FFCP PHASE1:Hg19::chr7:45026177..45026188,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr7:45026177..45026188,-
|short_description=p2@SNHG15
|description=CAGE_peak_2_at_SNHG15_5end
|association_with_transcript=47bp_to_uc003tmk.3_5end
|EntrezGene...") |
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(11 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=285958 | |EntrezGene=285958 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC=27797 | |HGNC=27797 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=47bp_to_uc003tmk.3_5end | |||
|cluster_id=chr7:45026177..45026188,- | |||
|coexpression_cluster_id=C19 | |||
|description=CAGE_peak_2_at_SNHG15_5end | |||
|id=chr7:45026177..45026188,- | |||
|ontology_enrichment_celltype=CL:0000037!1.27e-17!172;CL:0000566!1.27e-17!172;CL:0000988!4.02e-17!182;CL:0002032!2.49e-16!165;CL:0000837!2.49e-16!165;CL:0000063!2.26e-13!578;CL:0000012!4.18e-13!682;CL:0000548!2.95e-12!679;CL:0000004!2.95e-12!679;CL:0000255!2.95e-12!679;CL:0000738!5.90e-12!140;CL:0000860!2.62e-11!45;CL:0000763!2.91e-11!112;CL:0000049!2.91e-11!112;CL:0000003!7.06e-11!722;CL:0002087!1.03e-10!119;CL:0002057!6.06e-10!42;CL:0002031!1.27e-09!124 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000988,8.26e-21,177;CL:0000037,1.53e-20,168;CL:0002032,8.03e-19,161;CL:0000837,8.03e-19,161;CL:0000738,1.07e-12,136;CL:0000763,5.93e-11,108;CL:0000049,5.93e-11,108;CL:0002087,8.83e-10,115;CL:0002031,1.32e-08,120;CL:0000542,3.42e-08,53;CL:0000051,3.42e-08,53;CL:0000838,6.80e-08,52;CL:0000453,8.29e-07,5 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!8.76e-31!235;DOID:14566!5.97e-30!239;DOID:0050686!5.44e-18!137;DOID:2531!2.84e-15!51;DOID:0060083!2.84e-15!51;DOID:0050687!1.17e-13!143;DOID:305!1.82e-12!106;DOID:1240!1.64e-11!39;DOID:8692!9.52e-08!31;DOID:0060058!6.80e-07!10 | |||
|ontology_enrichment_disease_v019=DOID:2531;2.27e-12;51!DOID:0060083;2.27e-12;51!DOID:1240;2.69e-12;39!DOID:0060058;3.64e-10;10!DOID:8692;1.58e-09;31!DOID:1749;7.24e-09;14 | |||
|ontology_enrichment_disease_v019_2=DOID:14566,1.43e-28,239;DOID:162,1.86e-28,235;DOID:2531,8.53e-21,51;DOID:0060083,8.53e-21,51;DOID:0050686,7.13e-16,137;DOID:1240,9.75e-16,39;DOID:305,1.38e-14,106;DOID:0050687,6.87e-12,143;DOID:0060058,3.27e-10,10;DOID:8692,6.81e-10,31;DOID:1749,1.86e-08,14 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;5.94e-07;9!UBERON:0001557;5.94e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,1.79e-07,9 | |||
|phase1_expression=0,0.642301571672949,0.563817616383885,0,0,0,2.53299878168311,0,0,0.982935746006035,1.39560233594486,0,0,0.123766352960047,0.331397375727916,0,0,0,0,0.246242116153576,0.408001382488506,0,0,0.273748850145768,0.502170558379211,1.22261449196722,1.55991119954897,1.10195093839151,2.36018566109342,1.15148819429164,2.32224184974114,1.83884244895785,0.30120591877825,0,4.5705648342378,6.53978469442139,1.17440175733939,5.53995408531877,4.41197784434312,1.95309783644267,0,0,0.257575567634187,0.436194716338694,1.13362783106643,0.485168122375632,0.464858073811369,1.6446715520873,0.929119112685311,1.7261543539329,2.0492856522328,1.89185783910868,0.689491361473237,1.29096936716765,4.06279459783025,0.941211697713023,0.545812300115692,1.57306439111559,0.612167784741805,0.962787081228281,2.55734850319616,0.329851300186716,0.797854630486527,0.426224750532694,2.61188314765726,5.10646702222026,1.24564449799115,0.502497330513487,1.0429658368404,1.3031330682307,0.605399502633369,2.94622108790052,3.16462387440884,1.47878700418359,2.33864729961548,0.628975936525128,1.01095768031846,0.750884464207532,0.48217676009124,3.13514018115373,0.59675003159727,0.91332076882317,0,0,0,0.426730222566507,0,0,0,0,0,1.76171156811282,1.52909291250092,2.64342657158052,4.48406850385229,0.263384084775077,0.393419540227666,0.393010762749165,1.85041349099558,0.668745981562712,2.60737813306872,0.473447805734733,1.94826728407911,0.445641827540694,1.47302953737419,0.664601683750863,0.541607727530031,0.384273959177026,1.56071217071854,0.328875809207352,0,0.579606171470105,1.03800594213442,0.802622484269139,0,0.226618685395132,0.766440987203842,1.37450978193052,0.253019692019503,0,0,0.950452044448374,0.150575119077773,0.127986611154418,1.24930726552346,0,0,2.21767417547206,0.802320587350522,0.434473211648397,2.43806866313962,0,0,0.361439152384566,1.00267582127178,0.579386075843295,0.795285947051099,0,0.0945348171640679,0.665188192387692,0.351339142772504,0.327447688744282,0.364295288292542,0.741568885568859,0,0.522389211897802,0.132957960518865,0.238490