NonredundantMotifs:86: Difference between revisions
From FANTOM5_SSTAR
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|entrez_gene_id=
|motif_cluster_2013_march_motif_members= /SWISSREGULON:HIC1.p2 /HOCOMOCO:HIC1_si /UNIPROBE:Hic1_secondary;SCI09
|name=known86
|representa...") |
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{{Known_motif | {{Known_motif | ||
|entrez_gene_id= | |PWM=P0;A;C;G;T!1;0.204897874897343;0.149950753888391;0.363373255563378;0.281778115650889!2;0.112945913230244;0.243699644851954;0.437937553554237;0.205416888363565!3;0.205232315604922;0.182318733390399;0.383143496346029;0.22930545465865!4;0.242063126030163;0.152490781903701;0.296425994376723;0.309020097689413!5;0.312921551025571;0.0285229180559956;0.585026257014466;0.0735292739039672!6;0.00675352468752789;0.0111778028895601;0.00534573473982521;0.976722937683087!7;0.127589016392269;0.00556162725116544;0.859435540116235;0.00741381624033058!8;0.0100455533423129;0.974694231021875;0.00700073964228847;0.00825947599352394!9;0.0102624745327377;0.97476940344729;0.00606887782492648;0.00889924419504614!10;0.0151223885146539;0.966101419772803;0.00796962805020938;0.0108065636623336!11;0.556510660673005;0.167389239492947;0.114634750142418;0.161465349691631!12;0.58645892034666;0.0447861896647228;0.0734502749979671;0.295304614990651!13;0.297709845125996;0.194665672171834;0.223655324517526;0.283969158184644!14;0.303201578697961;0.25080943853057;0.206474647119874;0.239514335651594!15;0.279337565766586;0.160655267373581;0.314457267246382;0.245549899613451!16;0.266477103035305;0.266890093054894;0.299970355686276;0.166662448223524 | ||
|motif_cluster_2013_march_motif_members= /SWISSREGULON:HIC1.p2 | |entrez_gene_id=3090 | ||
|name= | |motif_cluster_2013_march_motif_members= /HOCOMOCO:HIC1_si /SWISSREGULON:HIC1.p2 /UNIPROBE:Hic1_secondary;SCI09 | ||
|representative_motif_db= | |name=non-redundant86 | ||
|representative_motif_id= | |representative_motif_db=UNIPROBE | ||
|representative_motif_name= | |representative_motif_id=Hic1_secondary | ||
|score= | |representative_motif_name=SCI09 | ||
|uniprot_entry_name= | |score=0.17271721728767128 | ||
|uniprot_entry_name=HIC1_HUMAN | |||
}} | }} | ||
[[Category:Motif]] | [[Category:Motif]] | ||
[[Category:MotifCluster2013March]] | [[Category:MotifCluster2013March]] | ||
[[Category:NonRedundantMotifCluster]] | |||
Latest revision as of 10:21, 30 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :non-redundant86
- db :UNIPROBE
- Id :Hic1_secondary
- name :SCI09
- score :0.17271721728767128
- External refs:
- Internal refs:
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Sub Motif Members
