FFCP PHASE1:Hg19::chr12:15104068..15104114,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=397 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=679 | |||
|TSSclassifier=strong | |||
|UniProt=F5H3P3 | |||
|association_with_transcript=0bp_to_ENST00000545895_5end | |||
|cluster_id=chr12:15104068..15104114,- | |||
|coexpression_cluster_id=C50 | |||
|description=CAGE_peak_3_at_ARHGDIB_5end | |||
|id=chr12:15104068..15104114,- | |||
|ontology_enrichment_celltype=CL:0000066!1.85e-35!254;CL:0000076!3.58e-14!62;CL:0002076!2.40e-07!43;CL:0000220!2.54e-07!246;CL:0002321!3.46e-07!248 | |||
|ontology_enrichment_celltype_v019=CL:1000449;4.16e-08;15!CL:0000349;4.41e-08;19!CL:0002251;6.51e-08;20!CL:0002076;1.48e-07;42!CL:1000507;2.44e-07;10!CL:1000494;2.44e-07;10!CL:0000076;4.47e-07;63!CL:1000497;7.90e-07;17!CL:0002518;7.90e-07;17 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,5.16e-37,253;CL:0000076,8.89e-12,63;CL:0002076,7.70e-09,42;CL:0000349,4.48e-08,19;CL:1000449,4.56e-08,15;CL:0002251,7.05e-08,20;CL:1000507,2.33e-07,10;CL:1000494,2.33e-07,10;CL:1000497,8.53e-07,17;CL:0002518,8.53e-07,17 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:305!1.58e-13!106;DOID:1749!6.62e-10!14;DOID:0050687!1.60e-08!143 | |||
|ontology_enrichment_disease_v019=DOID:1749;3.70e-16;14!DOID:299;1.77e-07;25 | |||
|ontology_enrichment_disease_v019_2=DOID:305,5.15e-19,106;DOID:1749,5.38e-16,14;DOID:0050687,1.82e-13,143;DOID:162,5.26e-08,235;DOID:14566,6.70e-08,239;DOID:299,1.96e-07,25 | |||
|ontology_enrichment_uberon=UBERON:0003914!2.56e-10!118;UBERON:0005631!1.91e-09!14;UBERON:0000158!1.91e-09!14;UBERON:0001048!4.26e-08!168;UBERON:0000478!2.08e-07!24;UBERON:0003124!4.56e-07!7;UBERON:0000477!4.83e-07!286;UBERON:0004535!5.52e-07!110;UBERON:0004872!6.32e-07!84;UBERON:0001009!6.42e-07!113;UBERON:0000064!9.92e-07!219 | |||
|ontology_enrichment_uberon_v019=UBERON:0005631;1.25e-09;10!UBERON:0000158;1.25e-09;10!UBERON:0001737;7.33e-09;9!UBERON:0001557;7.33e-09;9!UBERON:0006555;4.16e-08;15!UBERON:0004819;4.16e-08;15!UBERON:0001285;4.16e-08;15!UBERON:0007684;4.16e-08;15!UBERON:0004211;2.44e-07;10!UBERON:0009773;2.44e-07;10!UBERON:0001231;2.44e-07;10!UBERON:0004810;2.44e-07;10!UBERON:0000344;4.73e-07;20!UBERON:0000478;5.58e-07;24!UBERON:0001987;6.12e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,9.71e-15,14;UBERON:0000158,9.71e-15,14;UBERON:0003124,4.25e-11,7;UBERON:0001737,4.71e-09,9;UBERON:0001048,3.91e-08,160;UBERON:0004211,4.56e-08,15;UBERON:0009773,4.56e-08,15;UBERON:0001231,4.56e-08,15;UBERON:0001285,4.56e-08,15;UBERON:0007684,4.56e-08,15;UBERON:0004208,4.56e-08,15;UBERON:0006555,2.17e-07,16;UBERON:0004819,2.17e-07,16;UBERON:0004810,2.33e-07,10;UBERON:0000478,5.65e-07,24;UBERON:0000344,5.81e-07,20;UBERON:0001987,6.24e-07,4;UBERON:0004340,6.24e-07,4;UBERON:0004871,9.60e-07,8 | |||
