FFCP PHASE1:Hg19::chr6:31560729..31560768,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr6:31560729..31560768,-
|short_description=p1@NCR3
|description=CAGE_peak_1_at_NCR3_5end
|association_with_transcript=0bp_to_ENST00000340027,ENST00000376072,E...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=259197 | |EntrezGene=259197 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=19077 | |HGNC=19077 | ||
|TSSclassifier=strong | |||
|UniProt=O14931,Q05D23 | |UniProt=O14931,Q05D23 | ||
|association_with_transcript=0bp_to_ENST00000340027,ENST00000376072,ENST00000376073,ENST00000491161,NM_001145466,NM_001145467,NM_147130,uc003nuv.2,uc003nuw.2,uc003nux.1_5end | |||
|cluster_id=chr6:31560729..31560768,- | |||
|coexpression_cluster_id=C2055 | |||
|description=CAGE_peak_1_at_NCR3_5end | |||
|id=chr6:31560729..31560768,- | |||
|ontology_enrichment_celltype=CL:0000838!3.17e-42!52;CL:0000542!4.15e-41!53;CL:0000051!4.15e-41!53;CL:0000037!1.10e-35!172;CL:0000566!1.10e-35!172;CL:0000988!3.58e-32!182;CL:0002032!2.25e-31!165;CL:0000837!2.25e-31!165;CL:0000738!1.79e-29!140;CL:0000791!4.26e-23!18;CL:0000789!4.26e-23!18;CL:0002420!4.26e-23!18;CL:0002419!4.26e-23!18;CL:0000790!4.26e-23!18;CL:0002087!2.44e-22!119;CL:0002031!5.06e-21!124;CL:0000084!2.01e-20!25;CL:0000827!2.01e-20!25;CL:0000945!1.14e-18!24;CL:0000826!1.14e-18!24;CL:0000625!1.87e-15!11;CL:0000236!1.03e-13!14;CL:0000624!6.96e-08!6 | |||
|ontology_enrichment_celltype_v019=CL:0000542;4.60e-36;53!CL:0000791;6.53e-36;18!CL:0000789;6.53e-36;18!CL:0002419;6.53e-36;18!CL:0000084;2.53e-30;25!CL:0000945;1.86e-27;24!CL:0000625;1.05e-23;11!CL:0000236;4.34e-20;13!CL:0000624;1.29e-11;6!CL:0002087;2.85e-10;104!CL:0000623;3.00e-08;3!CL:0000767;2.21e-07;3!CL:0000226;3.15e-07;3!CL:0000842;3.15e-07;3!CL:0000898;4.10e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000838,8.96e-64,52;CL:0000542,2.54e-62,53;CL:0000051,2.54e-62,53;CL:0000791,5.82e-36,18;CL:0000789,5.82e-36,18;CL:0002420,5.82e-36,18;CL:0002419,5.82e-36,18;CL:0000790,5.82e-36,18;CL:0002087,1.09e-31,115;CL:0000738,1.28e-31,136;CL:0000084,2.39e-30,25;CL:0000827,2.39e-30,25;CL:0000037,1.29e-28,168;CL:0000945,1.80e-27,24;CL:0000826,1.80e-27,24;CL:0000988,2.43e-26,177;CL:0002032,2.27e-25,161;CL:0000837,2.27e-25,161;CL:0002031,2.61e-25,120;CL:0000625,1.00e-23,11;CL:0000236,1.54e-21,14;CL:0000624,1.20e-11,6;CL:0000623,3.03e-08,3;CL:0000825,3.03e-08,3;CL:0000767,2.21e-07,3;CL:0000226,3.12e-07,3;CL:0000842,3.12e-07,3;CL:0000898,4.19e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000051;4.60e-36;53!CL:0000790;6.53e-36;18 | |||
|ontology_enrichment_disease=DOID:2531!1.76e-07!51;DOID:0060083!1.76e-07!51 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!1.52e-11!15;UBERON:0000179!1.52e-11!15;UBERON:0000463!1.52e-11!15;UBERON:0007023!2.22e-07!115 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;2.96e-18;15!UBERON:0000179;2.96e-18;15!UBERON:0000463;2.96e-18;15!UBERON:0002390;1.08e-11;32!UBERON:0002193;4.73e-08;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,2.90e-18,15;UBERON:0000179,2.90e-18,15;UBERON:0000463,2.90e-18,15;UBERON:0004177,4.90e-10,7;UBERON:0005057,4.90e-10,7;UBERON:0002370,1.39e-08,4;UBERON:0005058,1.39e-08,4;UBERON:0009113,1.39e-08,4;UBERON:0003295,1.39e-08,4;UBERON:0005562,1.39e-08,4 