NonredundantMotifs:88: Difference between revisions
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|entrez_gene_id=30827
|motif_cluster_2013_march_motif_members= /JASPAR:MA0133.1;BRCA1 /HOCOMOCO:BRCA1_f1~CXXC1_si
|name=known88
|representative_motif_db=HO...") |
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{{Known_motif | {{Known_motif | ||
|entrez_gene_id= | |PWM=P0;A;C;G;T!1;10.452921651409689;14.310920735735058;21.0795223142001;26.727048291098647!2;13.750382934951881;0.0;19.992653074424748;38.827376983066934!3;2.0342658299611203;9.08445991003025;11.11872573999137;50.33296151246075!4;4.0685316599222325;25.008581324532763;34.96937789874156;8.523922109247003!5;2.0342658299611203;10.873986802603355;32.724579493183576;26.937580866695445!6;0.0;0.0;63.17015421901801;9.400258773425483!7;0.0;2.0342658299611203;0.0;70.53614716248237!8;0.0;0.0;0.0;72.5704129924435!9;4.577098117412513;5.31396213200145;60.13652045557815;2.5428322874513927 | ||
|motif_cluster_2013_march_motif_members= /JASPAR:MA0133.1; | |entrez_gene_id=672 | ||
|name= | |motif_cluster_2013_march_motif_members= /HOCOMOCO:BRCA1_f1~CXXC1_si /JASPAR:MA0133.1;BRCA1 | ||
|name=non-redundant88 | |||
|representative_motif_db=HOCOMOCO | |representative_motif_db=HOCOMOCO | ||
|representative_motif_id= | |representative_motif_id=BRCA1_f1 | ||
|representative_motif_name= | |representative_motif_name= | ||
|score=0. | |score=0.06605555365236132 | ||
|uniprot_entry_name= | |uniprot_entry_name=BRCA1_HUMAN | ||
}} | }} | ||
[[Category:Motif]] | [[Category:Motif]] | ||
[[Category:MotifCluster2013March]] | [[Category:MotifCluster2013March]] | ||
[[Category:NonRedundantMotifCluster]] | |||
Latest revision as of 10:21, 30 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :non-redundant88
- db :HOCOMOCO
- Id :BRCA1_f1
- name :
- score :0.06605555365236132
- External refs:
- Internal refs:
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Sub Motif Members
