NonredundantMotifs:3: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{Known_motif
|entrez_gene_id=23493
|motif_cluster_2013_march_motif_members= /SWISSREGULON:AHR_ARNT_ARNT2.p2~HIF1A.p2~ARNT_ARNT2_BHLHB2_MAX_MYC_USF1.p2~SREBF1,2.p2~bHLH_fam...") |
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{{Known_motif | {{Known_motif | ||
|entrez_gene_id= | |PWM=P0;A;C;G;T!1;49.35073723170061;150.7683740892913;253.09512650745353;45.702811667594396!2;55.39665095234532;177.5259004806322;173.39542471041662;92.59907335264587!3;67.5527924307494;181.64982064577737;232.70337908917296;17.011057330340236!4;37.03304980879144;99.20871780863575;107.466564738888;255.20871713972505!5;423.9836515158341;0.514682110703455;72.87466953739238;1.5440463321103701!6;0.0;498.40236738533685;0.0;0.514682110703455!7;0.0;1.02936422140691;497.3730031639301;0.514682110703455!8;0.0;0.0;0.0;498.91704949604!9;0.0;0.0;498.91704949604;0.0!10;103.88964770479032;294.76191451619604;51.77168729100009;48.493799984054206!11;67.98080621865238;131.67867617287078;232.34384398606207;66.91372311845431!12;31.222632805291347;153.94855506020525;195.21194695602236;118.53391467452127 | ||
|motif_cluster_2013_march_motif_members= / | |entrez_gene_id=3091 | ||
|name= | |motif_cluster_2013_march_motif_members= /HOCOMOCO:USF2_f1~MITF_f1~HEY2_f1~TFE3_f1~HES1_f1~TFEB_f1~USF1_f1~ARNT_f1~BHE40_f2~AHR_si~HIF1A_si~BMAL1_f1~ENOA_si~MYCN_si~MAX_f1~MYC_f1 /HOMER:ATF3_K562-ATF3-ChIP-Seq~BHLHE40_HepG2-BHLHE40-ChIP-Seq~HIF1A_MCF7-HIF1a-ChIP-Seq~USF1_GM12878-Usf1-ChIP-Seq~MYC_LNCAP-cMyc-ChIP-Seq~MYCN_mES-nMyc-ChIP-Seq~MYC_mES-cMyc-ChIP-Seq~MAX_K562-Max-ChIP-Seq /JASPAR:MA0147.1;Myc~MA0004.1;Arnt~MA0104.2;Mycn~MA0059.1;MYC::MAX~MA0058.1;MAX~MA0093.1;USF1~MA0259.1;HIF1A::ARNT~MA0006.1;Arnt::Ahr /SWISSREGULON:ARNT_ARNT2_BHLHB2_MAX_MYC_USF1.p2~HIF1A.p2~HES1.p2~AHR_ARNT_ARNT2.p2~SREBF1,2.p2~TFEB.p2~bHLH_family.p2 /UNIPROBE:Max_secondary;SCI09~Max_primary;SCI09~Bhlhb2_primary;SCI09~Bhlhb2_secondary;SCI09 | ||
|name=non-redundant3 | |||
|representative_motif_db=HOCOMOCO | |representative_motif_db=HOCOMOCO | ||
|representative_motif_id= | |representative_motif_id=HIF1A_si | ||
|representative_motif_name= | |representative_motif_name= | ||
|score= | |score=0.627881956384904 | ||
|uniprot_entry_name= | |uniprot_entry_name=HIF1A_HUMAN | ||
}} | }} | ||
[[Category:Motif]] | [[Category:Motif]] | ||
[[Category:MotifCluster2013March]] | [[Category:MotifCluster2013March]] | ||
[[Category:NonRedundantMotifCluster]] | |||
Latest revision as of 10:21, 30 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :non-redundant3
- db :HOCOMOCO
- Id :HIF1A_si
- name :
- score :0.627881956384904
- External refs:
- Internal refs:
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Sub Motif Members
