FFCP PHASE1:Hg19::chr8:121824235..121824275,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr8:121824235..121824275,-
|short_description=p1@SNTB1
|description=CAGE_peak_1_at_SNTB1_5end
|association_with_transcript=33bp_to_NM_021021,uc003ype.2,uc010md...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6641 | |EntrezGene=6641 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11168 | |HGNC=11168 | ||
|TSSclassifier=strong | |||
|UniProt=Q13884 | |UniProt=Q13884 | ||
|association_with_transcript=33bp_to_NM_021021,uc003ype.2,uc010mdg.2_5end | |||
|cluster_id=chr8:121824235..121824275,- | |||
|coexpression_cluster_id=C4724 | |||
|description=CAGE_peak_1_at_SNTB1_5end | |||
|id=chr8:121824235..121824275,- | |||
|ontology_enrichment_celltype=CL:0002320!3.44e-29!365;CL:0000134!1.35e-26!358;CL:0000048!9.24e-22!430;CL:0000219!3.29e-20!390;CL:0002057!4.78e-20!42;CL:0002194!5.99e-20!63;CL:0000576!5.99e-20!63;CL:0000040!5.99e-20!63;CL:0000559!5.99e-20!63;CL:0000034!1.09e-19!444;CL:0000723!1.66e-19!436;CL:0000766!3.13e-18!76;CL:0002009!4.34e-18!65;CL:0000763!5.16e-17!112;CL:0000049!5.16e-17!112;CL:0000860!8.94e-17!45;CL:0000839!3.14e-16!70;CL:0000557!9.46e-15!71;CL:0000037!9.85e-15!172;CL:0000566!9.85e-15!172;CL:0002087!1.59e-14!119;CL:0000988!4.39e-14!182;CL:0002032!6.35e-14!165;CL:0000837!6.35e-14!165;CL:0000738!1.41e-11!140;CL:0002031!1.73e-10!124 | |||
|ontology_enrichment_celltype_v019=CL:0000473;1.01e-16;39!CL:0000234;1.01e-16;39!CL:0000860;7.14e-16;33!CL:0002057;7.14e-16;33!CL:0000576;1.70e-15;48!CL:0000766;4.32e-11;69!CL:0000763;3.02e-09;100 | |||
|ontology_enrichment_celltype_v019_2=CL:0002320,1.22e-31,361;CL:0000134,7.33e-29,354;CL:0000473,5.99e-25,48;CL:0000234,5.99e-25,48;CL:0002194,1.41e-23,59;CL:0000576,1.41e-23,59;CL:0000040,1.41e-23,59;CL:0000559,1.41e-23,59;CL:0000048,6.04e-23,427;CL:0000219,7.24e-22,386;CL:0000766,7.30e-22,72;CL:0002009,9.97e-22,61;CL:0000723,4.16e-21,433;CL:0000860,4.32e-21,42;CL:0002057,4.32e-21,42;CL:0000763,4.75e-21,108;CL:0000049,4.75e-21,108;CL:0000034,8.68e-21,441;CL:0000839,1.10e-19,66;CL:0000557,3.04e-18,67;CL:0000037,1.87e-16,168;CL:0000988,6.13e-16,177;CL:0002032,1.73e-15,161;CL:0000837,1.73e-15,161;CL:0002087,5.92e-15,115;CL:0000738,1.33e-12,136;CL:0002031,3.32e-11,120 | |||
|ontology_enrichment_development_v019=CL:0002057;2.54e-15;42!CL:0000049;1.70e-07;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002384!1.53e-29!375;UBERON:0002390!1.87e-18!102;UBERON:0003061!1.87e-18!102;UBERON:0004765!6.77e-17!101;UBERON:0001434!6.77e-17!101;UBERON:0002371!1.08e-15!80;UBERON:0002405!1.43e-15!115;UBERON:0001474!1.69e-15!86;UBERON:0002193!2.59e-15!112;UBERON:0002204!9.54e-14!167;UBERON:0000479!1.85e-07!787 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002384,6.83e-32,371;UBERON:0001434,3.63e-22,100;UBERON:0002390,3.51e-21,98;UBERON:0003061,3.51e-21,98;UBERON:0004765,1.08e-19,90;UBERON:0002371,2.73e-19,76;UBERON:0001474,3.11e-19,82;UBERON:0002193,3.81e-18,108;UBERON:0002204,2.01e-16,167;UBERON:0002405,8.57e-16,93;UBERON:0000479,6.92e-10,773 | |||
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| ||
|short_description=p1@SNTB1 | |||
}} | }} |
Latest revision as of 22:45, 15 September 2015
Short description: | p1@SNTB1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SNTB1_5end |
Coexpression cluster: | C4724_osteosarcoma_Hepatocyte_hepatoblastoma_liver_acute_hepatocellular_CD14 |
Association with transcript: | 33bp_to_NM_021021, uc003ype.2, uc010mdg.2_5end |
EntrezGene: | SNTB1 |
HGNC: | 11168 |
UniProt: | Q13884 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
connective tissue cell | 1.22e-31 | 361 |
mesenchymal cell | 7.33e-29 | 354 |
defensive cell | 5.99e-25 | 48 |
phagocyte | 5.99e-25 | 48 |
monopoietic cell | 1.41e-23 | 59 |
monocyte | 1.41e-23 | 59 |
monoblast | 1.41e-23 | 59 |
promonocyte | 1.41e-23 | 59 |
multi fate stem cell | 6.04e-23 | 427 |
motile cell | 7.24e-22 | 386 |
myeloid leukocyte | 7.30e-22 | 72 |
macrophage dendritic cell progenitor | 9.97e-22 | 61 |
somatic stem cell | 4.16e-21 | 433 |
classical monocyte | 4.32e-21 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.32e-21 | 42 |
myeloid cell | 4.75e-21 | 108 |
common myeloid progenitor | 4.75e-21 | 108 |
stem cell | 8.68e-21 | 441 |
myeloid lineage restricted progenitor cell | 1.10e-19 | 66 |
granulocyte monocyte progenitor cell | 3.04e-18 | 67 |
hematopoietic stem cell | 1.87e-16 | 168 |
hematopoietic cell | 6.13e-16 | 177 |
hematopoietic oligopotent progenitor cell | 1.73e-15 | 161 |
hematopoietic multipotent progenitor cell | 1.73e-15 | 161 |
nongranular leukocyte | 5.92e-15 | 115 |
leukocyte | 1.33e-12 | 136 |
hematopoietic lineage restricted progenitor cell | 3.32e-11 | 120 |
Ontology term | p-value | n |
---|---|---|
connective tissue | 6.83e-32 | 371 |
skeletal system | 3.63e-22 | 100 |
hematopoietic system | 3.51e-21 | 98 |
blood island | 3.51e-21 | 98 |
skeletal element | 1.08e-19 | 90 |
bone marrow | 2.73e-19 | 76 |
bone element | 3.11e-19 | 82 |
hemolymphoid system | 3.81e-18 | 108 |
musculoskeletal system | 2.01e-16 | 167 |
immune system | 8.57e-16 | 93 |
tissue | 6.92e-10 | 773 |