|phase1_expression=0,0.214100523890983,0.140954404095971,0,0,0.872338524100369,0,0,0,18.9215131106162,11.1648186875588,41.7223020768629,36.663609973755,0,0,0.672325146451775,0,0.730310090387373,1.95173119516203,0.123121058076788,0,0,0.286235987131057,0,0.376627918784408,1.68109492645493,2.21671591514854,2.59745578335141,0.393364276848904,0,1.70297735647684,2.75826367343678,0.90361775633475,0.369754010166788,0,0.284338464974843,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.344745680736619,0,0,0,0.272906150057846,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0,0.196709770113833,0,0.822405995998037,0.167186495390678,0.32592226663359,0.473447805734733,0,0,1.47302953737419,0.443067789167242,0.270803863765016,0.25618263945135,0.260118695119756,0,0,0,0.296573126324121,0,1.04535523804977,0.113309342697566,0,0.68725489096526,0.253019692019503,0,0,0,0.150575119077773,0.255973222308837,0,0.236777252044017,0,0.201606743224732,0.534880391567015,0.144824403882799,0,4.02420515822182,4.98663991189768,0,0.50133791063589,0,0,0,1.03988298880475,1.55210578223795,2.63504357079378,0.196468613246569,2.91436230634034,3.70784442784429,0,0,0,0,0,0,0,1.72046919021225,0.347140501607594,0.56530794192401,0.838998872419812,0.275118041940067,0.417989933073621,0.775250277507987,0.35576626268671,1.00416183829401,1.20848795132744,0.760272105718513,0.488124115096339,0.735326160691737,0,1.07159673940896,0.673588117878509,0.337834441449967,0,0.949265659568129,0,0,0,1.3082821564276,0,0.633152558322899,0.132409180813219,0,0.354668382198357,0.560677600142307,5.33744978648525,0.24666754841716,1.55605517699883,0.538842688278752,1.30769522490767,0,0,0,0,0,0.149448680551801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.51639767796065,0,0,0,0,0,0,0.18611685633159,0,0,0,0,0,0,0.201504196455281,0.339121184620975,5.02478218224572,3.54569956768085,2.00763216772303,0.121973706129595,0,0.929551542956147,2.17688215532278,1.7662459561294,0,0,0,0,0,0,1.65629520055781,2.69735504124963,1.68707720918437,2.42646740011267,2.61455332910887,3.32178866755535,1.8876383142423,2.35465758150415,1.15424147083917,0,0,3.2925920906512,5.88034845542168,0,0,0,0,24.7206761471658,1.3725424823882,0.658501712451753,0,1.10581869652794,1.66659201285353,0,0,8.6598805215164,0.695582429850461,4.81375646366869,0.866198686566443,0.925971025153221,0.761016608938393,3.1608175918371,2.57545848628462,0,0,0,10.3107217385455,1.51183915378974,2.97727704209012,0.716468181622786,2.3250715081117,1.91691339582606,0,0,0,0,0.12624243342638,0,0,0,1.71072446022705,0,0,0,0.224262168690721,0,0.1466765716419,0.904902010304444,0,0,0.26593811658487,0,0.257207374262142,0,0,0.142977993658148,0.542621605391443,0,0,0.710783897485092,0.791951872933429,0.904318131178758,2.61460037580088,0.399891964728228,0,0,0,0.718874566474748,0,1.42636905040718,0.723906533337896,0,0,0.112085143993527,0,0,0.385029108839245,0,0,0,0,0,0,0,0,0,0,0,0.415941723061614,0,0,0,0,0,0,0.664225598535437,0,0,0.195801157462741,0,0,0.431428401637234,0.106727557803444,17.2782715724368,58.252403828674,45.0561537061224,0,0,0,0.384417447767103,0,0.482561763430822,0,0,0,0,0,0,19.9418091826177,2.6065841139427,0.0920809889358963,0,0,0,4.51199612907412,4.08181286653398,3.92174884588428,2.92278449306521,1.37217117560738,1.13733384070897,0.170093705276516,1.51141141271498,0,0.541892875087706,0.501689773854853,4.58777291481069,8.31076008928724,3.1342465661105,0,0,0.256450125116389,2.29610251989794,0.325378394664303,9.17065003664728,0,0,0.574265537996172,1.30012049207304,3.21367859688319,0,0,0,0,0,0,0,0,0.826424576804891,0.384380134730212,0.510450849978337,0,0,0,0,0.308033580176089,2.