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.2857764471619,3.11982239909794,3.7781175030566,14.5544782434094,16.1208347200829,9.28896739896456,0,0,0,1.16200800870452,0.284338464974843,0,5.53995408531877,6.61796676651468,8.89744569934992,0,1.6194683300949,0.515151135268373,0,0.755751887377619,0,0,0,0.619412741790207,0,0.256160706529101,0,0,0,0,0,0,0,0,0,0,0.329851300186716,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.285012743741249,0.19891667719909,0,19.3595868907455,16.9302969491261,27.5747868697702,20.4830506831923,18.0178194166206,22.4153451582248,25.1197051658248,21.9432363543134,18.2148150115023,18.79159005987,18.349114950011,0,6.1655941927969,0,2.360517241366,2.75107533924415,1.64481199199607,88.4416560616687,6.19252306603822,8.5220605032252,3.89653456815823,15.374643050154,10.900418576569,11.2982286237647,8.12411591295047,19.5979719180283,23.2806232132182,35.6830252989977,51.6774533259536,28.9803085735052,1.03800594213442,1.60524496853828,0,37.0521550621041,12.2630557952615,6.52892146416997,4.80737414837055,10.8312240870193,15.626002892554,22.810849066761,12.9494602406885,15.9983263943023,31.2326816380865,13.0227488624209,19.7070719261051,24.7976294166421,38.7788283886086,11.1514790989755,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0.392937226493138,0,0,0,0,0,0.238490624305342,1.14398982156026,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.87780264148325,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.982827216677626,0.590789906681404,0.441463099414651,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.968532774145487,0.829312462163088,0,0.25248486685276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,103.342502762032,34.0863215149334,41.1848667981678,35.0376489043713,0,0,0,0,0,0,0,0.414415513436035,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13.0263856457419,9.70713903683776,10.1391179913272,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.261435451024901,0,0,0,0.412164046590889,0,0,0,0,0,0,0,0,0,0,0,0.0852266274161009,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0.422215270595328,0,0,0,0,0,0,0.188287601553558,0,0,0,0,9.13405696617905,6.88173486428138,7.97506062043828,6.67048971281809,16.0431286503616,7.13320642311989,9.18053443304795,11.8968776444141,0,0,0,0,0,0.142283686696828,0,4.98948428582042,1.7235483311913,0.635020748171649,0,0.561594356226918,0,0.156679895773023,0,0.50787533340481,0.963528450622197,0,0,0,0,0,0,0,2.50565556505718,0,0,6.99451132795422,2.81974010175699,0,0.586032717087576,0,0,0,0,0.296964680832639,0,0,0,0,0,0,0,3.31540698637377,0,0,0,0,0,0,0,0.197286811273867,16.7638164642858,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.31900115973192,0,0.533034776018635,10.2193298195736,0.470940769185074,0.664846727600626,0,0.392125068635479,0.335643173951685,0,0.317873157960757,0,0,0,0,0,0.176915129006678,0,0,0,0,0,0,0,0,0,0,0,2.41981432097328,0,0.252746318513952,0,0,0,0,0,0,0,0,0,0,0,0.52418000472609,0,0,0,0,0.484945082442097,0,0,0,0,0.0633107959558787,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,1.6087933092499,0,0,0,0,0,0,0,0,0,0.0788057072991982,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0.082092520749339,0,0.113312091520126,0.439656701034247,0,0,0,0,0,1.06787412567695,0,1.24271716604159,1.9846640872478,0,1.58330377895165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.779441235357554,0.398594520940089,0.327130788511688,0,0,0,4.59971010466339,0.106691729694141,0,0,0,0,0.622077260032973,0,0,0,0,0.509197589862076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.376051641746286,0,0.781514011233092,0,0,0,0