Personal tools

UBERON:0000473: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(One intermediate revision by the same user not shown)
Line 10: Line 10:
|has_quality=
|has_quality=
|id=UBERON:0000473
|id=UBERON:0000473
|is_a=UBERON:0000991;;UBERON:0003135
|is_a=UBERON:0000991 ;;UBERON:0003135  
|is_obsolete=
|is_obsolete=
|located_in=
|located_in=
|name=testis
|name=testis
|namespace=
|namespace=FANTOM
|obo_creation_date=
|obo_creation_date=
|part_of=UBERON:0000079
|part_of=UBERON:0000079

Latest revision as of 17:09, 12 September 2014

Name:testis
Namespace:FANTOM
Definition:"gonad of a male animal, produces and releases sperm." [Wikipedia:Testis]
Xrefs:
links:

AAO:0000606
BILA:0000124
BTO:0001363
EFO:0000984
EHDAA2:0002007
EHDAA:8146
EMAPA:17972
EV:0100102
FBbt:00004928
FMA:7210
GAID:396
galen:Testis
HAO:0001007
[ 200px-Gray1144.png 200px-Gray1144.png]
MA:0000411
MAT:0000132
MESH:A.05.360.444.849
MIAA:0000132
ncithesaurus:Testis
OpenCyc:Mx4rvVjM25wpEbGdrcN5Y29ycA
SCTID:181431007
TAO:0000598
VHOG:0000252
WBbt:0006794
XAO:0000157

ZFA:0000598
Synonyms: "genitalia of male organism gonad" EXACT [OBOL:automatic]
"genitalia of male organism gonada" EXACT [OBOL:automatic]
"gonad of genitalia of male organism" EXACT [OBOL:automatic]
"gonad of male genitalia" EXACT [OBOL:automatic]
"gonad of male genitals" EXACT [OBOL:automatic]
"gonad of male organism genitalia" EXACT [OBOL:automatic]
"gonad of male organism reproductive system" EXACT [OBOL:automatic]
"gonad of male reproductive system" EXACT [OBOL:automatic]
"gonad of reproductive system of male organism" EXACT [OBOL:automatic]
"gonada of genitalia of male organism" EXACT [OBOL:automatic]
"gonada of male genitalia" EXACT [OBOL:automatic]
"gonada of male genitals" EXACT [OBOL:automatic]
"gonada of male organism genitalia" EXACT [OBOL:automatic]
"gonada of male organism reproductive system" EXACT [OBOL:automatic]
"gonada of male reproductive system" EXACT [OBOL:automatic]
"gonada of reproductive system of male organism" EXACT [OBOL:automatic]
"male genitalia gonad" EXACT [OBOL:automatic]
"male genitalia gonada" EXACT [OBOL:automatic]
"male genitals gonad" EXACT [OBOL:automatic]
"male gonad" EXACT [OBOL:automatic]
"male organism genitalia gonad" EXACT [OBOL:automatic]
"male organism genitalia gonada" EXACT [OBOL:automatic]
"male organism reproductive system gonad" EXACT [OBOL:automatic]
"male organism reproductive system gonada" EXACT [OBOL:automatic]
"male reproductive system gonad" EXACT [OBOL:automatic]
"male reproductive system gonada" EXACT [OBOL:automatic]
"orchis" RELATED [BTO:0001363]
