FFCP PHASE1:Hg19::chr11:118889456..118889507,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=51399 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=19943 | |||
|TSSclassifier=strong | |||
|UniProt=Q9Y296,B4DME1,G3V1A0,E9PKS9,E9PQE8,G5EA23,E9PN70 | |||
|association_with_transcript=0bp_to_ENST00000359005,ENST00000434101,ENST00000447216,ENST00000525079,ENST00000525303,ENST00000527680,ENST00000528230,ENST00000531290,ENST00000533012,ENST00000533058_5end | |||
|cluster_id=chr11:118889456..118889507,+ | |||
|description=CAGE_peak_1_at_TRAPPC4_5end | |||
|id=chr11:118889456..118889507,+ | |||
|ontology_enrichment_celltype=CL:0000003!2.11e-17!722;CL:0000012!1.81e-16!682;CL:0000548!4.06e-16!679;CL:0000004!4.06e-16!679;CL:0000255!4.06e-16!679;CL:0000144!2.34e-13!625;CL:0002371!4.74e-13!591;CL:0000359!5.88e-13!32;CL:0000680!1.50e-12!57;CL:0000056!1.50e-12!57;CL:0000355!1.50e-12!57;CL:0000393!1.66e-12!60;CL:0000211!1.66e-12!60;CL:0000055!1.98e-12!180;CL:0000187!1.55e-11!54;CL:0000034!4.03e-11!444;CL:0000723!2.27e-10!436;CL:0000048!5.15e-10!430;CL:0000192!7.93e-10!42;CL:0000514!7.93e-10!42;CL:0002321!3.30e-09!248;CL:0000220!4.47e-09!246;CL:0000183!1.39e-08!59;CL:0000222!1.75e-08!119 | |||
|ontology_enrichment_celltype_v019=CL:0000359;4.49e-12;32!CL:0000393;2.37e-07;61!CL:0000211;2.37e-07;61!CL:0000192;3.61e-07;43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000359,5.88e-13,32;CL:0000680,1.72e-12,58;CL:0000056,1.72e-12,58;CL:0000355,1.72e-12,58;CL:0000393,1.87e-12,61;CL:0000211,1.87e-12,61;CL:0000034,8.46e-12,441;CL:0000187,1.76e-11,55;CL:0000723,5.03e-11,433;CL:0000048,1.17e-10,427;CL:0000192,9.18e-10,43;CL:0000514,9.18e-10,43;CL:0002321,3.51e-09,250;CL:0000222,2.12e-08,121 | |||
|ontology_enrichment_development_v019=CL:0000514;3.61e-07;43!CL:0000355;9.70e-07;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!8.26e-12!83;UBERON:0002329!8.26e-12!83;UBERON:0003077!8.26e-12!83;UBERON:0003059!8.26e-12!83;UBERON:0007282!8.26e-12!83;UBERON:0009618!8.26e-12!83;UBERON:0007285!8.26e-12!83;UBERON:0004290!7.63e-11!70;UBERON:0001134!1.22e-10!61;UBERON:0002036!1.22e-10!61;UBERON:0003082!1.22e-10!61;UBERON:0001637!2.29e-10!42;UBERON:0003509!2.29e-10!42;UBERON:0004572!2.29e-10!42;UBERON:0002385!4.61e-10!63;UBERON:0001015!4.61e-10!63;UBERON:0000383!4.61e-10!63;UBERON:0000486!2.84e-09!82;UBERON:0000490!4.22e-09!138;UBERON:0004573!2.46e-08!33;UBERON:0004571!2.46e-08!33;UBERON:0000055!3.51e-07!69;UBERON:0002049!4.84e-07!79;UBERON:0007798!4.84e-07!79;UBERON:0001981!5.06e-07!60;UBERON:0007500!5.06e-07!60;UBERON:0004537!5.06e-07!60;UBERON:0006965!5.06e-07!60;UBERON:0004872!6.37e-07!84 