FFCP PHASE1:Hg19::chr12:46121375..46121393,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=400027 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC= | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=310bp_to_NR_028408_5end | |||
|cluster_id=chr12:46121375..46121393,- | |||
|description=CAGE_peak_3_at_LOC400027_5end | |||
|id=chr12:46121375..46121393,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:1240,5.65e-07,39 | |||
|ontology_enrichment_uberon=UBERON:0000073!1.82e-13!94;UBERON:0001016!1.82e-13!94;UBERON:0007023!1.98e-13!115;UBERON:0001017!3.11e-13!82;UBERON:0005743!2.65e-12!86;UBERON:0001049!6.98e-12!57;UBERON:0005068!6.98e-12!57;UBERON:0006241!6.98e-12!57;UBERON:0007135!6.98e-12!57;UBERON:0002346!1.25e-11!90;UBERON:0000955!4.68e-10!69;UBERON:0006238!4.68e-10!69;UBERON:0003075!5.41e-10!86;UBERON:0007284!5.41e-10!86;UBERON:0002616!1.42e-09!59;UBERON:0002780!9.47e-09!41;UBERON:0001890!9.47e-09!41;UBERON:0006240!9.47e-09!41;UBERON:0003080!1.03e-08!42;UBERON:0000924!4.58e-08!173;UBERON:0006601!4.58e-08!173;UBERON:0003056!1.04e-07!61;UBERON:0004121!6.04e-07!169;UBERON:0000153!8.04e-07!129;UBERON:0007811!8.04e-07!129 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.12e-14,89;UBERON:0001017,2.40e-13,81;UBERON:0007023,2.52e-13,114;UBERON:0002346,1.09e-12,86;UBERON:0001049,1.44e-12,56;UBERON:0005068,1.44e-12,56;UBERON:0006241,1.44e-12,56;UBERON:0007135,1.44e-12,56;UBERON:0000073,1.02e-11,53;UBERON:0002616,1.02e-11,53;UBERON:0003075,6.73e-11,82;UBERON:0007284,6.73e-11,82;UBERON:0011216,1.51e-10,223;UBERON:0000955,5.25e-10,68;UBERON:0006238,5.25e-10,68;UBERON:0002780,3.02e-09,41;UBERON:0001890,3.02e-09,41;UBERON:0003080,3.02e-09,41;UBERON:0006240,3.02e-09,41;UBERON:0010314,7.58e-09,132;UBERON:0004121,2.23e-08,171;UBERON:0000924,2.23e-08,171;UBERON:0006601,2.23e-08,171;UBERON:0003056,5.15e-08,61;UBERON:0010371,2.44e-07,104 | |||
|phase1_expression=0.54503513781167,0.642301571672949,0.140954404095971,0,0.446961094427288,0.872338524100369,0,1.26343974685366,1.04474251279935,1.72013755551056,1.39560233594486,0.436882744260345,0,1.48519623552056,1.65698687863958,0.672325146451775,0,0.730310090387373,0.487932798790507,1.23121058076788,2.04000691244253,0.626909442956176,2.86235987131057,1.77936752594749,1.38096903554283,3.66784347590166,2.29881650459848,2.12519109546934,5.90046415273356,2.68680578668049,2.63187409637329,2.75826367343678,1.204823675113,2.9580320813343,9.3735312702165,4.83375390457233,2.93600439334847,0,3.60980005446255,2.60413044859022,0.223915474239924,0.971680998056939,1.03030227053675,3.05336301437086,1.88937971844405,2.18325655069035,1.16214518452842,1.6446715520873,0.619412741790207,0.863077176966451,2.0492856522328,0.945928919554341,2.06847408441971,4.51839278508678,1.35426486594342,1.12945403725563,1.09162460023138,3.14612878223118,0.918251677112708,1.28371610830437,0.639337125799041,2.30895910130701,1.19678194572979,1.70489900213078,0.870627715885752,1.70215567407342,1.24564449799115,2.76373531782418,1.0429658368404,0.65156653411535,1.21079900526674,1.10483290796269,0.949387162322653,0.845021145247767,1.4882300997553,1.46761051855863,3.59451619668784,2.85336096398862,2.08943262706204,0.855038231223746,0.39783335439818,0.365328307529268,1.75996244461323,1.63841583378639,0.889509253863555,0.853460445133014,4.00395987036012,3.4485146397269,3.96626923670917,3.81621501814146,6.83055562931338,2.34894875748376,3.44045905312706,5.28685314316103,3.92355994087075,4.47752944117631,0.590129310341499,0.786021525498