FFCP PHASE1:Hg19::chr6:75862119..75862155,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DPIdataset= | |DHSsupport=supported | ||
|DPIdataset=robust | |||
|EntrezGene=1303 | |EntrezGene=1303 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC=2188 | |HGNC=2188 | ||
|TSSclassifier= | |TSSclassifier=strong | ||
|UniProt= | |UniProt= | ||
|association_with_transcript=-214bp_to_ENST00000419671_5end | |association_with_transcript=-214bp_to_ENST00000419671_5end | ||
|cluster_id=chr6:75862119..75862155,- | |||
|coexpression_cluster_id=C259 | |coexpression_cluster_id=C259 | ||
|description=CAGE_peak_7_at_COL12A1_5end | |description=CAGE_peak_7_at_COL12A1_5end |
Latest revision as of 20:13, 19 September 2015
Short description: | p7@COL12A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_COL12A1_5end |
Coexpression cluster: | C259_Preadipocyte_Adipocyte_Fibroblast_Chondrocyte_tenocyte_normal_Ewing |
Association with transcript: | -214bp_to_ENST00000419671_5end |
EntrezGene: | COL12A1 |
HGNC: | 2188 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
Sample | p7@COL12A1 |
---|
0.0
2.5
5.0
7.5
10.0
12.5
15.0
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
GAG secreting cell | 2.47e-16 | 9 |
carbohydrate secreting cell | 2.47e-16 | 9 |
fibroblast | 4.25e-14 | 76 |
chondroblast | 4.44e-13 | 6 |
chondrocyte | 4.44e-13 | 6 |
extracellular matrix secreting cell | 5.11e-12 | 15 |
stromal cell | 2.36e-11 | 28 |
skin fibroblast | 2.75e-11 | 23 |
fibrocyte | 9.71e-11 | 3 |
tendon cell | 9.71e-11 | 3 |
Showing 1 to 10 of 18 entries
Ontology term | p-value | n |
---|---|---|
omentum | 2.01e-19 | 6 |
peritoneum | 2.01e-19 | 6 |
abdominal cavity | 2.01e-19 | 6 |
visceral peritoneum | 2.01e-19 | 6 |
cavity lining | 3.89e-16 | 12 |
serous membrane | 3.89e-16 | 12 |
dense regular connective tissue | 9.71e-11 | 3 |
tendon | 9.71e-11 | 3 |
regular connective tissue | 9.71e-11 | 3 |
chest | 1.96e-10 | 11 |
Showing 1 to 10 of 15 entries
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 3.44e-15 | 5 |
myotonic disease | 3.44e-15 | 5 |
muscle tissue disease | 3.44e-15 | 5 |
myopathy | 3.44e-15 | 5 |
muscular disease | 3.44e-15 | 5 |
myotonic dystrophy | 3.44e-15 | 5 |
Showing 1 to 6 of 6 entries