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;1.82e-07;33!UBERON:0004571;1.82e-07;33!UBERON:0001637;2.89e-07;42!UBERON:0003509;2.89e-07;42!UBERON:0004572;2.89e-07;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002329,8.00e-11,71;UBERON:0003059,8.00e-11,71;UBERON:0007282,8.00e-11,71;UBERON:0004290,8.00e-11,71;UBERON:0009618,8.00e-11,71;UBERON:0001134,1.31e-10,62;UBERON:0002036,1.31e-10,62;UBERON:0003082,1.31e-10,62;UBERON:0007524,1.67e-10,73;UBERON:0003077,2.07e-10,72;UBERON:0007285,2.07e-10,72;UBERON:0001637,2.29e-10,42;UBERON:0003509,2.29e-10,42;UBERON:0004572,2.29e-10,42;UBERON:0002385,4.86e-10,64;UBERON:0001015,4.86e-10,64;UBERON:0000383,4.86e-10,64;UBERON:0000490,1.29e-09,148;UBERON:0000486,2.84e-09,83;UBERON:0004573,2.46e-08,33;UBERON:0004571,2.46e-08,33;UBERON:0007503,4.98e-08,78;UBERON:0000055,3.06e-07,68;UBERON:0007500,4.33e-07,59;UBERON:0001981,4.33e-07,59;UBERON:0004537,4.33e-07,59;UBERON:0006965,4.33e-07,59;UBERON:0002049,4.33e-07,78;UBERON:0007798,4.33e-07,78;UBERON:0004872,5.76e-07,83 | |||
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| |||
|short_description=p1@TRAPPC4 | |||
}} |
Latest revision as of 02:17, 16 September 2015
Short description: | p1@TRAPPC4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_TRAPPC4_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000359005, ENST00000434101, ENST00000447216, ENST00000525079, ENST00000525303, ENST00000527680, ENST00000528230, ENST00000531290, ENST00000533012, ENST00000533058_5end |
EntrezGene: | TRAPPC4 |
HGNC: | 19943 |
UniProt: | Q9Y296B4DME1G3V1A0E9PKS9E9PQE8G5EA23E9PN70 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
vascular associated smooth muscle cell | 5.88e-13 | 32 |
muscle precursor cell | 1.72e-12 | 58 |
myoblast | 1.72e-12 | 58 |
multi-potent skeletal muscle stem cell | 1.72e-12 | 58 |
electrically responsive cell | 1.87e-12 | 61 |
electrically active cell | 1.87e-12 | 61 |
stem cell | 8.46e-12 | 441 |
muscle cell | 1.76e-11 | 55 |
somatic stem cell | 5.03e-11 | 433 |
multi fate stem cell | 1.17e-10 | 427 |
smooth muscle cell | 9.18e-10 | 43 |
smooth muscle myoblast | 9.18e-10 | 43 |
embryonic cell | 3.51e-09 | 250 |
mesodermal cell | 2.12e-08 | 121 |
Ontology term | p-value | n |
---|---|---|
somite | 8.00e-11 | 71 |
presomitic mesoderm | 8.00e-11 | 71 |
presumptive segmental plate | 8.00e-11 | 71 |
dermomyotome | 8.00e-11 | 71 |
trunk paraxial mesoderm | 8.00e-11 | 71 |
skeletal muscle tissue | 1.31e-10 | 62 |
striated muscle tissue | 1.31e-10 | 62 |
myotome | 1.31e-10 | 62 |
dense mesenchyme tissue | 1.67e-10 | 73 |
paraxial mesoderm | 2.07e-10 | 72 |
presumptive paraxial mesoderm | 2.07e-10 | 72 |
artery | 2.29e-10 | 42 |
arterial blood vessel | 2.29e-10 | 42 |
arterial system | 2.29e-10 | 42 |
muscle tissue | 4.86e-10 | 64 |
musculature | 4.86e-10 | 64 |
musculature of body | 4.86e-10 | 64 |
unilaminar epithelium | 1.29e-09 | 148 |
multilaminar epithelium | 2.84e-09 | 83 |
systemic artery | 2.46e-08 | 33 |
systemic arterial system | 2.46e-08 | 33 |
epithelial vesicle | 4.98e-08 | 78 |
vessel | 3.06e-07 | 68 |
epithelial tube open at both ends | 4.33e-07 | 59 |
blood vessel | 4.33e-07 | 59 |
blood vasculature | 4.33e-07 | 59 |
vascular cord | 4.33e-07 | 59 |
vasculature | 4.33e-07 | 78 |
vascular system | 4.33e-07 | 78 |
splanchnic layer of lateral plate mesoderm | 5.76e-07 | 83 |