329,0.411202997999018,0.501559486172034,0.977766799900771,0,5.84480185223734,1.44833593950726,0.883817722424512,0.664601683750863,0.270803863765016,1.0247305578054,1.56071217071854,1.80881695064044,1.93445012450094,2.02862160014537,0.444859689486181,0.535081656179426,1.04535523804977,0.453237370790265,1.14966148080576,0.68725489096526,0.506039384039006,0.637130828648193,0,0.950452044448374,0.301150238155546,0.76791966692651,1.24930726552346,0.947109008176067,0.821127996921047,1.41124720257313,0.802320587350522,1.01377082717959,4.87613732627923,1.34140171940727,1.53435074212236,0.361439152384566,0.50133791063589,0.869079113764942,0.795285947051099,0.486634870302636,1.98523116044542,1.10864698731282,1.75669571386252,2.48860243445654,1.09288586487763,0.370784442784429,0.324547393654683,0.348259474598534,0.398873881556595,5.24679373471752,5.71994910780128,3.34311751196608,0.993812036833525,0,0.347140501607594,0,2.51699661725944,0.825354125820202,1.04497483268405,1.03366703667732,1.06729878806013,1.00416183829401,0.402829317109147,0,0.488124115096339,0,4.0507097394088,1.51809538082936,0.22452937262617,0.900891843866578,0,0.949265659568129,2.01521918323448,1.31780417436063,0,0.872188104285069,0,0.633152558322899,1.58891016975863,1.72101972449288,2.12801029319014,0,1.06748995729705,0.24666754841716,0.622422070799533,1.61652806483626,1.63461903113459,1.81628913173918,0.576175924479999,5.38939293217732,1.5608003841516,0.570471821544449,1.04614076386261,1.52664848236894,2.5899671098901,1.12360645361799,1.02077085627447,1.35117749042945,1.03325781175765,0,0.494533858557114,0,1.43723628363248,1.17835279767846,2.37725187756732,0.831192346452549,0.438977620880838,2.75839016219118,0.600952235626387,1.13432183160021,0.89694817844431,1.70845911054854,0.635795703478686,1.50045548042201,0.618315175430633,2.06112432036503,0.37223371266318,0.843881661206331,0.779496041289589,1.51460264546469,0.828449087780694,1.13152239773168,1.06502877754984,0.806016785821122,0.169560592310488,0.57978255948989,0.272746120590835,0.573609190778008,2.31750041646231,1.59035721985782,2.78865462886844,3.62813692553797,1.00928340350251,0.72995471815166,1.56449532329816,0.643240938192885,0,0.464367928031979,0.721879481669586,0.946454400318751,0.674338760312407,0.241011029883482,0.992645754591546,0.435758888184812,0.474541238222193,0.269662616320329,0.392442930250692,0,0,1.40241773803446,1.2347220339942,1.47008711385542,1.26755034821831,0,0,2.20731549707325,1.96781501668982,0.686271241194102,0.768251997860379,1.1240175325762,1.20634766893957,1.20364978706088,5.2129328849652,2.07986957055916,1.44331342025273,1.15930404975077,1.05667824812239,1.01056513432752,0,0.951270761172991,0.790204397959275,0.858486162094873,0.492434012174795,0,0.148631162288728,1.87467667973554,0.16798212819886,0.708875486211932,1.07470227243418,1.16253575405585,0.383382679165211,2.46331618947972,1.84901711427775,1.03664057770386,1.15295962733569,0.50496973370552,1.65094525159639,1.52795370223311,0,0,0.616964956219941,0.901029173531752,2.5724378936752,0.897048674762886,1.30788020649984,0.51336800074665,0.775630294546667,0,0.845302752556,1.06375246633948,3.12022310734098,1.28603687131071,0,1.3321108950805,1.14382394926518,1.08524321078289,0.823240336780769,0.325736184293735,0.710783897485092,1.58390374586686,0,0,0.199945982364114,4.86495122564762,0,0,0.718874566474748,0,0,1.15825045334063,1.02738161275192,0.358121926479791,2.91421374383171,0.394061520403854,1.72502059887614,0.898401253958239,2.03275699377971