NonredundantMotifs:64: Difference between revisions
From FANTOM5_SSTAR
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{{Known_motif | {{Known_motif | ||
|PWM=P0;A;C;G;T!1;16.695511420268414;3.3987427103394747;29.030508988384053;7.875236881008057!2;9.28442662660592;2.3542274038501336;36.375352287649214;8.985993681894705!3;0.7958211858966387;11.870845480770022;0.4973882411853999;43.835945092147924!4;0.0;10.014006318105276;0.9947764823707999;45.991217199523945!5;52.85517492788243;0.4973882411853999;0.7958211858966387;2.851615645035533!6;45.42758746394125;2.6858965024011603;8.389127792472216;0.4973882411853999!7;7.900106293067325;0.3730411808890502;1.8652059044452483;46.86164662159838!8;23.492996840947363;2.2879859094528383;30.721629008414396;0.4973882411853999!9;28.01086309395401;3.2081541556458286;9.24305454426791;16.53792820613228!10;8.621319242786155;0.0;3.846392127406333;44.53228862980749!11;2.83511297475678;6.466047135410193;0.7460823617781027;46.95275752805493!12;32.32977405048646;6.167614190698977;8.322886298074938;10.179725460739682!13;45.26163750802459;2.1885082612157607;2.089030612978683;7.460823617781027!14;6.5157859595287295;38.87856535057267;4.526232994787141;7.0794156951114235 | |||
|entrez_gene_id=6928 | |entrez_gene_id=6928 | ||
|motif_cluster_2013_march_motif_members= / | |motif_cluster_2013_march_motif_members= /HOCOMOCO:HNF1A_f1~HNF1B_f1 /JASPAR:MA0046.1;HNF1A~MA0153.1;HNF1B /SWISSREGULON:HNF1A.p2 | ||
|name= | |name=non-redundant64 | ||
|representative_motif_db=HOCOMOCO | |representative_motif_db=HOCOMOCO | ||
|representative_motif_id=HNF1B_f1 | |representative_motif_id=HNF1B_f1 | ||
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[[Category:Motif]] | [[Category:Motif]] | ||
[[Category:MotifCluster2013March]] | [[Category:MotifCluster2013March]] | ||
[[Category:NonRedundantMotifCluster]] | |||
Latest revision as of 10:21, 30 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :non-redundant64
- db :HOCOMOCO
- Id :HNF1B_f1
- name :
- score :0.19904791015216042
- External refs:
- Internal refs:
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Sub Motif Members