"reproductive system of male organism gonad" EXACT [OBOL:automatic]
"reproductive system of male organism gonada" EXACT [OBOL:automatic]
"testes" RELATED PLURAL []
"testicle" EXACT [FMA:7210]
"testiculus" RELATED [BTO:0001363]
Alt_id: UBERON:0002117
UBERON:CARO_0000027-FBbt_00004927-FBbt_00004928-FBbt_00007004-FMA_45664-FMA_7210-MA_0000396-MA_0000411-MIAA_0000029-MIAA_0000132-WBbt_0006794-XAO_0000155-XAO_0000157-XAO_0003006-ZFA_0000242-ZFA_0000598
Subset: organ_slim
uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000991(gonad),UBERON:0003135(male reproductive organ)
disjoint_from:UBERON:0000992(female gonad),UBERON:0009117(indifferent gonad)
develops_from:UBERON:0009117(indifferent gonad)
part_of:UBERON:0000079(male reproductive system)



Children

is a:FF:10590-108D5 (testicular germ cell embryonal carcinoma cell line:NEC8),FF:10591-108D6 (testicular germ cell embryonal carcinoma cell line:NEC14),FF:10593-108D8 (testicular germ cell embryonal carcinoma cell line:NEC15)
derives from:FF:0010026 (human testis - adult sample),FF:0011332 (mouse testis- embryo E13 sample),FF:0011352 (mouse testis- embryo E15 sample),FF:0011364 (mouse testis- embryo E16 sample),FF:0011372 (mouse testis- embryo E17 sample),FF:0011377 (mouse testis- embryo E18 sample),FF:0011383 (mouse testis- adult sample),FF:0011412 (mouse testis- neonate N07 sample),FF:0011422 (mouse testis- neonate N10 sample),FF:0011433 (mouse testis- neonate N20 sample),FF:0011495 (mouse testis- neonate N30 sample),FF:0011509 (mouse testis- neonate N00 sample),FF:0101560 (testicular cancer cell line sample)
part of:UBERON:0000998 (seminal vesicle),UBERON:0001343 (seminiferous tubule of testis),UBERON:0004910 (epithelium of male gonad),UBERON:0005297 (testis sex cord)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000473 (testis), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
8.98e-147FFCP PHASE2:Hg19::chr1:44584485..44584512,+#_1fddf08adcbc1fdf3edb8288ea1927cep2@KLF17
8.98e-147FFCP PHASE1:Hg19::chr1:44584485..44584512,+#_1fddf08adcbc1fdf3edb8288ea1927cep2@KLF17
1.5e-122FFCP PHASE2:Hg19::chr5:140053152..140053174,-#_c726ab33e3a6c0047152e35904f138d6p1@DND1
1.5e-122FFCP PHASE2:Hg19::chr1:44584530..44584537,+#_c726ab33e3a6c0047152e35904f138d6p6@KLF17
1.5e-122FFCP PHASE1:Hg19::chr1:44584530..44584537,+#_c726ab33e3a6c0047152e35904f138d6p6@KLF17
1.5e-122FFCP PHASE1:Hg19::chr5:140053152..140053174,-#_c726ab33e3a6c0047152e35904f138d6p1@DND1
1.74e-110FFCP PHASE2:Hg19::chr19:22469215..22469229,+#_5eeec112f4422db71f0faa06a73ede53p2@ZNF729
1.74e-110FFCP PHASE1:Hg19::chr19:22469215..22469229,+#_5eeec112f4422db71f0faa06a73ede53p2@ZNF729
