NonredundantMotifs:167: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{Known_motif
|entrez_gene_id=
|motif_cluster_2013_march_motif_members= /SWISSREGULON:FOXP3.p2
|name=known167
|representative_motif_db=SWISSREGULON
|representative_motif...") |
No edit summary |
||
| (6 intermediate revisions by one other user not shown) | |||
| Line 1: | Line 1: | ||
{{Known_motif | {{Known_motif | ||
|entrez_gene_id= | |PWM=PO;A;C;G;T!1;33.093759;2.568386;42.454575;1.487499!2;51.430673;8.664028;3.306979;16.202539!3;54.947198;4.568207;16.91955;3.169264!4;27.119889;9.335891;38.80781;4.340629!5;15.395579;3.702614;11.439615;49.066411!6;6.982687;0.982121;53.138368;18.501043!7;1.469805;26.182619;0.785121;51.166674!8;1.470865;4.052472;2.40566;71.675222!9;18.33104;2.501553;49.307033;9.464593!10;5.725867;5.884253;4.46143;63.532669!11;3.325094;16.068643;7.509862;52.70062!12;11.636988;6.653376;8.339676;52.974179!13;2.308951;69.989651;3.210888;4.094729!14;63.15204;1.394317;0;15.057862!15;5.513904;2.385672;41.741118;29.963525!16;59.294445;1.745581;16.882375;1.681818!17;3.727559;42.026756;14.586437;19.263467 | ||
|entrez_gene_id=50943 | |||
|motif_cluster_2013_march_motif_members= /SWISSREGULON:FOXP3.p2 | |motif_cluster_2013_march_motif_members= /SWISSREGULON:FOXP3.p2 | ||
|name= | |name=non-redundant167 | ||
|representative_motif_db=SWISSREGULON | |representative_motif_db=SWISSREGULON | ||
|representative_motif_id=FOXP3.p2 | |representative_motif_id=FOXP3.p2 | ||
|representative_motif_name= | |representative_motif_name=FOXP3 | ||
|score=0.11332724732182542 | |score=0.11332724732182542 | ||
|uniprot_entry_name= | |uniprot_entry_name=FOXP3 | ||
}} | }} | ||
[[Category:Motif]] | [[Category:Motif]] | ||
[[Category:MotifCluster2013March]] | [[Category:MotifCluster2013March]] | ||
[[Category:NonRedundantMotifCluster]] | |||
Latest revision as of 15:54, 31 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :non-redundant167
- db :SWISSREGULON
- Id :FOXP3.p2
- name :FOXP3
- score :0.11332724732182542
- External refs:
- Internal refs:
| Motif matrix | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Sub Motif Members