,3.90419561572865,8.50617694055465,3.68535783735567,4.46557126157214,2.24702107184155,2.99161459204025,0.828831026872071,1.2269149171914,3.50119364741774,2.44138521329762,1.03985430765404,0.535286966391485,0.473107245101804,1.40569697991256,0,0,2.0694614258501,0.664225598535437,0.553107505625109,1.30325421702124,2.34961388955289,2.40200396667599,1.24060815673732,2.5885704098234,2.13455115606889,0.606255142892519,0,0.30239029332968,0.248107807818777,0.153461973288062,0.561320188866147,0.512556597022804,1.02341449813341,0.321707842287215,0,1.07946785661859,0,0.657017248110473,0.519254429183621,1.16210378459959,2.41718899183244,1.20303882181971,1.47329582297434,1.60740227430449,1.0925470080403,1.04899531967539,0,0.847168708148562,1.56869953835371,1.46139224653261,1.68882606228601,0,1.36074964221213,0.647747748306418,0,1.35473218771926,2.00675909541941,0.254876273045038,0.831076008928724,1.11937377361089,1.75407901316748,2.61435451024901,0.769350375349168,0.656029291399411,0.325378394664303,1.44257416306811,1.37354197227515,1.98022799809411,0.574265537996172,0.650060246036521,0,1.83674364755032,0.924291702687866,0.921022048356777,0.964856007391714,0.537101224341368,0.580066775656914,1.44885266607372,1.86967274858148,1.32227932288782,0.768760269460425,2.16941611240793,2.2254711788221,1.39453664789186,2.83331112147576,2.7881490806424,1.54016790088044,0.532306030317022,0.869932992075073,0.37064843820784,1.00187420719394,1.116475108079,0.949138274156178,0.38126038784765,0.255897791311334,0.855877976067841,0.636406495851874,0.78494864019923,0.899362287916574,0.54907405947211,1.06031162111118,1.01091240786658,0,1.68503382495592,0.975267478179181,0.974853958525138,0,1.36499911407986,1.27264888758341,1.13008116620243,1.10273068709225,0,0,1.15755106853338,0,0.608731130888112,0.30982349809975,1.69017361519345,1.29070216983646,0.589494246078727,2.49669736036875,0.354761064070598,0.211107635297664,0.658589785919804,1.51789269506286,1.74967360122491,1.15466535270614,0.670302275535787,1.08890984861323,1.22386941009813,1.72202149068492,0,1.7737206141467,0.229723400206959,1.52234282769651,1.52927441428475,1.70894156152249,0.952927101831156,2.05681136543097,1.94541993357815,1.08006287447623,1.58625035258854,0.854592569019785,0,0.735120647943095,3.90186667764009,2.01976898167023,1.9919716137556,0.159426272728822,2.59453182862662,1.34053759092657,4.02179807175377,8.11554850686389,3.36956613736151,1.82587743226554,1.09675927041116,10.0253790836027,0.846458889008016,2.24823305145179,1.41259795033733,4.25846237690326,1.03051603426729,2.15068535015921,3.13146551049382,2.0021897005429,6.44780714826733,1.67043704337145,1.23087398947712,1.6227340708559,1.33228787199128,1.4098700508785,0.37428108081644,0.586032717087576,1.33496573924465,2.67464122265948,2.84136146806413,0,0.890894042497916,0,0.994147647766298,2.39138007897872,3.7844959707788,0.494411622680279,3.1668811219199,1.39473591775749,2.48655523978033,1.25966373927138,0.511343412510774,1.47701766553283,0.622079175323615,0.269605053441981,1.61119057208048,7.1620131831762,2.95930216910801,7.18449277040819,0,2.90799823828566,2.22643435588443,5.98841394003583,0.260427761085233,2.0990399999087,1.44999915086959,0.455173793141999,1.27126825146383,8.50995654364571,5.51589397186343,17.4962768029953,2.77799991893268,2.65722415744152,2.05013945663194,4.5774520895125,2.98564001814306,3.25102380848902,2.19385397153973,4.35753854075961,3.62501735124369,3.23191085715948,2.16489906109302,0.23056390438806,0.538545866458633,2