NonredundantMotifs:122: Difference between revisions
From FANTOM5_SSTAR
m (Autoedit moved page MotifCluster2013March:Known122 to MotifCluster2013March:Non redundant122 without leaving a redirect: NSchange) |
No edit summary |
||
| (2 intermediate revisions by one other user not shown) | |||
| Line 1: | Line 1: | ||
{{Known_motif | {{Known_motif | ||
|PWM=PO;A;C;G;T!1;0;0;105;0!2;2;0;103;0!3;104;0;1;0!4;104;0;1;0!5;1;0;104;0!6;2;0;102;1!7;103;0;2;0!8;102;0;3;0!9;0;0;104;1!10;0;2;103;0!11;99;4;2;0!12;105;0;0;0!13;0;0;105;0!14;0;2;103;0!15;100;3;0;2!16;102;0;2;1!17;5;0;97;3!18;3;3;97;2 | |PWM=PO;A;C;G;T!1;0;0;105;0!2;2;0;103;0!3;104;0;1;0!4;104;0;1;0!5;1;0;104;0!6;2;0;102;1!7;103;0;2;0!8;102;0;3;0!9;0;0;104;1!10;0;2;103;0!11;99;4;2;0!12;105;0;0;0!13;0;0;105;0!14;0;2;103;0!15;100;3;0;2!16;102;0;2;1!17;5;0;97;3!18;3;3;97;2 | ||
|entrez_gene_id= | |entrez_gene_id=2130,2313 | ||
|motif_cluster_2013_march_motif_members= /JASPAR:MA0149.1;EWSR1-FLI1 /SWISSREGULON:EWSR1-FLI1.p2 | |motif_cluster_2013_march_motif_members= /JASPAR:MA0149.1;EWSR1-FLI1 /SWISSREGULON:EWSR1-FLI1.p2 | ||
|name=non-redundant122 | |name=non-redundant122 | ||
Latest revision as of 15:49, 31 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :non-redundant122
- db :SWISSREGULON
- Id :EWSR1-FLI1.p2
- name :EWSR1-FLI1
- score :0.050506215753953636
- External refs:
- Internal refs:
| Motif matrix | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Sub Motif Members
