FFCP PHASE1:Hg19::chr7:27169967..27169988,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr7:27169967..27169988,-
|short_description=p5@HOXA4
|description=CAGE_peak_5_at_HOXA4_5end
|association_with_transcript=-157bp_to_ENST00000511914_5end
|Entre...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3201 | |EntrezGene=3201 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5105 | |HGNC=5105 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-157bp_to_ENST00000511914_5end | |||
|cluster_id=chr7:27169967..27169988,- | |||
|description=CAGE_peak_5_at_HOXA4_5end | |||
|id=chr7:27169967..27169988,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002581;2.54e-09;1!CL:0002591;2.54e-09;1!CL:0000312;2.67e-07;5!CL:0002595;2.67e-07;5!CL:0002188;2.67e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0002581,1.32e-09,1;CL:0002591,3.25e-09,1;CL:0002188,2.14e-07,5;CL:0000312,2.51e-07,5;CL:0002595,4.03e-07,5 | |||
|ontology_enrichment_development_v019=UBERON:0005754;9.81e-10;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000489!6.47e-07!32;UBERON:0003076!9.21e-07!15;UBERON:0003057!9.21e-07!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0001896;7.08e-25;3!UBERON:0005290;7.08e-25;3!UBERON:0002298;4.76e-22;6!UBERON:0004733;3.96e-11;12!UBERON:0002028;3.96e-11;12!UBERON:0004732;2.77e-10;13!UBERON:0000998;9.81e-10;1!UBERON:0006868;9.81e-10;1!UBERON:0003834;2.67e-07;5!UBERON:0001533;2.67e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001896,5.37e-25,3;UBERON:0005290,5.37e-25,3;UBERON:0010096,5.37e-25,3;UBERON:0002298,3.97e-22,6;UBERON:0003076,1.68e-13,15;UBERON:0003057,1.68e-13,15;UBERON:0004733,3.62e-11,12;UBERON:0002028,3.62e-11,12;UBERON:0007277,3.62e-11,12;UBERON:0004732,2.55e-10,13;UBERON:0000998,1.03e-09,1;UBERON:0006868,1.03e-09,1;UBERON:0000080,9.81e-09,9;UBERON:0002120,9.81e-09,9;UBERON:0004875,9.81e-09,9;UBERON:0005721,9.81e-09,9;UBERON:0005754,9.81e-09,9;UBERON:0007297,9.81e-09,9;UBERON:0004876,3.15e-07,11;UBERON:0003834,4.03e-07,5;UBERON:0001533,4.03e-07,5 | |||
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| ||
|short_description=p5@HOXA4 | |||
}} | }} |
Latest revision as of 01:20, 18 September 2015
Short description: | p5@HOXA4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_HOXA4_5end |
Coexpression cluster: | NA |
Association with transcript: | -157bp_to_ENST00000511914_5end |
EntrezGene: | HOXA4 |
HGNC: | 5105 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
perirenal preadipocyte | 1.32e-09 | 1 |
smooth muscle cell of the pulmonary artery | 3.25e-09 | 1 |
glomerular endothelial cell | 2.14e-07 | 5 |
keratinocyte | 2.51e-07 | 5 |
smooth muscle cell of the subclavian artery | 4.03e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
medulla oblongata | 5.37e-25 | 3 |
myelencephalon | 5.37e-25 | 3 |
future myelencephalon | 5.37e-25 | 3 |
brainstem | 3.97e-22 | 6 |
posterior neural tube | 1.68e-13 | 15 |
chordal neural plate | 1.68e-13 | 15 |
segmental subdivision of hindbrain | 3.62e-11 | 12 |
hindbrain | 3.62e-11 | 12 |
presumptive hindbrain | 3.62e-11 | 12 |
segmental subdivision of nervous system | 2.55e-10 | 13 |
seminal vesicle | 1.03e-09 | 1 |
seminal fluid secreting gland | 1.03e-09 | 1 |
mesonephros | 9.81e-09 | 9 |
pronephros | 9.81e-09 | 9 |
nephrogenic cord | 9.81e-09 | 9 |
pronephric mesoderm | 9.81e-09 | 9 |
rostral part of nephrogenic cord | 9.81e-09 | 9 |
presumptive pronephric mesoderm | 9.81e-09 | 9 |
urogenital ridge | 3.15e-07 | 11 |
thoracic segment blood vessel | 4.03e-07 | 5 |
subclavian artery | 4.03e-07 | 5 |