NonredundantMotifs:22: Difference between revisions
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{{Known_motif | {{Known_motif | ||
|PWM=P0;A;C;G;T!1;0.452790685382596;0.238472502367781;0.150607963167503;0.15812884908212!2;0.126444202625904;0.0940122740755787;0.487075813557476;0.292467709741041!3;0.434627435132116;0.239256199886739;0.156125493838153;0.169990871142993!4;0.155277836462267;0.149228013587864;0.515564824923915;0.179929325025954!5;0.0222658998560708;0.469313799049504;0.0592401242927527;0.449180176801673!6;0.0150357867265764;0.363659944262162;0.45159396411303;0.169710304898231!7;0.0451886000259906;0.0997597759314082;0.821515705127828;0.0335359189147732!8;0.00776280084908986;0.00985731701193892;0.907047486281808;0.0753323958571634!9;0.0134527602102177;0.00395188759757316;0.903170443044843;0.0794249091473659!10;0.0407142250402703;0.0273708009069133;0.0279965049673275;0.903918469085489!11;0.017022968201438;0.852074842896406;0.0396557342304163;0.0912464546717396!12;0.801114499925933;0.00439081139945169;0.164886133951546;0.0296085547230698!13;0.394694584614395;0.235752140477909;0.182579862336018;0.186973412571678!14;0.0876540913824464;0.156911410725238;0.450590709112785;0.304843788779531!15;0.118927067859795;0.222730319934294;0.284209582007194;0.374133030198716!16;0.308787276712257;0.296358210904117;0.19786822363726;0.196986288746366 | |||
|entrez_gene_id=5914 | |entrez_gene_id=5914 | ||
|motif_cluster_2013_march_motif_members= /JASPAR:MA0072.1;RORA_2 / | |motif_cluster_2013_march_motif_members= /HOCOMOCO:NR1D1_f1~NR1H4_f1~RORG_f1~RORA_f1 /HOMER:NR1H4_Liver-FXR-ChIP-Seq /JASPAR:MA0072.1;RORA_2 /SWISSREGULON:NR1H4.p2~RXR(A,B,G).p2~RORA.p2 /UNIPROBE:Esrra_secondary;SCI09~Hnf4a_primary;SCI09~Rara_secondary;SCI09~Rxra_primary;SCI09~Nr2f2_secondary;SCI09 | ||
|name= | |name=non-redundant22 | ||
|representative_motif_db=UNIPROBE | |representative_motif_db=UNIPROBE | ||
|representative_motif_id=Rara_secondary | |representative_motif_id=Rara_secondary | ||
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[[Category:Motif]] | [[Category:Motif]] | ||
[[Category:MotifCluster2013March]] | [[Category:MotifCluster2013March]] | ||
[[Category:NonRedundantMotifCluster]] | |||
Latest revision as of 10:21, 30 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :non-redundant22
- db :UNIPROBE
- Id :Rara_secondary
- name :SCI09
- score :0.868119759774104
- External refs:
- Internal refs:
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Sub Motif Members