2.1e-110FFCP PHASE2:Hg19::chr12:102133233..102133245,-#_0aa52595a02755675b4bf33be4592fc7p1@SYCP3
2.1e-110FFCP PHASE1:Hg19::chr12:102133233..102133245,-#_0aa52595a02755675b4bf33be4592fc7p1@SYCP3
1.77e-102FFCP PHASE1:Hg19::chr1:44584544..44584557,+#_049e880d470729cf2a62c38d343cb51ap4@KLF17
1.77e-102FFCP PHASE1:Hg19::chr10:118083953..118083965,+#_049e880d470729cf2a62c38d343cb51ap1@C10orf96
1.77e-102FFCP PHASE2:Hg19::chr10:118083953..118083965,+#_049e880d470729cf2a62c38d343cb51ap1@C10orf96
1.77e-102FFCP PHASE2:Hg19::chr1:44584544..44584557,+#_049e880d470729cf2a62c38d343cb51ap4@KLF17
3.32e-102FFCP PHASE2:Hg19::chr9:135232083..135232140,-#_f55a752716e7f1d0322ff24d60607c60p@chr9:135232083..135232140, -
3.32e-102FFCP PHASE1:Hg19::chr9:135232083..135232140,-#_f55a752716e7f1d0322ff24d60607c60p@chr9:135232083..135232140, -
2.26e-98FFCP PHASE1:Hg19::chr12:32717031..32717041,+#_c9b20f6c77b8a9250022ca6f2d43a7dfp@chr12:32717031..32717041, +
2.26e-98FFCP PHASE2:Hg19::chr12:8045030..8045044,+#_c9b20f6c77b8a9250022ca6f2d43a7dfp5@NANOGP1
2.26e-98FFCP PHASE1:Hg19::chr19:40431284..40431296,-#_c9b20f6c77b8a9250022ca6f2d43a7dfp@chr19:40431284..40431296, -
2.26e-98FFCP PHASE1:Hg19::chr15:33905298..33905312,+#_c9b20f6c77b8a9250022ca6f2d43a7dfp@chr15:33905298..33905312, +
2.26e-98FFCP PHASE2:Hg19::chr15:33905298..33905312,+#_c9b20f6c77b8a9250022ca6f2d43a7dfp@chr15:33905298..33905312, +
2.26e-98FFCP PHASE1:Hg19::chr1:227034858..227034868,+#_c9b20f6c77b8a9250022ca6f2d43a7dfp@chr1:227034858..227034868, +
2.26e-98FFCP PHASE2:Hg19::chr2:71755236..71755242,+#_c9b20f6c77b8a9250022ca6f2d43a7dfp@chr2:71755236..71755242, +
2.26e-98FFCP PHASE1:Hg19::chr8:133637624..133637635,-#_c9b20f6c77b8a9250022ca6f2d43a7dfp5@LRRC6
2.26e-98FFCP PHASE2:Hg19::chr1:227034858..227034868,+#_c9b20f6c77b8a9250022ca6f2d43a7dfp@chr1:227034858..227034868, +
2.26e-98FFCP PHASE1:Hg19::chr16:9069001..9069012,-#_c9b20f6c77b8a9250022ca6f2d43a7dfp@chr16:9069001..9069012, -
2.26e-98FFCP PHASE2:Hg19::chr12:32717043..32717051,+#_c9b20f6c77b8a9250022ca6f2d43a7dfp@chr12:32717043..32717051, +
2.26e-98FFCP PHASE2:Hg19::chr11:107782394..107782402,+#_c9b20f6c77b8a9250022ca6f2d43a7dfp@chr11:107782394..107782402, +
2.26e-98FFCP PHASE2:Hg19::chr19:40431284..40431296,-#_c9b20f6c77b8a9250022ca6f2d43a7dfp@chr19:40431284..40431296, -
2.26e-98FFCP PHASE1:Hg19::chr7:2309320..2309348,-#_c9b20f6c77b8a9250022ca6f2d43a7dfp@chr7:2309320..2309348, -
2.26e-98FFCP PHASE1:Hg19::chr2:71755221..71755234,+#_c9b20f6c77b8a9250022ca6f2d43a7dfp@chr2:71755221..71755234, +
2.26e-98FFCP PHASE2:Hg19::chr1:38709054..38709062,+#_c9b20f6c77b8a9250022ca6f2d43a7dfp@chr1:38709054..38709062, +