.06430006651815,0.31900115973192,0.457987967009312,1.06606955203727,0,1.8837630767403,2.32696354660219,3.38393490925771,3.13700054908383,4.86682602229944,3.41556718903533,0.953619473882272,0.421996129056054,0.652931232636591,2.12029607150911,3.89499551535764,0.995261931078505,1.94606641907346,1.83309043480088,1.48260564340311,0.247127877893006,0.730953646538188,3.16785325009182,6.42062117839031,2.57690890297873,1.45963831372533,1.17398771359254,0.971121518136371,2.36750641709634,4.83962864194656,3.0607276163049,1.26373159256976,5.56196651833622,3.5253985075064,0.664653872707185,2.31694369112849,0.627865836814451,1.19472429772959,0.284609546029793,1.24807205711825,0.694238953340524,0.391969589657511,0.0870592065804026,2.62090002363045,1.37588825977293,1.45134496933628,1.75414361006845,0.985385484638511,1.93978032976839,0.264768380074501,7.23138370497704,1.23337732182076,1.58971689362392,1.45614830698521,1.17330829640882,1.52301758477914,1.92107695265417,0.39961921916426,1.72908500584927,1.37443915399099,6.34901492089269,1.4405479798815,1.24252535565433,0.235694034616795,0.951329442515298,0.941425616810999,1.52997326454483,1.44475294950759,4.80336230967832,4.10716136675979,0,0.429765441419957,1.8402114799552,2.23425921017803,2.7499250881402,0.717873024576814,1.19807400299395,3.86303443322914,0.89268582976749,4.03100834920358,0.360299883542404,1.16495949527454,1.02418136999391,0.906574442192831,0.674035438541849,4.4292366681637,2.28617996577618,0.795229689809303,3.13267834056624,1.60753148465019,2.20063098555574,2.07720169014593,0.899895566206002,1.5476039091159,1.39723980313457,0.670869375198532,1.57611414598396,2.98991152369489,1.6896053843105,3.5857467866569,1.34340638123612,2.1440859791201,1.98627591109629,1.27134268827375,3.25799761052228,0,1.30634944043764,3.59190574687462,5.41810636945637,1.02232813071253,0.79318464064088,0.58620893471233,1.32506888912221,3.10279095267721,2.90911723833918,1.19760786519031,1.40963004463334,2.45611048905698,3.14408610199332,1.24271716604159,0.992332043623902,1.38328142328561,0.974340787047167,0,0.544017803369474,1.2534494701135,0.612691153526923,0.655745261419609,1.88464915500281,0,2.07444650333337,1.752673029891,3.44045517414043,1.88579387612649,2.67014532647949,4.15045904808692,1.12482367165896,3.1846314683746,0.856396000634902,0.705797459094515,2.81000943484129,2.60857851499485,0.149254802886874,1.40227985908335,1.66441758450784,0,0.754703705257725,0.889811221596536,1.83072054717539,0.907385542579434,1.24349760466224,1.18284119991707,0.796483835818512,0.899606224327209,0.776314784381297,2.48823724704513,0.797525143673985,0,0.751288044986092,0.380805212168795,0,0.727394636810238,1.28892668450986,0.928067519756987,1.19428766609585,0.400027764663154,1.03018711554838,0.336749488765919,0,1.15571898244382,0.214441591374926,2.08795433572169,0.226705925512272,1.15761237161917,0.734210113519403,1.07453304648892,0.308801447160972,0.219284049578707,0.883445729729405,0.964570191354574,0.844712203265363,3.07489822305536,2.41801239211839,0.607719912354764,2.35039341457942,0.194860308839388,0.398594520940089,1.4720885483026,0.655219697692825,0.491545817507439,1.05656061679314,0.19998739585493,1.49368421571797,3.2720846135555,0,1.47284760201473,1.81843360035278,0,3.83683113910955,5.71471500402414,1.88719130227076,5.02364335683264,4.75251083871271,11.2664707653892,6.44465974146811,1.67593475391973,0.318004350653419,3.07560805504888,7.20513673456923,1.41070377476274,1.2249819094128,1.86264752779733,0,2.87340946302