NonredundantMotifs:11: Difference between revisions
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{{Known_motif | {{Known_motif | ||
|PWM=P0;A;C;G;T!1;94;317;320;126!2;101;166;127;464!3;390;23;368;79!4;100;3;671;87!5;139;15;674;34!6;145;129;395;193!7;71;547;179;66!8;819;21;15;8!9;522;48;270;23!10;713;5;137;9!11;82;2;767;12!12;41;9;693;120!13;22;99;263;479!14;54;555;144;109!15;676;58;47;81 | |||
|entrez_gene_id=5468,6256 | |entrez_gene_id=5468,6256 | ||
|motif_cluster_2013_march_motif_members= / | |motif_cluster_2013_march_motif_members= /HOCOMOCO:RXRG_f1~HNF4G_f1~NR1H2_f1~NR2F6_f1~HNF4A_f1~NR2C2_f1~COT2_f2~PPARD_f1~PPARG_f1~COT1_f1~PPARA_f2~RXRA_f1 /HOMER:HNF4A_HepG2-HNF4a-ChIP-Seq~RXRA,RXRB,RXRG_3T3L1-RXR-ChIP-Seq~PPARG_3T3L1-Pparg-ChIP-Seq~NR2C2_Hela-TR4-ChIP-Seq /JASPAR:MA0065.2;PPARG::RXRA~MA0017.1;NR2F1~MA0115.1;NR1H2::RXRA~MA0114.1;HNF4A /SWISSREGULON:HNF4A_NR2F1,2.p2~RXRG_dimer.p3 /UNIPROBE:Hnf4a_secondary;SCI09 | ||
|name= | |name=non-redundant11 | ||
|representative_motif_db=JASPAR | |representative_motif_db=JASPAR | ||
|representative_motif_id=MA0065.2 | |representative_motif_id=MA0065.2 | ||
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[[Category:Motif]] | [[Category:Motif]] | ||
[[Category:MotifCluster2013March]] | [[Category:MotifCluster2013March]] | ||
[[Category:NonRedundantMotifCluster]] | |||
Latest revision as of 10:21, 30 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :non-redundant11
- db :JASPAR
- Id :MA0065.2
- name :PPARG::RXRA
- score :0.40344014069097944
- External refs:
- Internal refs:
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Sub Motif Members