2.26e-98FFCP PHASE1:Hg19::chr2:71755206..71755213,+#_c9b20f6c77b8a9250022ca6f2d43a7dfp@chr2:71755206..71755213, +
2.26e-98FFCP PHASE2:Hg19::chr2:71755206..71755213,+#_c9b20f6c77b8a9250022ca6f2d43a7dfp@chr2:71755206..71755213, +
2.26e-98FFCP PHASE1:Hg19::chr11:107782394..107782402,+#_c9b20f6c77b8a9250022ca6f2d43a7dfp@chr11:107782394..107782402, +
2.26e-98FFCP PHASE2:Hg19::chr2:233989556..233989568,+#_c9b20f6c77b8a9250022ca6f2d43a7dfp@chr2:233989556..233989568, +
2.26e-98FFCP PHASE2:Hg19::chr8:133637624..133637635,-#_c9b20f6c77b8a9250022ca6f2d43a7dfp5@LRRC6
2.26e-98FFCP PHASE2:Hg19::chr8:133637642..133637653,-#_c9b20f6c77b8a9250022ca6f2d43a7dfp6@LRRC6
2.26e-98FFCP PHASE2:Hg19::chr4:779349..779383,+#_c9b20f6c77b8a9250022ca6f2d43a7dfp@chr4:779349..779383, +
2.26e-98FFCP PHASE2:Hg19::chr2:71755221..71755234,+#_c9b20f6c77b8a9250022ca6f2d43a7dfp@chr2:71755221..71755234, +
2.26e-98FFCP PHASE1:Hg19::chr1:92406327..92406341,+#_c9b20f6c77b8a9250022ca6f2d43a7dfp@chr1:92406327..92406341, +
2.26e-98FFCP PHASE2:Hg19::chr21:27478988..27478996,-#_c9b20f6c77b8a9250022ca6f2d43a7dfp@chr21:27478988..27478996, -
2.26e-98FFCP PHASE2:Hg19::chr19:46003056..46003067,+#_c9b20f6c77b8a9250022ca6f2d43a7dfp11@PPM1N
2.26e-98FFCP PHASE1:Hg19::chr4:779349..779383,+#_c9b20f6c77b8a9250022ca6f2d43a7dfp@chr4:779349..779383, +
2.26e-98FFCP PHASE1:Hg19::chr1:24239991..24240012,-#_c9b20f6c77b8a9250022ca6f2d43a7dfp6@CNR2
2.26e-98FFCP PHASE1:Hg19::chr19:51883879..51883908,-#_c9b20f6c77b8a9250022ca6f2d43a7dfp@chr19:51883879..51883908, -
2.26e-98FFCP PHASE2:Hg19::chr2:65786044..65786055,+#_c9b20f6c77b8a9250022ca6f2d43a7dfp@chr2:65786044..65786055, +
2.26e-98FFCP PHASE1:Hg19::chr21:27478934..27478945,-#_c9b20f6c77b8a9250022ca6f2d43a7dfp@chr21:27478934..27478945, -
2.26e-98FFCP PHASE1:Hg19::chr12:8045030..8045044,+#_c9b20f6c77b8a9250022ca6f2d43a7dfp5@NANOGP1
2.26e-98FFCP PHASE1:Hg19::chr16:24506473..24506474,-#_c9b20f6c77b8a9250022ca6f2d43a7dfp2@BX538205
2.26e-98FFCP PHASE2:Hg19::chr1:24239991..24240012,-#_c9b20f6c77b8a9250022ca6f2d43a7dfp6@CNR2
2.26e-98FFCP PHASE2:Hg19::chr6:6032547..6032560,-#_c9b20f6c77b8a9250022ca6f2d43a7dfp@chr6:6032547..6032560, -
2.26e-98FFCP PHASE2:Hg19::chr21:27478934..27478945,-#_c9b20f6c77b8a9250022ca6f2d43a7dfp@chr21:27478934..27478945, -
2.26e-98FFCP PHASE1:Hg19::chr2:65786044..65786055,+#_c9b20f6c77b8a9250022ca6f2d43a7dfp@chr2:65786044..65786055, +
2.26e-98FFCP PHASE2:Hg19::chr1:44584568..44584585,+#_c9b20f6c77b8a9250022ca6f2d43a7dfp3@KLF17
2.26e-98FFCP PHASE2:Hg19::chr12:32717031..32717041,+#_c9b20f6c77b8a9250022ca6f2d43a7dfp@chr12:32717031..32717041, +
