FFCP PHASE1:Hg19::chr10:129979299..129979317,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(One intermediate revision by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC= | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-82bp_to_uc001lkg.1_5end | |||
|cluster_id=chr10:129979299..129979317,+ | |||
|coexpression_cluster_id=C974 | |||
|description=CAGE_peak_1_at_uc001lkg.1_5end | |||
|id=chr10:129979299..129979317,+ | |||
|ontology_enrichment_celltype=CL:0000084!1.54e-25!25;CL:0000827!1.54e-25!25;CL:0000791!1.27e-24!18;CL:0000789!1.27e-24!18;CL:0002420!1.27e-24!18;CL:0002419!1.27e-24!18;CL:0000790!1.27e-24!18;CL:0000625!5.95e-22!11;CL:0000838!1.67e-19!52;CL:0000542!5.16e-19!53;CL:0000051!5.16e-19!53;CL:0000738!3.62e-16!140;CL:0000037!5.45e-13!172;CL:0000566!5.45e-13!172;CL:0002087!2.54e-12!119;CL:0000988!1.02e-11!182;CL:0000784!3.01e-09!3;CL:0002031!6.17e-09!124;CL:0002032!8.27e-09!165;CL:0000837!8.27e-09!165;CL:0000623!2.82e-08!3;CL:0000825!2.82e-08!3;CL:0000767!1.50e-07!3;CL:0000842!2.28e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0000784;2.02e-21;3!CL:0000625;9.40e-21;11!CL:0000084;8.85e-20;25!CL:0000791;6.09e-17;18!CL:0000789;6.09e-17;18!CL:0002419;6.09e-17;18!CL:0002127;4.55e-08;1!CL:0000911;4.55e-08;1!CL:0000814;4.55e-08;1!CL:0000542;9.46e-07;53 | |||
|ontology_enrichment_celltype_v019_2=CL:0000784,1.95e-21,3;CL:0000625,8.02e-21,11;CL:0000084,7.80e-20,25;CL:0000827,7.80e-20,25;CL:0000791,5.94e-17,18;CL:0000789,5.94e-17,18;CL:0002420,5.94e-17,18;CL:0002419,5.94e-17,18;CL:0000790,5.94e-17,18;CL:0000838,6.80e-11,52;CL:0000542,1.17e-10,53;CL:0000051,1.17e-10,53;CL:0002127,5.79e-08,1;CL:0000914,5.79e-08,1;CL:0000911,5.79e-08,1;CL:0000814,5.79e-08,1;CL:0002042,5.79e-08,1;CL:0002039,5.79e-08,1;CL:0002040,5.79e-08,1;CL:0002041,5.79e-08,1;CL:0000738,8.86e-07,136 | |||
|ontology_enrichment_development_v019=CL:0000790;6.09e-17;18!CL:0000051;9.46e-07;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!3.82e-09!15;UBERON:0000179!3.82e-09!15;UBERON:0000463!3.82e-09!15;UBERON:0002370!9.36e-07!4;UBERON:0005058!9.36e-07!4;UBERON:0009113!9.36e-07!4;UBERON:0003295!9.36e-07!4;UBERON:0005562!9.36e-07!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0002370;3.65e-14;2!UBERON:0005058;3.65e-14;2!UBERON:0009113;3.65e-14;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,1.38e-15,4;UBERON:0005058,1.38e-15,4;UBERON:0009113,1.38e-15,4;UBERON:0003295,1.38e-15,4;UBERON:0005562,1.38e-15,4;UBERON:0003351,1.43e-10,6;UBERON:0004177,3.95e-09,7;UBERON:0005057,3.95e-09,7 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393364276848904,0.383829398097213,0.309632246632152,0,0,0,0,0,0,0.553995408531877,0,0.217010870715852,0,0,0,0,0,0.242584061187816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329851300186716,0,0,0,0,0,0,0,0,0,0,0,0,0.212604299965044,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.382273228125229,0,0.560508562981536,0.526768169550154,0.393419540227666,0,0.205601498999509,6.01871383406441,0,0.473447805734733,0,2.22820913770347,0.589211814949674,1.10766947291811,4.60366568400527,3.20228299314188,4.03183977435623,4.60426132890293,4.42160028457357,3.76744011455568,0.444859689486181,0.802622