NonredundantMotifs:172: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| (3 intermediate revisions by one other user not shown) | |||
| Line 1: | Line 1: | ||
{{Known_motif | {{Known_motif | ||
|PWM=PO;A;C;G;T!1;0.678277;9.171949;6.371559;69.834135!2;3.059487;0;82.996433;0!3;1.570606;79.489634;1.680026;3.315654!4;4.944468;5.793577;73.281977;2.035898!5;3.36156;73.2695;3.059487;6.365373!6;15.416782;7.242432;29.630338;33.766368!7;1.589441;0.680838;8.937115;74.848526!8;25.074942;55.732074;3.136795;2.112109!9;1.51878;11.452488;0;73.084652!10;78.435319;0;3.465387;4.155214!11;0;28.031803;0;58.024117!12;78.309813;1.670628;1.709443;4.366036 | |PWM=PO;A;C;G;T!1;0.678277;9.171949;6.371559;69.834135!2;3.059487;0;82.996433;0!3;1.570606;79.489634;1.680026;3.315654!4;4.944468;5.793577;73.281977;2.035898!5;3.36156;73.2695;3.059487;6.365373!6;15.416782;7.242432;29.630338;33.766368!7;1.589441;0.680838;8.937115;74.848526!8;25.074942;55.732074;3.136795;2.112109!9;1.51878;11.452488;0;73.084652!10;78.435319;0;3.465387;4.155214!11;0;28.031803;0;58.024117!12;78.309813;1.670628;1.709443;4.366036 | ||
|entrez_gene_id= | |entrez_gene_id=64412 | ||
|motif_cluster_2013_march_motif_members= /SWISSREGULON:GZF1.p2 | |motif_cluster_2013_march_motif_members= /SWISSREGULON:GZF1.p2 | ||
|name=non-redundant172 | |name=non-redundant172 | ||
Latest revision as of 15:54, 31 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :non-redundant172
- db :SWISSREGULON
- Id :GZF1.p2
- name :GZF1
- score :0.02784379488307328
- External refs:
- Internal refs:
| Motif matrix | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Sub Motif Members