2.26e-98FFCP PHASE2:Hg19::chr16:9069001..9069012,-#_c9b20f6c77b8a9250022ca6f2d43a7dfp@chr16:9069001..9069012, -
2.26e-98FFCP PHASE1:Hg19::chr2:71755236..71755242,+#_c9b20f6c77b8a9250022ca6f2d43a7dfp@chr2:71755236..71755242, +
2.26e-98FFCP PHASE2:Hg19::chr16:24506473..24506474,-#_c9b20f6c77b8a9250022ca6f2d43a7dfp2@BX538205
2.26e-98FFCP PHASE1:Hg19::chr12:32717043..32717051,+#_c9b20f6c77b8a9250022ca6f2d43a7dfp@chr12:32717043..32717051, +
2.26e-98FFCP PHASE1:Hg19::chr8:133637642..133637653,-#_c9b20f6c77b8a9250022ca6f2d43a7dfp6@LRRC6
2.26e-98FFCP PHASE1:Hg19::chr1:44584568..44584585,+#_c9b20f6c77b8a9250022ca6f2d43a7dfp3@KLF17
2.26e-98FFCP PHASE2:Hg19::chr1:92406327..92406341,+#_c9b20f6c77b8a9250022ca6f2d43a7dfp@chr1:92406327..92406341, +
2.26e-98FFCP PHASE2:Hg19::chr19:40431300..40431312,-#_c9b20f6c77b8a9250022ca6f2d43a7dfp@chr19:40431300..40431312, -
2.26e-98FFCP PHASE1:Hg19::chr1:38709054..38709062,+#_c9b20f6c77b8a9250022ca6f2d43a7dfp@chr1:38709054..38709062, +
2.26e-98FFCP PHASE1:Hg19::chr2:233989556..233989568,+#_c9b20f6c77b8a9250022ca6f2d43a7dfp@chr2:233989556..233989568, +
2.26e-98FFCP PHASE2:Hg19::chr19:51883856..51883866,-#_c9b20f6c77b8a9250022ca6f2d43a7dfp@chr19:51883856..51883866, -
2.26e-98FFCP PHASE1:Hg19::chr21:27478988..27478996,-#_c9b20f6c77b8a9250022ca6f2d43a7dfp@chr21:27478988..27478996, -
2.26e-98FFCP PHASE2:Hg19::chr7:2309320..2309348,-#_c9b20f6c77b8a9250022ca6f2d43a7dfp@chr7:2309320..2309348, -
2.26e-98FFCP PHASE1:Hg19::chr19:51883856..51883866,-#_c9b20f6c77b8a9250022ca6f2d43a7dfp@chr19:51883856..51883866, -
2.26e-98FFCP PHASE1:Hg19::chr19:40431300..40431312,-#_c9b20f6c77b8a9250022ca6f2d43a7dfp@chr19:40431300..40431312, -
2.26e-98FFCP PHASE2:Hg19::chr19:51883915..51883934,-#_c9b20f6c77b8a9250022ca6f2d43a7dfp@chr19:51883915..51883934, -
2.26e-98FFCP PHASE1:Hg19::chr19:46003056..46003067,+#_c9b20f6c77b8a9250022ca6f2d43a7dfp11@PPM1N
2.26e-98FFCP PHASE1:Hg19::chr6:6032547..6032560,-#_c9b20f6c77b8a9250022ca6f2d43a7dfp@chr6:6032547..6032560, -
2.26e-98FFCP PHASE1:Hg19::chr19:51883915..51883934,-#_c9b20f6c77b8a9250022ca6f2d43a7dfp@chr19:51883915..51883934, -
2.26e-98FFCP PHASE2:Hg19::chr19:51883879..51883908,-#_c9b20f6c77b8a9250022ca6f2d43a7dfp@chr19:51883879..51883908, -
5.52e-98FFCP PHASE1:Hg19::chr17:12125154..12125159,+#_6698f06c2a4b971ea08a17a4128393bap@chr17:12125154..12125159, +
5.52e-98FFCP PHASE2:Hg19::chr17:12125154..12125159,+#_6698f06c2a4b971ea08a17a4128393bap@chr17:12125154..12125159, +
3.9e-88FFCP PHASE1:Hg19::chr12:10183271..10183289,+#_08e858a72c6110bb7c0269bb50d60837p1@CLEC9A