872,2.66651273512982,4.03314713954749,1.9364030689981,2.09918339321406,1.42769420259154,2.15924980702256,0.589848616738702,0.733714394086716,1.73288499225507,0.381382095467167,0.690359926060101,1.39241355481392,2.632361492224,0.40341013740704,0.781514011233092,0.261906694481422,1.47394725759087,1.33070477595341,2.22874029240702,1.56215619722769,2.48024155801421,1.52197944465376,3.28184885410932,0,0.496211178389294,3.51742488719241,1.27762427639595,10.1783348816874,9.41594422212707,3.64179362541979,3.64259506162076,0.354809480650555,3.68748760178494,1.02892805662451,2.65081958609644,2.10472875401117,0.709163045303809,0.778619813244484,2.98273752831953,1.72827148907602,0.560544326627578,2.73947616152849,1.29556554731173,2.8665101273223,4.14563956224607,2.68623139945635,1.62737995515375,0.521574816907738,1.60342272946051,0.828864656652147,1.0243108625637,1.38251932362818,2.15113679410139,1.77498001095848,1.78948149994231,3.38709640152743,3.2074961596167,1.24082554265728,0.955538938977433,0.671132590786754,4.22046004545545,0.609589624911347,3.88457302312737,5.2358031496686,3.4794432940146,2.4285549652957,5.84848658655264,4.97376937903421,2.49732190632894,36.2556923345062,19.2395904304501,3.17021971490014,1.46630900405095,1.31135736302374,6.1141248526998,2.69663153929296,3.77082475362602,3.14093547383912,1.48523200163543,4.226557275834,0.509781344063451,1.12780701575824,1.28915775947154,0.999411559249289,0.357107877211315,3.52894871715692,2.24675826729671,3.65168194123259,1.37618785021362,3.58348957878628,0.631086248772738,1.97175321553653,3.05445483238264,2.1161073620616,0,0,0,1.26166424835079,1.20192129160065,1.52038201213724,0.815910637935854,0,1.19463369395298,1.25353769646188,1.97024615367422,2.94760543171796,6.63335551567024,4.55105181792339,2.55880778281177,5.71354635512977,1.16260037704811,2.42091385753846,0.672791175483681,2.5458863311266,3.03175783437329,2.17716747896961,6.16019941953506,1.21233695426258,1.5061663132462,2.32862249582209,0.488419611665847,2.02781957167659,0,0.988077223172456,0,2.5670703278402,3.66206560484165,0.665756774185513,1.81146414231924,1.28227396921293 | |||
|short_description=p3@LOC400027 | |||
}} |
Latest revision as of 10:03, 18 September 2015
Short description: | p3@LOC400027 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_LOC400027_5end |
Coexpression cluster: | NA |
Association with transcript: | 310bp_to_NR_028408_5end |
EntrezGene: | LOC400027 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
nervous system | 1.12e-14 | 89 |
central nervous system | 2.40e-13 | 81 |
adult organism | 2.52e-13 | 114 |
neurectoderm | 1.09e-12 | 86 |
neural tube | 1.44e-12 | 56 |
neural rod | 1.44e-12 | 56 |
future spinal cord | 1.44e-12 | 56 |
neural keel | 1.44e-12 | 56 |
regional part of nervous system | 1.02e-11 | 53 |
regional part of brain | 1.02e-11 | 53 |
neural plate | 6.73e-11 | 82 |
presumptive neural plate | 6.73e-11 | 82 |
organ system subdivision | 1.51e-10 | 223 |
brain | 5.25e-10 | 68 |
future brain | 5.25e-10 | 68 |
regional part of forebrain | 3.02e-09 | 41 |
forebrain | 3.02e-09 | 41 |
anterior neural tube | 3.02e-09 | 41 |
future forebrain | 3.02e-09 | 41 |
structure with developmental contribution from neural crest | 7.58e-09 | 132 |
ectoderm-derived structure | 2.23e-08 | 171 |
ectoderm | 2.23e-08 | 171 |
presumptive ectoderm | 2.23e-08 | 171 |
pre-chordal neural plate | 5.15e-08 | 61 |
ecto-epithelium | 2.44e-07 | 104 |
Ontology term | p-value | n |
---|---|---|
leukemia | 5.65e-07 | 39 |