66153015158511,0.869932992075073,0,1.28812398067792,0,0.316379424718726,0.953150969619124,0,0,0,0.78494864019923,0,0,0,2.62837226045311,4.75530963519025,0.421258456238981,0,0,2.11300293513511,0,0.141405431953713,0,0,3.3171948762061,1.31535265576129,0,0,1.21746226177622,1.8589409885985,1.12678241012897,0.717056761020258,0.687743287091848,1.07001315444375,0,0,0,0,0,0.673554789078584,0,2.17781969722645,10.9206808901064,1.72202149068492,0,0.886860307073351,0,1.01489521846434,1.52927441428475,1.13929437434833,0.476463550915578,1.23408681925858,1.29694662238543,1.08006287447623,0,0,0,20.5833781424067,0,0,0.0711418433484141,0.478278818186467,0,0,0.211673582723883,0.649243880549111,0,0,0.313359791546046,0,0.169291777801603,0,0,0,0,0,0,0,0,0.556812347790485,0,0.270455678475983,0.33307196799782,1.4098700508785,3.92995134857262,0,0,0,0,59.4473766996848,71.2715233998333,76.790175524808,0,0,0.222617410045812,0,6.75601306009579,0.19924798825107,0.276283915531148,0,0.613612095012929,0,1.55519793830904,24.5340598632202,0.716084698702437,0.511572370226872,0.295930216910801,0,0,0,0.371072392647405,0,0,0.174919999992391,0,1.2517279311405,29.2391697836681,7.8007934983419,0,0.291604613383254,0,0,0.361789315876224,0,0,0,0.658156191461918,0.544692317594951,1.81250867562184,0.307801034015188,0,2.76676685265672,0.897576444097721,4.23724750495832,217.239789777437,50.1954811842205,3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| |||
|short_description=p3@ARHGDIB | |||
}} |
Latest revision as of 14:26, 17 September 2015
Short description: | p3@ARHGDIB |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_ARHGDIB_5end |
Coexpression cluster: | C50_chorionic_placenta_amniotic_migratory_smallcell_chronic_choriocarcinoma |
Association with transcript: | 0bp_to_ENST00000545895_5end |
EntrezGene: | ARHGDIB |
HGNC: | 679 |
UniProt: | F5H3P3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 5.16e-37 | 253 |
squamous epithelial cell | 8.89e-12 | 63 |
endo-epithelial cell | 7.70e-09 | 42 |
extraembryonic cell | 4.48e-08 | 19 |
epithelial cell of nephron | 4.56e-08 | 15 |
epithelial cell of alimentary canal | 7.05e-08 | 20 |
kidney tubule cell | 2.33e-07 | 10 |
nephron tubule epithelial cell | 2.33e-07 | 10 |
kidney cell | 8.53e-07 | 17 |
kidney epithelial cell | 8.53e-07 | 17 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 9.71e-15 | 14 |
membranous layer | 9.71e-15 | 14 |
chorion | 4.25e-11 | 7 |
larynx | 4.71e-09 | 9 |
primordium | 3.91e-08 | 160 |
nephron epithelium | 4.56e-08 | 15 |
renal tubule | 4.56e-08 | 15 |
nephron tubule | 4.56e-08 | 15 |
nephron | 4.56e-08 | 15 |
uriniferous tubule | 4.56e-08 | 15 |
nephrogenic mesenchyme | 4.56e-08 | 15 |
excretory tube | 2.17e-07 | 16 |
kidney epithelium | 2.17e-07 | 16 |
nephron tubule epithelium | 2.33e-07 | 10 |
extraembryonic structure | 5.65e-07 | 24 |
mucosa | 5.81e-07 | 20 |
placenta | 6.24e-07 | 4 |
allantois | 6.24e-07 | 4 |
somatic layer of lateral plate mesoderm | 9.60e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 5.15e-19 | 106 |
squamous cell carcinoma | 5.38e-16 | 14 |
cell type cancer | 1.82e-13 | 143 |
cancer | 5.26e-08 | 235 |
disease of cellular proliferation | 6.70e-08 | 239 |
adenocarcinoma | 1.96e-07 | 25 |