.0675375846183947,0,0,0.0634158101939068,0,0,0.496211178389294,0,0,0,0,0,0,0.354809480650555,1.38280785066935,0,0,0,0,0,0.313972371402056,0,0,0,0,0,0.142953088353313,0,0,0,0,0,0,0,0.430227358820278,0,0,0.423387050190929,0,0,0,0,0,0,0,0.102662806856247,0,0,0,0,0,0,0,0,0.385870790539723,1.09279780251979,0,0,0,0,0,0,0,5.92098683273078,3.22289439867886,0,0,0,0,0,2.75237570042724,0,0,0,0,1.0580536810308,0,0,0,0,0,0,0,0,0,0,0.227336094654718,0,0,0,0.639701945702943,0,1.0980114672121,1.30356900021302,0,0,0,0,0,3.90641907484608,0.358611026963382,0,0,0,0,0,0,0.244482888365733,0,0,4.83057104618463,1.60284246151616 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.2857764471619,3.11982239909794,3.7781175030566,14.5544782434094,16.1208347200829,9.28896739896456,0,0,0,1.16200800870452,0.284338464974843,0,5.53995408531877,6.61796676651468,8.89744569934992,0,1.6194683300949,0.515151135268373,0,0.755751887377619,0,0,0,0.619412741790207,0,0.256160706529101,0,0,0,0,0,0,0,0,0,0,0.329851300186716,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.285012743741249,0.19891667719909,0,19.3595868907455,16.9302969491261,27.5747868697702,20.4830506831923,18.0178194166206,22.4153451582248,25.1197051658248,21.9432363543134,18.2148150115023,18.79159005987,18.349114950011,0,6.1655941927969,0,2.360517241366,2.75107533924415,1.64481199199607,88.4416560616687,6.19252306603822,8.5220605032252,3.89653456815823,15.374643050154,10.900418576569,11.2982286237647,8.12411591295047,19.5979719180283,23.2806232132182,35.6830252989977,51.6774533259536,28.9803085735052,1.03800594213442,1.60524496853828,0,37.0521550621041,12.2630557952615,6.52892146416997,4.80737414837055,10.8312240870193,15.626002892554,22.810849066761,12.9494602406885,15.9983263943023,31.2326816380865,13.0227488624209,19.7070719261051,24.7976294166421,38.7788283886086,11.1514790989755,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0.392937226493138,0,0,0,0,0,0.238490624305342,1.14398982156026,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.87780264148325,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.982827216677626,0.590789906681404,0.441463099414651,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.968532774145487,0.829312462163088,0,0.25248486685276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,103.342502762032,34.0863215149334,41.1848667981678,35.0376489043713,0,0,0,0,0,0,0,0.414415513436035,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13.0263856457419,9.70713903683776,10.1391179913272,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.261435451024901,0,0,0,0.412164046590889,0,0,0,0,0,0,0,0,0,0,0,0.0852266274161009,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0.422215270595328,0,0,0,0,0,0,0.188287601553558,0,0,0,0,9.13405696617905,6.88173486428138,7.97506062043828,6.67048971281809,16.0431286503616,7.13320642311989,9.18053443304795,11.8968776444141,0,0,0,0,0,0.142283686696828,0,4.98948428582042,1.7235483311913,0.635020748171649,0,0.561594356226918,0,0.156679895773023,0,0.50787533340481,0.963528450622197,0,0,0,0,0,0,0,2.50565556505718,0,0,6.99451132795422,2.81974010175699,0,0.586032717087576,0,0,0,0,0.296964680832639,0,0,0,0,0,0,0,3.31540698637377,0,0,0,0,0,0,0,0.197286811273867,16.7638164642858,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.31900115973192,0,0.533034776018635,10.2193298195736,0.470940769185074,0.664846727600626,0,0.392125068635479,0.335643173951685,0,0.317873157960