON:0007282,3.79e-14,71;UBERON:0004290,3.79e-14,71;UBERON:0009618,3.79e-14,71;UBERON:0003077,6.83e-14,72;UBERON:0007285,6.83e-14,72;UBERON:0002385,9.84e-14,64;UBERON:0001015,9.84e-14,64;UBERON:0000383,9.84e-14,64;UBERON:0003914,4.46e-13,117;UBERON:0001637,4.09e-12,42;UBERON:0003509,4.09e-12,42;UBERON:0004572,4.09e-12,42;UBERON:0000490,1.31e-11,148;UBERON:0003104,2.17e-11,160;UBERON:0009142,2.17e-11,160;UBERON:0005256,2.71e-11,122;UBERON:0000486,4.42e-11,83;UBERON:0004573,8.81e-10,33;UBERON:0004571,8.81e-10,33;UBERON:0000119,1.48e-09,309;UBERON:0000926,2.93e-09,315;UBERON:0004120,2.93e-09,315;UBERON:0006603,2.93e-09,315;UBERON:0000483,4.03e-09,306;UBERON:0004111,9.58e-09,240;UBERON:0000025,1.65e-07,192 | |||
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| ||
|short_description=p1@SPARC | |||
}} | }} |
Latest revision as of 10:31, 16 September 2015
Short description: | p1@SPARC |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SPARC_5end |
Coexpression cluster: | C59_Smooth_Fibroblast_Mesenchymal_tenocyte_Ewing_skin_hepatic |
Association with transcript: | 33bp_to_NM_003118, uc003lui.2_5end |
EntrezGene: | SPARC |
HGNC: | 11219 |
UniProt: | P09486 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 5.63e-24 | 121 |
fibroblast | 1.24e-20 | 76 |
muscle precursor cell | 5.96e-14 | 58 |
myoblast | 5.96e-14 | 58 |
multi-potent skeletal muscle stem cell | 5.96e-14 | 58 |
muscle cell | 1.98e-13 | 55 |
smooth muscle cell | 7.57e-12 | 43 |
smooth muscle myoblast | 7.57e-12 | 43 |
electrically responsive cell | 1.38e-11 | 61 |
electrically active cell | 1.38e-11 | 61 |
lining cell | 1.95e-10 | 58 |
barrier cell | 1.95e-10 | 58 |
embryonic cell | 6.66e-10 | 250 |
vascular associated smooth muscle cell | 1.77e-09 | 32 |
fat cell | 6.70e-09 | 15 |
extraembryonic cell | 2.08e-07 | 19 |
endothelial cell | 3.44e-07 | 36 |
meso-epithelial cell | 4.76e-07 | 45 |
skin fibroblast | 9.57e-07 | 23 |