3.9e-88FFCP PHASE2:Hg19::chr12:10183271..10183289,+#_08e858a72c6110bb7c0269bb50d60837p1@CLEC9A
1.09e-80FFCP PHASE1:Hg19::chr10:135043750..135043761,+#_cc1b1e267dc1efb6444b3f8dfd0148e6p6@UTF1
1.09e-80FFCP PHASE2:Hg19::chr10:135043750..135043761,+#_cc1b1e267dc1efb6444b3f8dfd0148e6p6@UTF1
4.74e-79FFCP PHASE1:Hg19::chrX:114524275..114524308,+#_fd6a46e51203066a7cffd9f46f6635aap1@LUZP4
4.74e-79FFCP PHASE1:Hg19::chr12:8045012..8045024,+#_fd6a46e51203066a7cffd9f46f6635aap4@NANOGP1
4.74e-79FFCP PHASE2:Hg19::chr3:39268574..39268596,+#_fd6a46e51203066a7cffd9f46f6635aap@chr3:39268574..39268596, +
4.74e-79FFCP PHASE2:Hg19::chr1:27385778..27385789,+#_fd6a46e51203066a7cffd9f46f6635aap@chr1:27385778..27385789, +
4.74e-79FFCP PHASE2:Hg19::chr4:3931902..3931913,+#_fd6a46e51203066a7cffd9f46f6635aap@chr4:3931902..3931913, +
4.74e-79FFCP PHASE1:Hg19::chr3:39268574..39268596,+#_fd6a46e51203066a7cffd9f46f6635aap@chr3:39268574..39268596, +
4.74e-79FFCP PHASE1:Hg19::chr12:118542383..118542415,-#_fd6a46e51203066a7cffd9f46f6635aap@chr12:118542383..118542415, -
4.74e-79FFCP PHASE2:Hg19::chr19:42965112..42965160,+#_fd6a46e51203066a7cffd9f46f6635aap@chr19:42965112..42965160, +
4.74e-79FFCP PHASE2:Hg19::chr11:19838901..19838948,+#_fd6a46e51203066a7cffd9f46f6635aap@chr11:19838901..19838948, +
4.74e-79FFCP PHASE1:Hg19::chr11:19838901..19838948,+#_fd6a46e51203066a7cffd9f46f6635aap@chr11:19838901..19838948, +
4.74e-79FFCP PHASE1:Hg19::chr5:133764015..133764029,+#_fd6a46e51203066a7cffd9f46f6635aap@chr5:133764015..133764029, +
4.74e-79FFCP PHASE1:Hg19::chr7:5447185..5447197,-#_fd6a46e51203066a7cffd9f46f6635aap23@TNRC18
4.74e-79FFCP PHASE1:Hg19::chr1:10476999..10477027,+#_fd6a46e51203066a7cffd9f46f6635aap@chr1:10476999..10477027, +
4.74e-79FFCP PHASE2:Hg19::chr5:133764015..133764029,+#_fd6a46e51203066a7cffd9f46f6635aap@chr5:133764015..133764029, +
4.74e-79FFCP PHASE1:Hg19::chr4:3931902..3931913,+#_fd6a46e51203066a7cffd9f46f6635aap@chr4:3931902..3931913, +
4.74e-79FFCP PHASE2:Hg19::chr12:118542383..118542415,-#_fd6a46e51203066a7cffd9f46f6635aap@chr12:118542383..118542415, -
4.74e-79FFCP PHASE1:Hg19::chr3:47297118..47297149,+#_fd6a46e51203066a7cffd9f46f6635aap@chr3:47297118..47297149, +
4.74e-79FFCP PHASE2:Hg19::chr7:5447185..5447197,-#_fd6a46e51203066a7cffd9f46f6635aap23@TNRC18










Property "Property value" (as page type) with input value "UBPROP:0000001 "Either of paired male reproductive organs which are involved in the production of sperm and male sex hormones.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000001 "Male reproductive organ.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0000473&oldid=3277116"