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NonredundantMotifs:60: Difference between revisions

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|PWM=P0;A;C;G;T!1;0.243560873779728;0.194936424040099;0.123150164526517;0.438352537653656!2;0.606538176187487;0.159877538988805;0.0564757758785554;0.177108508945152!3;0.460255875416143;0.141315149263762;0.21523669767678;0.183192277643315!4;0.134433946276435;0.0335083587576954;0.0533043312114166;0.778753363754453!5;0.0913329656210277;0.0199660749055727;0.02070421097705;0.86799674849635!6;0.136283897033399;0.75357132294826;0.0625595514301641;0.0475852285881772!7;0.917109030788599;0.0314752088291793;0.0154716083484512;0.0359441520337709!8;0.45224393408727;0.0848898746039908;0.121698049569224;0.341168141739516!9;0.0359441520337709;0.0154716083484512;0.0314752088291793;0.917109030788599!10;0.0475852285881772;0.0625595514301641;0.75357132294826;0.136283897033399!11;0.86799674849635;0.02070421097705;0.0199660749055727;0.0913329656210277!12;0.778753363754453;0.0533043312114166;0.0335083587576954;0.134433946276435!13;0.123705118684704;0.284125306656146;0.35336127856272;0.23880829609643!14;0.291281741118567;0.126574394207746;0.120737413447174;0.461406451226514!15;0.33062606243941;0.0625648081539657;0.348868388592034;0.25794074081459
|PWM=P0;A;C;G;T!1;0.243560873779728;0.194936424040099;0.123150164526517;0.438352537653656!2;0.606538176187487;0.159877538988805;0.0564757758785554;0.177108508945152!3;0.460255875416143;0.141315149263762;0.21523669767678;0.183192277643315!4;0.134433946276435;0.0335083587576954;0.0533043312114166;0.778753363754453!5;0.0913329656210277;0.0199660749055727;0.02070421097705;0.86799674849635!6;0.136283897033399;0.75357132294826;0.0625595514301641;0.0475852285881772!7;0.917109030788599;0.0314752088291793;0.0154716083484512;0.0359441520337709!8;0.45224393408727;0.0848898746039908;0.121698049569224;0.341168141739516!9;0.0359441520337709;0.0154716083484512;0.0314752088291793;0.917109030788599!10;0.0475852285881772;0.0625595514301641;0.75357132294826;0.136283897033399!11;0.86799674849635;0.02070421097705;0.0199660749055727;0.0913329656210277!12;0.778753363754453;0.0533043312114166;0.0335083587576954;0.134433946276435!13;0.123705118684704;0.284125306656146;0.35336127856272;0.23880829609643!14;0.291281741118567;0.126574394207746;0.120737413447174;0.461406451226514!15;0.33062606243941;0.0625648081539657;0.348868388592034;0.25794074081459
|entrez_gene_id=56987
|entrez_gene_id=56987
|motif_cluster_2013_march_motif_members= /UNIPROBE:Hbp1_primary;SCI09~Sox1_primary;SCI09~Bbx_primary;SCI09 /HOCOMOCO:LHX2_f1~HBP1_f1
|motif_cluster_2013_march_motif_members= /HOCOMOCO:LHX2_f1~HBP1_f1 /UNIPROBE:Bbx_primary;SCI09~Sox1_primary;SCI09~Hbp1_primary;SCI09
|name=known60
|name=non-redundant60
|representative_motif_db=UNIPROBE
|representative_motif_db=UNIPROBE
|representative_motif_id=Bbx_primary
|representative_motif_id=Bbx_primary
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[[Category:Motif]]
[[Category:Motif]]
[[Category:MotifCluster2013March]]
[[Category:MotifCluster2013March]]
[[Category:NonRedundantMotifCluster]]

Latest revision as of 10:21, 30 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant60
  • db :UNIPROBE
  • Id :Bbx_primary
  • name :SCI09
  • score :0.07688020615335647
  • External refs:
EntrezGene:56987
UniProt:56987

  • Internal refs:
EntrezGene:56987


Motif matrix
P0ACGT
10.2435608737797280.1949364240400990.1231501645265170.438352537653656
20.6065381761874870.1598775389888050.05647577587855540.177108508945152
30.4602558754161430.1413151492637620.215236697676780.183192277643315
40.1344339462764350.03350835875769540.05330433121141660.778753363754453
50.09133296562102770.01996607490557270.020704210977050.86799674849635
60.1362838970333990.753571322948260.06255955143016410.0475852285881772
70.9171090307885990.03147520882917930.01547160834845120.0359441520337709
80.452243934087270.08488987460399080.1216980495692240.341168141739516
90.03594415203377090.01547160834845120.03147520882917930.917109030788599
100.04758522858817720.06255955143016410.753571322948260.136283897033399
110.867996748496350.020704210977050.01996607490557270.0913329656210277
120.7787533637544530.05330433121141660.03350835875769540.134433946276435
130.1237051186847040.2841253066561460.353361278562720.23880829609643
140.2912817411185670.1265743942077460.1207374134471740.461406451226514
150.330626062439410.06256480815396570.3488683885920340.25794074081459

Sub Motif Members

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