484269139,1.04535523804977,3.73920830901968,0,2.74901956386104,2.53019692019503,0.95569624297229,1.95325036156926,1.90090408889675,0.451725357233318,1.53583933385302,1.24930726552346,2.36777252044017,0,1.41124720257313,0.534880391567015,0.579297615531196,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,2.38490624305342,4.0039643754609,4.82894751728434,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.20731549707325,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.01753259188349,1.37921532141349,0.431255149719035,0.77005821767849,0,0,0,0,0,0.749007023947182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.413536052245775,0.215714200818617,0.213455115606889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.764637207142375,0,1.19115887728894,0.822724546172388,0.648473311192717,0.540031437238115,0,0,0,0,0,0.28853842595289,1.9919716137556,0.637705090915289,0,0.383010740264733,0,0,0,0.228234679033192,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.34330152832435,0,0,0,0,0,0,0,0,0,0,0.276283915531148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.423366660328922,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.714695326373367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157204305099666,0.414239055347196,0.496166021811951,0.197611631897944,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4226557275834,0,0,0.257831551894309,0,0,0,0,0,0,0,0,0.0679914901909147,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213233981900981,0.23806443146374,1.93766729508018,2.97958628620118,0,0,0.202117188958219,0,0,0.134704106029175,0.143444410785353,0,0,0,0,0,0,0.122241444182866,0,0,0.402547587182052,0 | |||
|short_description=p1@uc001lkg.1 | |||
}} |
Latest revision as of 11:39, 23 July 2015
Short description: | p1@uc001lkg.1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_uc001lkg.1_5end |
Coexpression cluster: | C974_Dendritic_CD8_CD4_Natural_NK_B_Basophils |
Association with transcript: | -82bp_to_uc001lkg.1_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
plasmacytoid dendritic cell | 1.95e-21 | 3 |
CD8-positive, alpha-beta T cell | 8.02e-21 | 11 |
T cell | 7.80e-20 | 25 |
pro-T cell | 7.80e-20 | 25 |
mature alpha-beta T cell | 5.94e-17 | 18 |
alpha-beta T cell | 5.94e-17 | 18 |
immature T cell | 5.94e-17 | 18 |
mature T cell | 5.94e-17 | 18 |
immature alpha-beta T cell | 5.94e-17 | 18 |
lymphoid lineage restricted progenitor cell | 6.80e-11 | 52 |
lymphocyte | 1.17e-10 | 53 |
common lymphoid progenitor | 1.17e-10 | 53 |
innate effector T cell | 5.79e-08 | 1 |
immature NK T cell | 5.79e-08 | 1 |
effector T cell | 5.79e-08 | 1 |
mature NK T cell | 5.79e-08 | 1 |
immature NK T cell stage IV | 5.79e-08 | 1 |
immature NK T cell stage I | 5.79e-08 | 1 |
immature NK T cell stage II | 5.79e-08 | 1 |
immature NK T cell stage III | 5.79e-08 | 1 |
leukocyte | 8.86e-07 | 136 |
Ontology term | p-value | n |
---|---|---|
thymus | 1.38e-15 | 4 |
hemolymphoid system gland | 1.38e-15 | 4 |
thymic region | 1.38e-15 | 4 |
pharyngeal gland | 1.38e-15 | 4 |
thymus primordium | 1.38e-15 | 4 |
pharyngeal epithelium | 1.43e-10 | 6 |
hemopoietic organ | 3.95e-09 | 7 |
immune organ | 3.95e-09 | 7 |