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<html>
{{Known motif|id=2}}
<title>known motifs</title>
<script type="text/javascript" src="/resource_browser/rb_js/datatables/media/js/jquery.dataTables.min.js"></script>
<style type="text/css" title="currentStyle">
@import "/resource_browser/rb_js/datatables/media/css/jquery.dataTables.css";
</style>
<script type="text/javascript">
 
/* Formating function for row details */
 
$(document).ready(function() {
      $('#example').dataTable( {
        "aaData": [
    {"0":"HOCOMOCO:ZFHX3_f1","1":"HOCOMOCO:ZFHX3_f1"},
{"0":"HOCOMOCO:ARI3A_f1","1":"HOCOMOCO:ARI3A_f1"},
{"0":"HOCOMOCO:HXD9_f1","1":"HOCOMOCO:HXD9_f1"},
{"0":"HOCOMOCO:PDX1_do","1":"HOCOMOCO:PDX1_do"},
{"0":"HOCOMOCO:HXD4_f1","1":"HOCOMOCO:HXD4_f1"},
{"0":"HOCOMOCO:HXC8_f1","1":"HOCOMOCO:HXC8_f1"},
{"0":"HOCOMOCO:LHX3_f1","1":"HOCOMOCO:LHX3_f1"},
{"0":"JASPAR:Nobox;MA0125.1","1":"JASPAR:Nobox;MA0125.1"},
{"0":"JASPAR:Nkx2-5","1":"JASPAR:Nkx2-5"}
        ], 
          "aoColumns": [
            { "sTitle": "motif type","fnRender": function(obj) {
                    var sReturn = obj.aData[ obj.iDataColumn ];
                              sReturn = sReturn.split(":");
      return sReturn[0];
    }
          },
            { "sTitle": "motif name", "fnRender": function ( obj ) {
var sReturn = obj.aData[ obj.iDataColumn ];
var SReturn_org = sReturn ;
                              sReturn = sReturn.split(":");
                      return '<a href=/resource_browser/User:Serkan/test2/'+SReturn_org+'>'+sReturn[1]+'</a>';} }
                      ] 
      } ); 
} );
</script>
 
</head>
<body>
<table cellpadding="0" cellspacing="0" border="0" class="display" id="example"></table>
     
</body>
 
</html>

Latest revision as of 11:58, 22 April 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name  :{{{name}}}
  • db  :{{{representative_motif_db}}}
  • Id  :{{{representative_motif_id}}}
  • name  :{{{representative_motif_name}}}
  • score  :{{{score}}}"{{{score}}}" is not a number.
  • External refs:
EntrezGene:{{{entrez_gene_id}}}
UniProt:{{{entrez_gene_id}}}

  • Internal refs:
[[EntrezGene:{{{entrez_gene_id}}}]]


Motif matrix
{{{PWM}}}

Sub Motif Members

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