624305342,0,2.22874500797739,0,0,0.694281003215189,0.56530794192401,0,1.37559020970034,0.417989933073621,0.258416759169329,0,0,0,3.04108842287405,0.24406205754817,0.367663080345869,0,0.267899184852239,0,0.225222960966644,3.06633274931766,0,0.183201743930407,0,0,0.872188104285069,0.496971951695318,0.759783069987479,1.05927344650575,0.573673241497627,1.06400514659507,0,0,0.74000264525148,0.311211035399766,0.134710672069688,0.653847612453835,0.302714855289863,0,0.937285727335186,0,0.570471821544449,0.448346041655403,0.587172493218824,0.809364721840658,0.561803226808994,0,0.122834317311768,0.206651562351531,0,0,0,0.718618141816238,0,0.125118519871964,0.554128230968366,0,0.919463387397059,0,0.453728732640084,0.358779271377724,0.213557388818567,0.635795703478686,0.600182192168805,0.206105058476878,0.515281080091258,0,0.843881661206331,0.194874010322397,0.252433774244115,0,0,0,0.201504196455281,0,0.386521706326594,1.09098448236334,0.860413786167011,0.243947412259191,0.265059536642971,0.116193942869518,0,0.252320850875628,0,0,0,0,0.928735856063958,0.721879481669586,2.36613600079688,2.02301628093722,1.44606617930089,2.75734931830985,1.96091499683166,1.66089433377768,2.29213223872279,1.56977172100277,1.92373578473195,0,0,1.2347220339942,0,0,0,0,1.7658523976586,0.368965315629341,0.171567810298526,0.439001141634502,3.37205259772859,0.301586917234893,0.185176890317059,2.28065813717227,0,2.88662684050547,0,0,0.433099343283221,0.462985512576611,0,0,0,0,0,0.297262324577456,0.93733833986777,0,0.425325291727159,2.05984602216551,1.45316969256981,0.383382679165211,0.985326475791887,0.088048434013226,0,0.144119953416961,0.37872730027914,0.063497894292169,0,0,0,0.205654985406647,0.600686115687835,0,0.336393253036082,0.43596006883328,0.4400297149257,0.129271715757778,0,0,0,0,0.257207374262142,0,0.799266537048298,0.285955987316295,0.542621605391443,0,0.65147236858747,0,0.791951872933429,0,0,0,0,0,0,0,0,0,0.579125226670317,0.61642896765115,0,4.48340575974109,2.1673383622212,0.646882724578552,0.77005821767849,0,0,1.54657762555539,0.335032530668698,0.637938751653163,0,2.99161459204025,0,0,0,0.271265023699736,0,0,0.157702415033935,0.117141414992713,0,0,1.03473071292505,0,0.184369168541703,0,0,0.343143423810856,0.82707210449155,1.94142780736755,1.60091336705167,4.85004114314015,1.66435439510497,0.604780586659361,0.992431231275107,0,0.280660094433074,0.256278298511402,0,0.160853921143607,0,0.771048469013278,0.532685175939381,0.410635780069046,0,0.929683027679674,1.20859449591622,0,0.644566922551274,0.68888668898764,0,0.131124414959424,0.451199612907412,0.0770153371044148,0,0,0,0,0.340187410553031,0.647747748306418,0,0.541892875087706,0,0,0,0,0,0.522870902049801,0,0.328014645699706,0.650756789328606,0.103041011647722,0.457847324091717,1.15513299888823,1.14853107599234,0.650060246036521,0,0.773365746336976,0.462145851343933,0.460511024178389,0.551346289938122,0.214840489736547,0.290033387828457,0.681813019328807,0.4451601782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| ||
|short_description=p2@SNHG15 | |||
}} | }} |
Latest revision as of 18:31, 18 September 2015
Short description: | p2@SNHG15 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SNHG15_5end |
Coexpression cluster: | C19_embryonic_testis_cord_chronic_CD14_NK_mesothelioma |
Association with transcript: | 47bp_to_uc003tmk.3_5end |
EntrezGene: | SNHG15 |
HGNC: | 27797 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic cell | 8.26e-21 | 177 |
hematopoietic stem cell | 1.53e-20 | 168 |
hematopoietic oligopotent progenitor cell | 8.03e-19 | 161 |
hematopoietic multipotent progenitor cell | 8.03e-19 | 161 |
leukocyte | 1.07e-12 | 136 |
myeloid cell | 5.93e-11 | 108 |
common myeloid progenitor | 5.93e-11 | 108 |
nongranular leukocyte | 8.83e-10 | 115 |
hematopoietic lineage restricted progenitor cell | 1.32e-08 | 120 |
lymphocyte | 3.42e-08 | 53 |
common lymphoid progenitor | 3.42e-08 | 53 |
lymphoid lineage restricted progenitor cell | 6.80e-08 | 52 |
Langerhans cell | 8.29e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
larynx | 1.79e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
disease of cellular proliferation | 1.43e-28 | 239 |
cancer | 1.86e-28 | 235 |
hematologic cancer | 8.53e-21 | 51 |
immune system cancer | 8.53e-21 | 51 |
organ system cancer | 7.13e-16 | 137 |
leukemia | 9.75e-16 | 39 |
carcinoma | 1.38e-14 | 106 |
cell type cancer | 6.87e-12 | 143 |
lymphoma | 3.27e-10 | 10 |
myeloid leukemia | 6.81e-10 | 31 |
squamous cell carcinoma | 1.86e-08 | 14 |