757,0,0,0,0,0,0.176915129006678,0,0,0,0,0,0,0,0,0,0,0,2.41981432097328,0,0.252746318513952,0,0,0,0,0,0,0,0,0,0,0,0.52418000472609,0,0,0,0,0.484945082442097,0,0,0,0,0.0633107959558787,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,1.6087933092499,0,0,0,0,0,0,0,0,0,0.0788057072991982,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0.082092520749339,0,0.113312091520126,0.439656701034247,0,0,0,0,0,1.06787412567695,0,1.24271716604159,1.9846640872478,0,1.58330377895165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.779441235357554,0.398594520940089,0.327130788511688,0,0,0,4.59971010466339,0.106691729694141,0,0,0,0,0.622077260032973,0,0,0,0,0.509197589862076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.376051641746286,0,0.781514011233092,0,0,0,0.0675375846183947,0,0,0.0634158101939068,0,0,0.496211178389294,0,0,0,0,0,0,0.354809480650555,1.38280785066935,0,0,0,0,0,0.313972371402056,0,0,0,0,0,0.142953088353313,0,0,0,0,0,0,0,0.430227358820278,0,0,0.423387050190929,0,0,0,0,0,0,0,0.102662806856247,0,0,0,0,0,0,0,0,0.385870790539723,1.09279780251979,0,0,0,0,0,0,0,5.92098683273078,3.22289439867886,0,0,0,0,0,2.75237570042724,0,0,0,0,1.0580536810308,0,0,0,0,0,0,0,0,0,0,0.227336094654718,0,0,0,0.639701945702943,0,1.0980114672121,1.30356900021302,0,0,0,0,0,3.90641907484608,0.358611026963382,0,0,0,0,0,0,0.244482888365733,0,0,4.83057104618463,1.60284246151616 | ||
|short_description=p1@NCR3 | |||
}} | }} |
Latest revision as of 22:10, 17 September 2015
Short description: | p1@NCR3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_NCR3_5end |
Coexpression cluster: | C2055_NK_CD4_Natural_CD8_CD19_blood_Whole |
Association with transcript: | 0bp_to_ENST00000340027, ENST00000376072, ENST00000376073, ENST00000491161, NM_001145466, NM_001145467, NM_147130, uc003nuv.2, uc003nuw.2, uc003nux.1_5end |
EntrezGene: | NCR3 |
HGNC: | 19077 |
UniProt: | O14931Q05D23 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphoid lineage restricted progenitor cell | 8.96e-64 | 52 |
lymphocyte | 2.54e-62 | 53 |
common lymphoid progenitor | 2.54e-62 | 53 |
mature alpha-beta T cell | 5.82e-36 | 18 |
alpha-beta T cell | 5.82e-36 | 18 |
immature T cell | 5.82e-36 | 18 |
mature T cell | 5.82e-36 | 18 |
immature alpha-beta T cell | 5.82e-36 | 18 |
nongranular leukocyte | 1.09e-31 | 115 |
leukocyte | 1.28e-31 | 136 |
T cell | 2.39e-30 | 25 |
pro-T cell | 2.39e-30 | 25 |
hematopoietic stem cell | 1.29e-28 | 168 |
lymphocyte of B lineage | 1.80e-27 | 24 |
pro-B cell | 1.80e-27 | 24 |
hematopoietic cell | 2.43e-26 | 177 |
hematopoietic oligopotent progenitor cell | 2.27e-25 | 161 |
hematopoietic multipotent progenitor cell | 2.27e-25 | 161 |
hematopoietic lineage restricted progenitor cell | 2.61e-25 | 120 |
CD8-positive, alpha-beta T cell | 1.00e-23 | 11 |
B cell | 1.54e-21 | 14 |
CD4-positive, alpha-beta T cell | 1.20e-11 | 6 |
natural killer cell | 3.03e-08 | 3 |
pro-NK cell | 3.03e-08 | 3 |
basophil | 2.21e-07 | 3 |
single nucleate cell | 3.12e-07 | 3 |
mononuclear cell | 3.12e-07 | 3 |
naive T cell | 4.19e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
blood | 2.90e-18 | 15 |
haemolymphatic fluid | 2.90e-18 | 15 |
organism substance | 2.90e-18 | 15 |
hemopoietic organ | 4.90e-10 | 7 |
immune organ | 4.90e-10 | 7 |
thymus | 1.39e-08 | 4 |
hemolymphoid system gland | 1.39e-08 | 4 |
thymic region | 1.39e-08 | 4 |
pharyngeal gland | 1.39e-08 | 4 |
thymus primordium | 1.39e-08 | 4 |