Personal tools

NonredundantMotifs:43: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
m (Autoedit moved page NonredundantMotifs:Motif43 to NonredundantMotifs:43 without leaving a redirect: NSchange)
 
(4 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{Known_motif
{{Known_motif
|PWM=P0;A;C;G;T!1;6.958208;268.692007;35.78313;18.871575!2;207.232686;52.653478;57.509645;12.909111!3;120.000732;70.577211;44.653625;95.073352!4;4.952151;152.757733;54.588655;118.006381!5;24.774256;11.933058;2.953644;290.643962!6;0;313.415701;0;16.889219!7;0;330.30492;0;0!8;0;328.311068;0;1.993852!9;296.581291;0;22.792986;10.930643!10;14.833301;27.722328;259.049534;28.699757!11;118.14522;128.968678;83.191022;0!12;229.053256;18.905325;75.448882;6.897457!13;23.776912;10.916331;46.61576;248.995917!14;28.858041;31.713098;240.87422;28.859561!15;0;325.341335;2.968624;1.994961!16;78.282615;171.630416;4.977524;75.414365!17;40.623781;155.774489;49.643717;84.262933!18;10.949598;183.332675;6.927346;129.095301!19;15.880708;5.969678;297.525443;10.929091!20;14.862284;264.817496;44.653755;5.971385
|PWM=P0;A;C;G;T!1;6.958208;268.692007;35.78313;18.871575!2;207.232686;52.653478;57.509645;12.909111!3;120.000732;70.577211;44.653625;95.073352!4;4.952151;152.757733;54.588655;118.006381!5;24.774256;11.933058;2.953644;290.643962!6;0;313.415701;0;16.889219!7;0;330.30492;0;0!8;0;328.311068;0;1.993852!9;296.581291;0;22.792986;10.930643!10;14.833301;27.722328;259.049534;28.699757!11;118.14522;128.968678;83.191022;0!12;229.053256;18.905325;75.448882;6.897457!13;23.776912;10.916331;46.61576;248.995917!14;28.858041;31.713098;240.87422;28.859561!15;0;325.341335;2.968624;1.994961!16;78.282615;171.630416;4.977524;75.414365!17;40.623781;155.774489;49.643717;84.262933!18;10.949598;183.332675;6.927346;129.095301!19;15.880708;5.969678;297.525443;10.929091!20;14.862284;264.817496;44.653755;5.971385
|entrez_gene_id=
|entrez_gene_id=ZNF143
|motif_cluster_2013_march_motif_members= /SWISSREGULON:IKZF1.p2~ZNF143.p2~RBPJ.p2 /JASPAR:MA0088.1;znf143 /HOMER:ZNF143_CUTLL-ZNF143-ChIP-Seq(GSE29600) /HOCOMOCO:SUH_f1~IKZF1_f1~ZN143_si
|motif_cluster_2013_march_motif_members= /HOCOMOCO:ZN143_si~IKZF1_f1~SUH_f1 /HOMER:ZNF143_CUTLL-ZNF143-ChIP-Seq(GSE29600) /JASPAR:MA0088.1;znf143 /SWISSREGULON:ZNF143.p2~RBPJ.p2~IKZF1.p2
|name=known43
|name=non-redundant43
|representative_motif_db=SWISSREGULON
|representative_motif_db=SWISSREGULON
|representative_motif_id=ZNF143.p2
|representative_motif_id=ZNF143.p2
|representative_motif_name=  
|representative_motif_name=ZNF143
|score=0.8620777319425877
|score=0.8620777319425877
|uniprot_entry_name=
|uniprot_entry_name=ZNF143
}}
}}
[[Category:Motif]]
[[Category:Motif]]
[[Category:MotifCluster2013March]]
[[Category:MotifCluster2013March]]
[[Category:NonRedundantMotifCluster]]

Latest revision as of 10:21, 30 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant43
  • db :SWISSREGULON
  • Id :ZNF143.p2
  • name :ZNF143
  • score :0.8620777319425877
  • External refs:
EntrezGene:ZNF143
UniProt:ZNF143

  • Internal refs:
EntrezGene:ZNF143


Motif matrix
P0ACGT
16.958208268.69200735.7831318.871575
2207.23268652.65347857.50964512.909111
3120.00073270.57721144.65362595.073352
44.952151152.75773354.588655118.006381
524.77425611.9330582.953644290.643962
60313.415701016.889219
70330.3049200
80328.31106801.993852
9296.581291022.79298610.930643
1014.83330127.722328259.04953428.699757
11118.14522128.96867883.1910220
12229.05325618.90532575.4488826.897457
1323.77691210.91633146.61576248.995917
1428.85804131.713098240.8742228.859561
150325.3413352.9686241.994961
1678.282615171.6304164.97752475.414365
1740.623781155.77448949.64371784.262933
1810.949598183.3326756.927346129.095301
1915.8807085.969678297.52544310.929091
2014.862284264.81749644.6537555.971385

Sub Motif Members