NonredundantMotifs:72: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{Known_motif
|entrez_gene_id=11279
|motif_cluster_2013_march_motif_members= /SWISSREGULON:DBP.p2 /HOCOMOCO:KLF8_f1 /UNIPROBE:Zscan4_secondary;SCI09~Gm397_secondary;SCI09...") |
m (Autoedit moved page NonredundantMotifs:Motif72 to NonredundantMotifs:72 without leaving a redirect: NSchange) |
||
| (5 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{Known_motif | {{Known_motif | ||
|PWM=P0;A;C;G;T!1;0.0;3.92857142857143;0.0;1.07142857142857!2;3.392857142857145;1.60714285714286;0.0;0.0!3;0.0;0.0;4.464285714285715;0.535714285714285!4;0.0;0.0;3.392857142857145;1.60714285714286!5;0.0;0.0;5.0;0.0!6;0.0;0.0;3.2142857142857153;1.785714285714285!7;0.0;0.0;5.0;0.0!8;0.0;0.535714285714285;0.0;4.464285714285715!9;0.0;0.535714285714285;4.464285714285715;0.0 | |||
|entrez_gene_id=11279 | |entrez_gene_id=11279 | ||
|motif_cluster_2013_march_motif_members= /SWISSREGULON:DBP.p2 | |motif_cluster_2013_march_motif_members= /HOCOMOCO:KLF8_f1 /SWISSREGULON:DBP.p2 /UNIPROBE:Gm397_secondary;SCI09~Zscan4_secondary;SCI09 | ||
|name= | |name=non-redundant72 | ||
|representative_motif_db=HOCOMOCO | |representative_motif_db=HOCOMOCO | ||
|representative_motif_id=KLF8_f1 | |representative_motif_id=KLF8_f1 | ||
| Line 11: | Line 12: | ||
[[Category:Motif]] | [[Category:Motif]] | ||
[[Category:MotifCluster2013March]] | [[Category:MotifCluster2013March]] | ||
[[Category:NonRedundantMotifCluster]] | |||
Latest revision as of 10:21, 30 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :non-redundant72
- db :HOCOMOCO
- Id :KLF8_f1
- name :
- score :0.8161558336152298
- External refs:
- Internal refs:
| Motif matrix | ||||||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Sub Motif Members
