NonredundantMotifs:95: Difference between revisions
From FANTOM5_SSTAR
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|entrez_gene_id=5324
|motif_cluster_2013_march_motif_members= /JASPAR:MA0163.1;PLAG1 /HOCOMOCO:PLAG1_f1
|name=known95
|representative_motif_db=HOCOMOCO
|r...") |
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{{Known_motif | {{Known_motif | ||
|PWM=P0;A;C;G;T!1;5.5;0.5;16.5;2.5!2;5.0;0.0;20.0;0.0!3;10.0;0.0;15.0;0.0!4;0.0;0.0;25.0;0.0!5;0.0;8.0;17.0;0.0!6;1.0;14.000000000000002;7.000000000000001;3.0!7;13.0;9.0;2.0;1.0!8;5.0;8.0;3.0;9.0!9;5.0;8.0;6.0;6.0!10;11.0;2.0;5.0;7.000000000000001!11;8.0;6.0;11.0;0.0!12;4.0;2.0;12.0;7.000000000000001!13;17.0;4.0;3.0;1.0!14;2.0;0.0;20.0;3.0!15;1.0;0.0;24.0;0.0!16;0.0;0.0;25.0;0.0!17;2.0;1.0;17.0;5.0 | |||
|entrez_gene_id=5324 | |entrez_gene_id=5324 | ||
|motif_cluster_2013_march_motif_members= /JASPAR:MA0163.1; | |motif_cluster_2013_march_motif_members= /HOCOMOCO:PLAG1_f1 /JASPAR:MA0163.1;PLAG1 | ||
|name= | |name=non-redundant95 | ||
|representative_motif_db=HOCOMOCO | |representative_motif_db=HOCOMOCO | ||
|representative_motif_id=PLAG1_f1 | |representative_motif_id=PLAG1_f1 | ||
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[[Category:Motif]] | [[Category:Motif]] | ||
[[Category:MotifCluster2013March]] | [[Category:MotifCluster2013March]] | ||
[[Category:NonRedundantMotifCluster]] | |||
Latest revision as of 10:21, 30 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :non-redundant95
- db :HOCOMOCO
- Id :PLAG1_f1
- name :
- score :3.7246016239642246
- External refs:
- Internal refs:
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Sub Motif Members
